Ce11 26-way conservation alignment: Difference between revisions
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<LI>C. elegans 26-way [[Ce11 26-way conservation lastz parameters]]</LI> | <LI>C. elegans 26-way [[Ce11 26-way conservation lastz parameters]]</LI> | ||
<LI>all other [[UCSC Multiple Alignments]]</LI> | <LI>all other [[UCSC Multiple Alignments]]</LI> | ||
<LI>see also: [[Ws245ChainNet|matrix]] of all pair-wise alignments | |||
</UL> | </UL> | ||
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<TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA194557/ 02]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51 caeSp51]</TH><TD>[http://www.wormbase.org/species/c_sp5 Caenorhabditis<BR>sp5<BR>ju800]</TD><TD>C. sp. 5 ju800</TD> | ||
<TD>Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51)</TD> | <TD>Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51)</TD> | ||
<TD>University of Edinburgh Caenorhabditis sp. 5 genome project</TD> | <TD>University of Edinburgh Caenorhabditis sp. 5 genome project</TD> | ||
| Line 53: | Line 54: | ||
<TD>2015-07-02</TD><TD ALIGN=RIGHT>41.715%</TD> | <TD>2015-07-02</TD><TD ALIGN=RIGHT>41.715%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS225/genomes/c_briggsae/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4]</TH><TD>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS225/genomes/c_briggsae/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4]</TH><TD>[http://www.wormbase.org/species/c_briggsae Caenorhabditis<BR>briggsae]</TD><TD>C. briggsae</TD> | ||
<TD>Apr. 2011 (WS225/cb4)</TD> | <TD>Apr. 2011 (WS225/cb4)</TD> | ||
<TD>Washington University School of Medicine GSC and Sanger Institute cb4 </TD> | <TD>Washington University School of Medicine GSC and Sanger Institute cb4 </TD> | ||
| Line 60: | Line 61: | ||
<TD>2015-07-01</TD><TD ALIGN=RIGHT>39.384%</TD> | <TD>2015-07-01</TD><TD ALIGN=RIGHT>39.384%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_sp._11_KK-2011/all_assembly_versions/GCA_000186765.1_Caenorhabditis_sp11_JU1373-3.0.1/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111 caeSp111]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000186765.1 Caenorhabditis<BR>tropicalis]</TD><TD>C. tropicalis</TD> | ||
<TD>Nov. 2010 (WUSTL 3.0.1/caeSp111)</TD> | <TD>Nov. 2010 (WUSTL 3.0.1/caeSp111)</TD> | ||
<TD>Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1)</TD> | <TD>Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1)</TD> | ||
| Line 67: | Line 68: | ||
<TD>2015-07-07</TD><TD ALIGN=RIGHT>37.870%</TD> | <TD>2015-07-07</TD><TD ALIGN=RIGHT>37.870%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_japonica/all_assembly_versions/GCA_000147155.1_C_japonica-7.0.1/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4 caeJap4]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000147155.1/ Caenorhabditis<BR>japonica]</TD><TD>C. japonica</TD> | ||
<TD>Aug. 2010 (WUSTL 7.0.1/caeJap4)</TD> | <TD>Aug. 2010 (WUSTL 7.0.1/caeJap4)</TD> | ||
<TD>Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1)</TD> | <TD>Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1)</TD> | ||
| Line 74: | Line 75: | ||
<TD>2015-06-25</TD><TD ALIGN=RIGHT>27.709%</TD> | <TD>2015-06-25</TD><TD ALIGN=RIGHT>27.709%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA51225/ 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2 caeAng2]</TH><TD>[http://www.wormbase.org/species/c_angaria Caenorhabditis<BR>angaria]</TD><TD>C. angaria</TD> | ||
<TD>Mar. 2012 (WS245/caeAng2)</TD> | <TD>Mar. 2012 (WS245/caeAng2)</TD> | ||
<TD>Division of Biology, California Institute of Technology</TD> | <TD>Division of Biology, California Institute of Technology</TD> | ||
| Line 81: | Line 82: | ||
<TD>2015-06-30</TD><TD ALIGN=RIGHT>17.682%</TD> | <TD>2015-06-30</TD><TD ALIGN=RIGHT>17.682%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA12644/ 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3]</TH><TD>[http://www.wormbase.org/species/p_pacificus Pristionchus<BR>pacificus]</TD><TD>P. pacificus</TD> | ||
