TandemDups: Difference between revisions

Revision as of 01:27, 21 May 2017

methods

These are measurements of identical paired sequences with a separation between the pairs of at least one nucleotide. The smallest size sequence in this survey is 30 bases, the largest separation considered was 20,000 bases.

The procedure to find these sequences is as follows:

generate 29 base kmers for the entire genome, allow only kmers with bases: A C T G, no N's allowed.
pair up identical kmers with at least one base separation and up to 20,000 bases separation. This separation sequence is referred to here as the gap in this document.
collapse overlapping kmer pairs when they are the same size of sequence and the same spacing between the pairs. This procedure preserves the definition of duplicated identical pairs.
the resulting pairs can now be longer sequences with smaller separation then the constituent pairs
final result selects sizes of 30 bases or more for the size of the paired sequence, and at least one base remaining as a separation gap.
collapsed pairs that close the gap are discarded. They appear to indicate simple repeat sequences when this happens. It would be interesting to have this result available, but that is not available at this time.

The reason for starting with 29 base sized pairs and then selecting results of at least 30 base sized pairs results in a reasonable number of 30 base pairs. If the procedure starts with 30 base sized pairs, it produces way too many 30 base kmer pairs for a reasonable count.

The measurements are taken from the resulting db.tandemDups.bed[.gz] file in /hive/data/genomes/<db>/bed/tandemDups/db.tandemDups.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is thus calculated from: end - start + 2 * score

This data is also available in the tandemDups table for sequences with genome browser databases. Not all sequences measured here have genome browser databases.

The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated. Multiply this by 2 to see total amount of sequence involved in these repeats for both sides.

The gap total is the sum of the sizes of all the separation gaps between the paired sequences.

table features

The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers The example item is a worst case example, where the ratio of dup sequence size to gap size is the highest, i.e. smallest gap with largest dup size

