Same species lift over construction: Difference between revisions
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=Step 1 - blat= | =Step 1 - blat= | ||
Decide on a workDirectory where all this is to be performed. Note the script: [[File:sameSpeciesBlatSetup.sh.txt]] | Decide on a workDirectory where all this is to be performed. Note the script: [[File:sameSpeciesBlatSetup.sh.txt]] | ||
and the comments in it to setup the workDirectory and your two genome sequences. | and the comments in it to setup the workDirectory and your two genome sequences. That script also | ||
uses [[File:BlatJob.csh.txt]] | |||
Revision as of 05:05, 13 March 2013
Same Species Lift Over
Same species lift over procedure. There is a different procedure for different species lift over construction: Minimal_Steps_For_LiftOver
Step 1 - blat
Decide on a workDirectory where all this is to be performed. Note the script: File:SameSpeciesBlatSetup.sh.txt and the comments in it to setup the workDirectory and your two genome sequences. That script also uses File:BlatJob.csh.txt