<TD>Aug. 2014 (P_pacificus-v2/priPac3)</TD> | <TD>Aug. 2014 (P_pacificus-v2/priPac3)</TD> | ||
<TD>Max Planck Institute for Developmental Biology P. pacificus genome project</TD> | <TD>Max Planck Institute for Developmental Biology P. pacificus genome project</TD> | ||
| Line 88: | Line 89: | ||
<TD>2015-07-01</TD><TD ALIGN=RIGHT>6.308%</TD> | <TD>2015-07-01</TD><TD ALIGN=RIGHT>6.308%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB6009/ 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1]</TH><TD>[http://www.wormbase.org/species/p_exspectatus Pristionchus<BR>exspectatus]</TD><TD>P. exspectatus</TD> | ||
<TD>Mar. 2014 (WS243/P_exspectatus_v1/priExs1)</TD> | <TD>Mar. 2014 (WS243/P_exspectatus_v1/priExs1)</TD> | ||
<TD>Max Planck Institite for Developmental Genetics</TD> | <TD>Max Planck Institite for Developmental Genetics</TD> | ||
| Line 95: | Line 96: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>6.222%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>6.222%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEA64437/ 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1 burXyl1]</TH><TD>[http://www.wormbase.org/species/b_xylophilus Bursaphelenchus<BR>xylophilus]</TD><TD>Pine wood nematode</TD> | ||
<TD>Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1)</TD> | <TD>Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1)</TD> | ||
<TD>Wellcome Trust Sanger Institute B. xylophilus genome project</TD> | <TD>Wellcome Trust Sanger Institute B. xylophilus genome project</TD> | ||
| Line 102: | Line 103: | ||
<TD>2015-07-09</TD><TD ALIGN=RIGHT>6.291%</TD> | <TD>2015-07-09</TD><TD ALIGN=RIGHT>6.291%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Ancylostoma_ceylanicum/all_assembly_versions/GCA_000688135.1_Acey_2013.11.30.genDNA/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ancCey1 ancCey1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000688135.1 Ancylostoma<BR>ceylanicum]</TD><TD>A. ceylanicum</TD> | ||
<TD>Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1)</TD> | <TD>Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1)</TD> | ||
<TD>Cornell University Ancylostoma ceylanicum genome project</TD> | <TD>Cornell University Ancylostoma ceylanicum genome project</TD> | ||
| Line 109: | Line 110: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>9.736%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>9.736%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB506/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]</TH><TD>[http://www.wormbase.org/species/h_contortus Haemonchus<BR>contortus]</TD><TD>Barber pole worm</TD> | ||
<TD>Jul. 2013 (WormBase WS239/haeCon2)</TD> | <TD>Jul. 2013 (WormBase WS239/haeCon2)</TD> | ||
<TD>Sanger Institute</TD> | <TD>Sanger Institute</TD> | ||
| Line 116: | Line 117: | ||
<TD>2015-07-07</TD><TD ALIGN=RIGHT>8.936%</TD> | <TD>2015-07-07</TD><TD ALIGN=RIGHT>8.936%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Necator_americanus/all_assembly_versions/GCA_000507365.1_N_americanus_v1/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000507365.1 Necator<BR>americanus]</TD><TD>N. americanus</TD> | ||
<TD>Dec. 2013 (WS242/N_americanus_v1/necAme1)</TD> | <TD>Dec. 2013 (WS242/N_americanus_v1/necAme1)</TD> | ||
<TD>The Genome Institute at Washington University</TD> | <TD>The Genome Institute at Washington University</TD> | ||
| Line 123: | Line 124: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>8.902%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>8.902%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA186477/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1]</TH><TD>[http://www.wormbase.org/species/p_redivivus Panagrellus<BR>redivivus]</TD><TD>Microworm</TD> | ||
<TD>Feb. 2013 (Pred3/panRed1)</TD> | <TD>Feb. 2013 (Pred3/panRed1)</TD> | ||
<TD>California Institute of Technology P. redivivus genome project</TD> | <TD>California Institute of Technology P. redivivus genome project</TD> | ||
| Line 130: | Line 131: | ||