tandemDups table statistics

count	year	dbName	ncbiAsmId	assembly method	item count	item median	item total	gap median	gap total	example item dup size, gap size, link	scatter plot dup size vs. gap size
019	2014	acaChl1	GCF_000695815.1	SOAPdenovo v. 1.6	69222	38	3687159	479	270396956	448, 1, KK830956:17007-17903	plot acaChl1
020	2012	aciBauTYTH_1	GCF_000302575.1	tbd	175	43	11650	1165	777735	35, 1, chr_CP003856:2714351-2714421	plot aciBauTYTH_1
021	2006	afrOth13	tbd	tbd	63170	39	3109998	1833	319093167	126, 1, 3-3:1498405-1498657	plot afrOth13
022	2013	amaVit1	GCA_000332375.1	Ray software v. 3	37254	46	10717950	256	63766115	5218, 14, KB272082:90533-100982	plot amaVit1
023	2013	anaPla1	GCF_000355885.1	SOAPdenovo Release v. 1.03	27792	43	2580234	401	91882502	1258, 1, KB745735:2510-5026	plot anaPla1
024	2014	ancCey1	GCA_000688135.1	Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2	55040	40	3358224	389.5	157542766	4183, 1, JARK01001394v1:846761-855127	plot ancCey1
025	2014	angJap1	GCA_000470695.1	CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta	546983	44	32365612	800	580570188	1181, 1, KI307522:56201-58563	plot angJap1
026	2007	anoCar1	tbd	tbd	751544	38	40990303	2923	4158391303	351, 1, scaffold_31:2142294-2142996	plot anoCar1
028	2003	anoGam1	tbd	tbd	75957	43	5353295	2383	356254048	1175, 1, chrX:14717656-14720006	plot anoGam1
029	2014	apaVit1	GCF_000703405.1	SOAPdenovo v. 1.6	24291	35	1216678	112	56084043	453, 1, KL385068:59340-60246	plot apaVit1
030	2004	apiMel1	tbd	tbd	83149	38	3897116	280	81345069	203, 1, GroupUn.6971:896-1302	plot apiMel1
031	2005	apiMel2	tbd	tbd	91284	38	4467103	295	110415978	234, 1, Group8:8120781-8121249	plot apiMel2
032	2005	apiMel3	tbd	tbd	100380	38	5142600	318	146199642	234, 1, Group8:9788059-9788527	plot apiMel3
033	2010	apiMel4	GCF_000002195.4	Atlas assembly system v. before 2011	101842	38	5017659	328	182902657	234, 1, Group8:11123745-11124213	plot apiMel4
034	2008	aplCal1	tbd	tbd	362965	33	14931570	1162	1691576982	254, 1, scaffold_486:233208-233716	plot aplCal1
035	2014	aptFor1	GCF_000699145.1	SOAPdenovo v. 1.6	107781	59	13547646	120	162744750	2370, 1, KL225745:613720-618460	plot aptFor1
036	2015	aptMan1	GCF_001039765.1	tbd	282012	72	84603242	159	396269019	13772, 1, NW_013987314v1:1452350-1479894	plot aptMan1
037	2014	aquChr1	GCA_000696035.1	ABySS v. 1.3.6	91231	42	4160856	43	70439237	98, 1, KK848043:4630547-4630743	plot aquChr1
038	2014	aquChr2	GCA_000766835.1	AllPaths-LG v. August 2013	27433	39	1833575	548	117223799	6351, 4, KN265844v1:264833-277538	plot aquChr2
039	1880	araTha1	GCF_000001735.3	tbd	42547	40	2336394	4141	237921318	415, 1, chr3:12226092-12226922	plot araTha1
040	2012	ascSuu1	GCA_000298755.1	SOAPdenovo v. 1.04	26863	62	2864530	136	30068625	680, 1, JH878990v1:516922-518282	plot ascSuu1
041	2013	astMex1	GCF_000372685.1	AllPathsLG v. Jan-2013	300773	36	13069886	344	878056894	647, 1, KB872443:19678-20972	plot astMex1
042	2014	balPav1	GCA_000709895.1	SOAPdenovo v. 1.6	17941	37	1027192	127	51713556	375, 1, KL478702:45795-46545	plot balPav1
043	2008	braFlo2	tbd	tbd	335984	40	21237833	1088	1244816809	1512, 1, Bf_V2_32:3091839-3094863	plot braFlo2
044	1880	braRap1	GCF_000309985.1	SOAPdenovo v. 1.04	74411	41	5348931	2750	314357742	1288, 2, chrA5:13328835-13331412	plot braRap1
