Hg38 20-way conservation alignment: Difference between revisions

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(initial contents)
 
(updated with new canFam3 rheMac3 and mm10 alignments)
 
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==see also==
===see also==


<UL>
<UL>
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   <TD ALIGN=RIGHT>2011-12-30</TD>
   <TD ALIGN=RIGHT>2011-12-30</TD>
   <TD ALIGN=RIGHT>2012-01-03</TD>
   <TD ALIGN=RIGHT>2012-01-03</TD>
   <TD>2014-01-28</TD><TD ALIGN=RIGHT>79.729%</TD>
   <TD>2015-04-09</TD><TD ALIGN=RIGHT>80.828%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD>
   <TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD>
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   <TD ALIGN=RIGHT>2012-01-05</TD>
   <TD ALIGN=RIGHT>2012-01-05</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD ALIGN=RIGHT>2012-01-06</TD>
   <TD>2014-01-27</TD><TD ALIGN=RIGHT>49.978%</TD>
   <TD>2015-04-10</TD><TD ALIGN=RIGHT>50.395%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree&nbsp;shrew</TD>
   <TH>[http://www.broadinstitute.org/ftp/pub/assemblies/mammals/treeShrew/tupBel1/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPY00 Tupaia<BR>belangeri]</TD><TD>Tree&nbsp;shrew</TD>
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   <TD ALIGN=RIGHT>2012-02-06</TD>
   <TD ALIGN=RIGHT>2012-02-06</TD>
   <TD ALIGN=RIGHT>2012-02-07</TD>
   <TD ALIGN=RIGHT>2012-02-07</TD>
   <TD>2014-01-25</TD><TD ALIGN=RIGHT>31.629%</TD>
   <TD>2015-04-09</TD><TD ALIGN=RIGHT>31.653%</TD>
</TR>
</TR>
</TABLE>
</TABLE>

Latest revision as of 04:41, 16 April 2015

=see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence		 UCSC db name/
genome-preview
browser		 Scientific name/
assembly information		 Common
name		 assembly date (version) source
version		 Repeat
Masker		 Window
Masker		 chain
on hg38		 % of hg38
matched
(chainLink table)
01hg38Homo
sapiens		Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2015-01-14N/A
02panTro4Pan
troglodytes		Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2014-05-2793.112%
03panPan1Pan
paniscus		Bonobo May. 2012 (Max-Planck/panPan1) Max-Planck Institute panpan1 (GCA_000258665.1) 2013-03-05 2013-03-07 2014-12-1192.929%
04gorGor3Gorilla
gorilla
gorilla		Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2014-12-1588.005%
05ponAbe2Pongo
pygmaeus
abelii		Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2014-09-0289.187%
06nomLeu3Nomascus
leucogenys		Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2014-12-1286.379%
07nasLar1Nasalis
larvatus		Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) Proboscis Monkey Functional Genome Consortium 2014-12-12 2014-12-12 2014-12-1574.541%
08rhiRox1Rhinopithecus
roxellana		Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) Novogene 2015-02-20 2015-02-18 2015-02-2385.109%
09macFas5Macaca
fascicularis		Crab-eating macaque Jun 2013 (Macaca_fascicularis_5.0/macFas5) Washington University (WashU) GCA_000364345.1 2013-06-30 2013-06-30 2014-12-1485.675%
10rheMac3Macaca
mulatta		Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2015-04-0980.828%
11papAnu2Papio
anubis		Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) Baylor College of Medicine 2012-07-22 2012-08-07 2014-12-1384.179%
12saiBol1Saimiri
boliviensis		Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2014-12-1370.565%
13chlSab2Chlorocebus
sabaeus		Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) Vervet Genomics Consortium GCA_000409795.2 2014-04-10 2014-04-10 2014-07-1184.393%
14calJac3Callithrix
jacchus		Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2014-12-1371.709%
15tarSyr2Tarsius
syrichta		Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Washington University 2014-11-21 2014-11-22 2014-12-1256.022%
16micMur1Microcebus
murinus		Mouse lemur Jul. 2007 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 2012-05-04 2015-03-2242.653%
17otoGar3Otolemur
garnettii		Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2015-02-2353.196%
18canFam3Canis
lupus
familiaris		Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2015-04-1050.395%
19tupBel1Tupaia
belangeri		Tree shrew Dec. 2006 (Broad/tupBel1) Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2009-09-02 2012-05-03 2015-03-2735.019%
20mm10Mus
musculus		Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2015-04-0931.653%
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