<TD>2015-07-01</TD><TD ALIGN=RIGHT>6.585%</TD> | <TD>2015-07-01</TD><TD ALIGN=RIGHT>6.585%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Heterorhabditis_bacteriophora/all_assembly_versions/GCA_000223415.1_Heterorhabditis_bacteriophora-7.0/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000223415.1/ Heterorhabditis<BR>bacteriophora]</TD><TD>H. bacteriophora/m31e</TD> | ||
<TD>Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1)</TD> | <TD>Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1)</TD> | ||
<TD>Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0</TD> | <TD>Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0</TD> | ||
| Line 137: | Line 138: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>10.486%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>10.486%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Ascaris_suum/all_assembly_versions/GCA_000298755.1_AscSuum_1.0/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1 ascSuu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298755.1 Ascaris<BR>suum]</TD><TD>Pig roundworm</TD> | ||
<TD>Sep. 2012 (WS229/AscSuum_1.0/ascSuu1)</TD> | <TD>Sep. 2012 (WS229/AscSuum_1.0/ascSuu1)</TD> | ||
<TD>Beijing Genomics Institute</TD> | <TD>Beijing Genomics Institute</TD> | ||
| Line 144: | Line 145: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>5.722%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>5.722%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Strongyloides_ratti/all_assembly_versions/GCA_001040885.1_S_ratti_ED321/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_001040885.1/ Strongyloides<BR>ratti]</TD><TD>Threadworm</TD> | ||
<TD>Sep. 2014 (S. ratti ED321/strRat2)</TD> | <TD>Sep. 2014 (S. ratti ED321/strRat2)</TD> | ||
<TD>Wellcome Trust Sanger Institute S. ratti genome project</TD> | <TD>Wellcome Trust Sanger Institute S. ratti genome project</TD> | ||
| Line 151: | Line 152: | ||
<TD>2015-07-09</TD><TD ALIGN=RIGHT>5.669%</TD> | <TD>2015-07-09</TD><TD ALIGN=RIGHT>5.669%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Trichinella_spiralis/all_assembly_versions/GCA_000181795.2_Trichinella_spiralis-3.7.1/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000181795.1 Trichinella<BR>spiralis]</TD><TD>Trichinella</TD> | ||
<TD>Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1)</TD> | <TD>Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1)</TD> | ||
<TD>WashU School of Medicine T. spiralis genome project</TD> | <TD>WashU School of Medicine T. spiralis genome project</TD> | ||
| Line 158: | Line 159: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>2.848%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>2.848%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Trichuris_suis/all_assembly_versions/GCA_000701005.1_Tsuis_adult_male_v1.0/ 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000701005.1 Trichuris<BR>suis]</TD><TD>Whipworm</TD> | ||
<TD>Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1)</TD> | <TD>Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1)</TD> | ||
<TD>University of Melboure T. suis (male) genome project</TD> | <TD>University of Melboure T. suis (male) genome project</TD> | ||
| Line 165: | Line 166: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>2.917%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>2.917%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEA28837/ 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]</TH><TD>[http://www.wormbase.org/species/m_incognita Meloidogyne<BR>incognita]</TD><TD>M. incognita</TD> | ||
<TD>Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2)</TD> | <TD>Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2)</TD> | ||
<TD>Sanger and Genoscope</TD> | <TD>Sanger and Genoscope</TD> | ||
| Line 172: | Line 173: | ||
<TD>2015-06-30</TD><TD ALIGN=RIGHT>3.516%</TD> | <TD>2015-06-30</TD><TD ALIGN=RIGHT>3.516%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS210/genomes/m_hapla/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1]</TH><TD>[http://www.wormbase.org/species/m_hapla Meloidogyne<BR>hapla]</TD><TD>M. hapla</TD> | ||
<TD>Sep. 2008 (M. hapla VW9 WS210/melHap1)</TD> | <TD>Sep. 2008 (M. hapla VW9 WS210/melHap1)</TD> | ||