045	2007	bruMal1	tbd	tbd	70008	37	3314327	264	46555408	321, 1, Bmal_supercontigDegenerate10576:240-882	plot bruMal1
046	2014	bruMal2	tbd	tbd	72743	38	3759073	402	111607550	453, 1, Bmal_v3_scaffold8088:119-1025	plot bruMal2
047	2014	bucRhi1	GCF_000710305.1	SOAPdenovo v. 1.6	43210	56	3393282	73	48672532	715, 1, KL533494:44624-46054	plot bucRhi1
049	2011	burXyl1	tbd	tbd	12719	36	772590	1694	51888226	134, 1, scaffold01254:876286-876554	plot burXyl1
050	2010	caeAng1	GCA_000165025.1	Velvet v. 0.7.56	100045	42	4176946	305	156635287	71, 1, scafRNAPATHr22140:12806-12948	plot caeAng1
051	2012	caeAng2	tbd	tbd	148180	41	6380576	369	202631392	131, 1, Cang_2012_03_13_00262:54689-54951	plot caeAng2
052	2008	caeJap1	tbd	tbd	54911	37	2702441	669	184995823	179, 1, chrUn:91344286-91344644	plot caeJap1
053	2009	caeJap2	tbd	tbd	61394	38	3566172	1128.5	219090212	153, 1, chrUn:143662847-143663153	plot caeJap2
054	1880	caeJap2a	tbd	tbd	59499	38	3480262	973	192672580	153, 1, Cjap_Contig3098:12088-12394	plot caeJap2a
055	2010	caeJap3	tbd	tbd	47394	36	2103165	360	75708219	176, 1, ABLE03028834:844-1196	plot caeJap3
056	2010	caeJap4	GCA_000147155.1	Celera assembler v. 6.0	66567	37	3336966	815	226847582	176, 1, Scaffold17893:329482-329834	plot caeJap4
057	2007	caePb1	tbd	tbd	67100	38	3590813	2009	281616954	168, 1, chrUn:161968878-161969214	plot caePb1
058	2008	caePb2	tbd	tbd	71710	39	3958202	3788.5	420907669	239, 1, chrUn:97561553-97562031	plot caePb2
059	2010	caePb3	GCA_000143925.2	PCAP v. 9/3/04	71721	39	3951441	3770	420080585	239, 1, Scfld02_132:346628-347106	plot caePb3
060	2005	caeRem1	tbd	tbd	78288	40	4264984	1786	318215569	193, 1, SuperCont3184:2552-2938	plot caeRem1
061	2006	caeRem2	tbd	tbd	102926	41	5484074	859	350685995	193, 1, chrUn:145434398-145434784	plot caeRem2
062	2007	caeRem3	tbd	tbd	69306	40	3736990	2408	318941600	181, 1, chrUn:147913992-147914354	plot caeRem3
063	2007	caeRem4	GCF_000149515.1	tbd	70702	39	3779779	2320	319257206	181, 1, Crem_Contig169:93478-93840	plot caeRem4
064	2010	caeSp111	GCA_000186765.1	Celera assembler v. 6.0	16576	36	783303	2230.5	70961296	161, 1, Scaffold630:3047861-3048183	plot caeSp111
065	2012	caeSp51	tbd	tbd	20559	36	877191	1869	57741956	109, 1, Csp5_scaffold_04217:6885-7103	plot caeSp51
066	2010	caeSp91	tbd	tbd	67737	36	3110776	1418	221671479	195, 1, Scaffold7109:118818-119208	plot caeSp91
067	2014	calAnn1	GCF_000699085.1	SOAPdenovo v. 1.6	115073	39	9049123	590	450885170	1104, 1, KL218440:2851016-2853224	plot calAnn1
068	2013	calMil1	GCF_000165045.1	Celera v. 6.1	365912	35	15637123	1428	1794921679	144, 1, KI635985:586597-586885	plot calMil1
069	2005	canHg12	tbd	tbd	33765	35	1344552	617	139440788	121, 1, 12:76878573-76878815	plot canHg12
070	2014	capCar1	GCF_000700745.1	SOAPdenovo v. 1.6	63810	36	3017510	389.5	221999357	1265, 2, KL360999:16916-19447	plot capCar1
071	2014	carCri1	GCF_000690535.1	SOAPdenovo v. 1.6	20461	37	1163337	68	30549622	529, 1, KK515247:46620-47678	plot carCri1
072	2002	cb1	tbd	tbd	36051	37	2442691	558	98718219	191, 1, chrUn:90311348-90311730	plot cb1
073	2005	cb2	tbd	tbd	35978	37	2444306	560	98588417	317, 1, chrIII:126724-127358	plot cb2
074	2007	cb3	tbd	tbd	35990	37	2451574	568.5	99618994	317, 1, chrIII:11646590-11647224	plot cb3
