|
|
| (19 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| == Release ==
| | This page is no longer maintained. |
|
| |
|
| The Gbib is a Ubuntu 13 VirtualBox VM with apache, mysql and the genome browser (see [[Preparing_VirtualBox_images]]).
| | Moved to [http://genomewiki.ucsc.edu/genecats/index.php/Genome_Browser_in_a_Box_config] |
| It has a special hg.conf, uses the tableList tables in all organism DBs and loads most files from hgdownload on the fly.
| |
| | |
| For QA release instructions, see [[Gbib release]]
| |
| | |
| Development for the Gbib is a different business and described in [[Gbib development]].
| |
| | |
| == Protected tracks ==
| |
| | |
| protected tracks are tracks that are not on hgdownload but are available from the box. Currently these are OMIM and hgmd, but will hopefully include LOVD and decipher one day.
| |
| | |
| These tracks are missing from the tableList table in hg19, so their tableList info is in /root/tableListAdd.hg19.tab and is added to tableList after each rsync. This is done by hgMirror, (is called from updateBrowser.sh), because hgMirror includes all post-rsync code now.
| |
| | |
| The track tables are added manually to the box once and are not updated with normal auto updates.
| |
| | |
| OMIM are just the normal tables, in a copy form hgwbeta from Apr 2014.
| |
| | |
| The HGMD table is just a pointer to a bigbed file on hgdownload. Our binaries include code to add a password when this file is loaded via https.
| |
Latest revision as of 09:34, 20 October 2014
This page is no longer maintained.
Moved to [1]