<TD>The Center for the Biology of Nematode Parasitism, N.C. State</TD> | <TD>The Center for the Biology of Nematode Parasitism, N.C. State</TD> | ||
| Line 179: | Line 180: | ||
<TD>2015-06-26</TD><TD ALIGN=RIGHT>3.916%</TD> | <TD>2015-06-26</TD><TD ALIGN=RIGHT>3.916%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJNA10729/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2 bruMal2]</TH><TD>[http://www.wormbase.org/species/b_malayi Brugia<BR>malayi]</TD><TD>Filarial worm</TD> | ||
<TD>May. 2014 (WS244/B_malayi-3.1/bruMal2)</TD> | <TD>May. 2014 (WS244/B_malayi-3.1/bruMal2)</TD> | ||
<TD>University of Pittsburgh B. malayi genome project</TD> | <TD>University of Pittsburgh B. malayi genome project</TD> | ||
| Line 186: | Line 187: | ||
<TD>2015-08-11</TD><TD ALIGN=RIGHT>5.065%</TD> | <TD>2015-08-11</TD><TD ALIGN=RIGHT>5.065%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Onchocerca_volvulus/all_assembly_versions/GCA_000499405.1_OVOC001/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000499405.1 Onchocerca<BR>volvulus]</TD><TD>O. volvulus</TD> | ||
<TD>Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1)</TD> | <TD>Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1)</TD> | ||
<TD>Wellcome Trust Sanger Institute O. volvulus genome project</TD> | <TD>Wellcome Trust Sanger Institute O. volvulus genome project</TD> | ||
| Line 193: | Line 194: | ||
<TD>2015-08-10</TD><TD ALIGN=RIGHT>5.193%</TD> | <TD>2015-08-10</TD><TD ALIGN=RIGHT>5.193%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Loa_loa/all_assembly_versions/GCA_000183805.3_Loa_loa_V3.1/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000183805.3 Loa<BR>loa]</TD><TD>Eye worm</TD> | ||
<TD>Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1)</TD> | <TD>Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1)</TD> | ||
<TD>Broad Institute L. loa genome project</TD> | <TD>Broad Institute L. loa genome project</TD> | ||
| Line 200: | Line 201: | ||
<TD>2015-07-23</TD><TD ALIGN=RIGHT>5.056%</TD> | <TD>2015-07-23</TD><TD ALIGN=RIGHT>5.056%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/species/PRJEB1797/ 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]</TH><TD>[http://www.wormbase.org/species/d_immitis Dirofilaria<BR>immitis]</TD><TD>Dog heartworm</TD> | ||
<TD>Sep. 2013 (WS240/D. immitis v2.2/dirImm1)</TD> | <TD>Sep. 2013 (WS240/D. immitis v2.2/dirImm1)</TD> | ||
<TD>Edinburgh University D. immitis genome project</TD> | <TD>Edinburgh University D. immitis genome project</TD> | ||
Latest revision as of 18:11, 3 September 2015
see also
- C. elegans 26-way Ce11 26-way Genome size statistics
- C. elegans 26-way Ce11 26-way conservation lastz parameters
- all other UCSC Multiple Alignments
- see also: matrix of all pair-wise alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on ce11 |
% of ce11 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | ce11 | Caenorhabditis elegans | C. elegans | Aug. 2014 (WBcel245/ce11) | Washington University School of Medicine GSC and Sanger Institute WBcel245 | 2015-06-10 | 2015-06-10 | N/A | N/A |
| 02 | caeSp51 | Caenorhabditis sp5 ju800 | C. sp. 5 ju800 | Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51) | University of Edinburgh Caenorhabditis sp. 5 genome project | 2015-07-08 | 2015-07-08 | 2015-07-09 | 40.332% |
| 03 | caePb3 | Caenorhabditis brenneri | C. brenneri | Nov. 2010 (C. brenneri 6.0.1b/caePb3) | The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2) | 2011-06-08 | 2011-06-08 | 2015-07-01 | 40.638% |
| 04 | caeRem4 | Caenorhabditis remanei | C. remanei | Jul. 2007 (WS220/caeRem4) | Washington University School of Medicine GSC C. remanei 15.0.1 | 2011-05-25 | 2011-05-25 | 2015-07-02 | 41.715% |
| 05 | cb4 | Caenorhabditis briggsae | C. briggsae | Apr. 2011 (WS225/cb4) | Washington University School of Medicine GSC and Sanger Institute cb4 | 2011-05-24 | 2011-05-24 | 2015-07-01 | 39.384% |
| 06 | caeSp111 | Caenorhabditis tropicalis | C. tropicalis | Nov. 2010 (WUSTL 3.0.1/caeSp111) | Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1) | 2011-05-31 | 2011-05-31 | 2015-07-07 | 37.870% |