075	2011	cb4	tbd	tbd	36155	37	2519414	578	100960462	317, 1, chrIII:76433-77067	plot cb4
076	2010	ce10	tbd	tbd	33806	38	1760308	427	82769023	1500, 1, chrIV:5554976-5557976	plot ce10
077	2013	ce11	GCF_000002985.6	tbd	33816	38	1760641	427	82800067	1500, 1, chrIV:5554985-5557985	plot ce11
078	2004	ce2	tbd	tbd	33799	38	1759889	427	82752389	1500, 1, chrIV:5554978-5557978	plot ce2
079	2005	ce3	tbd	tbd	33799	38	1759889	427	82752398	1500, 1, chrIV:5554972-5557972	plot ce3
080	2007	ce4	tbd	tbd	33792	38	1759610	427	82743753	1500, 1, chrIV:5554972-5557972	plot ce4
081	2007	ce5	tbd	tbd	33794	38	1759781	427	82743927	1500, 1, chrIV:5554972-5557972	plot ce5
082	2008	ce6	tbd	tbd	33794	38	1759781	427	82743927	1500, 1, chrIV:5554972-5557972	plot ce6
083	2009	ce7	tbd	tbd	33806	38	1760308	427	82769007	1500, 1, chrIV:5554972-5557972	plot ce7
084	2009	ce8	tbd	tbd	33806	38	1760308	427	82769007	1500, 1, chrIV:5554972-5557972	plot ce8
085	2010	ce9	tbd	tbd	33806	38	1760308	427	82769007	1500, 1, chrIV:5554972-5557972	plot ce9
086	2014	chaVoc1	GCF_000708025.1	SOAPdenovo v. 1.6	53439	41	4896801	1813	256127930	1729, 2, KL408233:1252791-1256250	plot chaVoc1
087	2014	chaVoc2	GCF_000708025.1	SOAPdenovo v. 1.6	53430	41	4896157	1812	256095280	1729, 2, KL871243:1252791-1256250	plot chaVoc2
088	2014	chlUnd1	GCF_000695195.1	SOAPdenovo v. 1.6	28454	43	1824188	165	94696650	497, 1, KK750077:105999-106993	plot chlUnd1
089	2002	ci1	GCA_000183065.1	tbd	48663	39	2653274	626	122189601	486, 1, Scaffold_604:30085-31057	plot ci1
090	2005	ci2	tbd	tbd	119965	43	8287326	1961	566064667	358, 1, scaffold_83:159982-160698	plot ci2
091	2011	ci3	GCF_000224145.1	tbd	48178	39	2574684	692	149951145	486, 1, chrUn_NW_004190340v1:65099-66071	plot ci3
092	2003	cioSav1	tbd	tbd	123843	39	6363601	2503	618224769	189, 1, ps_297:30448-30826	plot cioSav1
093	2005	cioSav2	tbd	tbd	157468	38	7731855	2875	819500559	280, 1, reftig_238:125039-125599	plot cioSav2
094	2013	colLiv1	GCF_000337935.1	SOAPdenovo v. 2.0	139510	33	6394287	112	419571584	3080, 2, KB375367:1029739-1035900	plot colLiv1
095	2014	colStr1	GCF_000690715.1	SOAPdenovo v. 1.6	55406	40	3066780	131	154687137	309, 1, KK533057:6873-7491	plot colStr1
096	2012	conCri1	GCF_000260355.1	AllPaths v. 2012	253120	35	11854934	7807	2109955223	265, 1, JH655888:40209348-40209878	plot conCri1
097	2014	corBra1	GCF_000691975.1	SOAPdenovo v. 1.6	91630	37	6371852	297	248570100	1583, 1, KK718913:5901493-5904659	plot corBra1
098	2014	corCor1	GCF_000738735.1	AllPaths v. Allpaths-LG version 41687	58556	36	3043376	370	184023111	1935, 1, KL997525:15617964-15621834	plot corCor1
099	2013	cotJap1	GCA_000511605.1	Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2	7329	33	280548	75	2914174	214, 1, DF262918:84572-85000	plot cotJap1
100	2014	cucCan1	GCF_000709325.1	SOAPdenovo v. 1.6	126008	42	16101261	2142	633238955	2278, 1, KL448309:4464943-4469499	plot cucCan1
101	2014	cynSem1	GCF_000523025.1	SOAPdenovo v. April-2011	83655	37	6369004	261	184971677	1536, 1, chr1:16715796-16718868	plot cynSem1
102	2014	cypVar1	GCA_000732505.1	AllPaths v. May 2014	136313	39	9823682	1299	502219020	2138, 1, KL652705:564642-568918	plot cypVar1
103	2014	danRer10	GCF_000002035.5	tbd	830199	36	39955973	1138	3506165088	829, 1, chr7:19536660-19538318	plot danRer10