| 07 | caeJap4 | Caenorhabditis japonica | C. japonica | Aug. 2010 (WUSTL 7.0.1/caeJap4) | Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1) | 2011-06-03 | 2011-06-03 | 2015-06-25 | 27.709% |
| 08 | caeAng2 | Caenorhabditis angaria | C. angaria | Mar. 2012 (WS245/caeAng2) | Division of Biology, California Institute of Technology | 2015-06-30 | 2015-06-30 | 2015-06-30 | 17.682% |
| 09 | priPac3 | Pristionchus pacificus | P. pacificus | Aug. 2014 (P_pacificus-v2/priPac3) | Max Planck Institute for Developmental Biology P. pacificus genome project | 2015-07-01 | 2015-07-01 | 2015-07-01 | 6.308% |
| 10 | priExs1 | Pristionchus exspectatus | P. exspectatus | Mar. 2014 (WS243/P_exspectatus_v1/priExs1) | Max Planck Institite for Developmental Genetics | 2015-07-14 | 2015-07-15 | 2015-07-23 | 6.222% |
| 11 | burXyl1 | Bursaphelenchus xylophilus | Pine wood nematode | Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1) | Wellcome Trust Sanger Institute B. xylophilus genome project | 2015-07-09 | 2015-07-09 | 2015-07-09 | 6.291% |
| 12 | ancCey1 | Ancylostoma ceylanicum | A. ceylanicum | Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1) | Cornell University Ancylostoma ceylanicum genome project | 2015-07-15 | 2015-07-15 | 2015-07-23 | 9.736% |
| 13 | haeCon2 | Haemonchus contortus | Barber pole worm | Jul. 2013 (WormBase WS239/haeCon2) | Sanger Institute | 2015-07-02 | 2015-07-06 | 2015-07-07 | 8.936% |
| 14 | necAme1 | Necator americanus | N. americanus | Dec. 2013 (WS242/N_americanus_v1/necAme1) | The Genome Institute at Washington University | 2015-07-15 | 2015-07-15 | 2015-07-23 | 8.902% |
| 15 | panRed1 | Panagrellus redivivus | Microworm | Feb. 2013 (Pred3/panRed1) | California Institute of Technology P. redivivus genome project | 2015-07-01 | 2015-07-01 | 2015-07-01 | 6.585% |
| 16 | hetBac1 | Heterorhabditis bacteriophora | H. bacteriophora/m31e | Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1) | Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0 | 2015-07-14 | 2015-07-15 | 2015-07-23 | 10.486% |
| 17 | ascSuu1 | Ascaris suum | Pig roundworm | Sep. 2012 (WS229/AscSuum_1.0/ascSuu1) | Beijing Genomics Institute | 2015-07-13 | 2015-07-14 | 2015-07-23 | 5.722% |
| 18 | strRat2 | Strongyloides ratti | Threadworm | Sep. 2014 (S. ratti ED321/strRat2) | Wellcome Trust Sanger Institute S. ratti genome project | 2015-07-08 | 2015-07-08 | 2015-07-09 | 5.669% |
| 19 | triSpi1 | Trichinella spiralis | Trichinella | Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1) | WashU School of Medicine T. spiralis genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 2.848% |
| 20 | triSui1 | Trichuris suis | Whipworm | Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1) | University of Melboure T. suis (male) genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 2.917% |
| 21 | melInc2 | Meloidogyne incognita | M. incognita | Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2) | Sanger and Genoscope | 2015-06-30 | 2015-06-30 | 2015-06-30 | 3.516% |
| 22 | melHap1 | Meloidogyne hapla | M. hapla | Sep. 2008 (M. hapla VW9 WS210/melHap1) | The Center for the Biology of Nematode Parasitism, N.C. State | 2010-09-21 | 2010-09-21 | 2015-06-26 | 3.916% |
| 23 | bruMal2 | Brugia malayi | Filarial worm | May. 2014 (WS244/B_malayi-3.1/bruMal2) | University of Pittsburgh B. malayi genome project | 2015-08-11 | 2015-08-11 | 2015-08-11 | 5.065% |
| 24 | oncVol1 | Onchocerca volvulus | O. volvulus | Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1) | Wellcome Trust Sanger Institute O. volvulus genome project | 2015-08-10 | 2015-08-10 | 2015-08-10 | 5.193% |
| 25 | loaLoa1 | Loa loa | Eye worm | Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1) | Broad Institute L. loa genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 5.056% |
| 26 | dirImm1 | Dirofilaria immitis | Dog heartworm | Sep. 2013 (WS240/D. immitis v2.2/dirImm1) | Edinburgh University D. immitis genome project | 2015-07-09 | 2015-07-09 | 2015-07-23 | 5.005% |