104	2007	danRer5	tbd	tbd	878638	36	43432292	1103	3637100049	829, 1, chr7:21951036-21952694	plot danRer5
105	2008	danRer6	tbd	tbd	1054071	36	55306251	1381	4517471825	2083, 1, chr10:31284766-31288932	plot danRer6
106	2010	danRer7	GCF_000002035.4	tbd	910457	36	43398798	1289	3925402743	829, 1, chr7:20946224-20947882	plot danRer7
107	2014	dicLab1	GCA_000689215.1	tbd	204757	36	11489728	924	691437386	841, 1, HG916851:32290203-32291885	plot dicLab1
108	2013	dirImm1	tbd	tbd	3309	36	316992	58	1820327	1613, 1, nDi_2_2_scaf00284:19002-22228	plot dirImm1
109	2003	dm1	tbd	tbd	12199	50	1260685	3445	60460276	3882, 2, chr2L:1894810-1902575	plot dm1
110	2004	dm2	tbd	tbd	13213	51	1372092	3723	67342596	3882, 2, chr2L:1893145-1900910	plot dm2
111	2006	dm3	tbd	tbd	113222	40	6787673	2412	622002007	3882, 2, chr2L:1893145-1900910	plot dm3
112	2014	dm6	GCF_000001215.4	tbd	48031	48	4403254	3448	254474999	3882, 2, chr2L:1893145-1900910	plot dm6
113	2003	dp2	tbd	tbd	16790	44	1110948	926	42217528	227, 1, Contig7446_Contig2444:1979445-1979899	plot dp2
114	2004	dp3	tbd	tbd	20334	44	1389766	1239	62703720	312, 1, chrU:9357988-9358612	plot dp3
115	2006	dp4	tbd	tbd	53060	46	3495255	2437	228127096	312, 1, Unknown_singleton_2460:32411-33035	plot dp4
116	2012	droAlb1	GCA_000298335.1	SOAPdenovo v. 1.04	126521	30	3970849	70	35343627	76, 1, JH853217:889-1041	plot droAlb1
117	2004	droAna1	tbd	tbd	67882	40	3659056	697	196198368	572, 1, 2446670:645-1789	plot droAna1
118	2005	droAna2	tbd	tbd	248263	42	14624595	918	748771139	572, 1, scaffold_13499:1095908-1097052	plot droAna2
119	2006	droAna3	GCF_000005115.1	tbd	246334	42	14515690	927	745835855	572, 1, scaffold_13499:1092668-1093812	plot droAna3
120	2013	droBia2	GCA_000233415.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	46906	42	2807408	2591	175612579	2241, 3, AFFD02006372:54233-58717	plot droBia2
121	2013	droBip2	GCA_000236285.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0	54693	39	2946335	1371	204354268	179, 1, KB463958:131929-132287	plot droBip2
122	2013	droEle2	GCA_000224195.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	34862	41	2092385	2187	135919965	270, 1, KB458613:1953986-1954526	plot droEle2
123	2005	droEre1	tbd	tbd	96336	44	5585722	674	191777516	359, 1, scaffold_1301:371-1089	plot droEre1
124	2006	droEre2	GCF_000005135.1	tbd	95081	44	5535640	676	190524603	359, 1, scaffold_1301:371-1089	plot droEre2
125	2013	droEug2	GCA_000236325.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	59111	40	3495099	1518	181127987	141, 1, KB464979:6084-6366	plot droEug2
126	2013	droFic2	GCA_000220665.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	21964	44	1418464	2380.5	83742114	190, 1, AFFG02001364:4041-4421	plot droFic2
127	2005	droGri1	tbd	tbd	458551	40	21432909	509	538034457	491, 1, scaffold_2211:899-1881	plot droGri1
128	2006	droGri2	GCF_000005155.2	tbd	302510	40	14467041	522	418546843	188, 1, scaffold_6592:1167-1543	plot droGri2
129	2013	droKik2	GCA_000224215.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	31358	41	1855833	1533.5	112074726	117, 1, KB459586:778466-778700	plot droKik2
130	2013	droMir2	GCA_000269505.2	Newbler v. 2.6	18368	45	1204033	1747	75101816	140, 1, chr2:3040735-3041015	plot droMir2
131	2004	droMoj1	tbd	tbd	69928	38	3220037	310	78711524	225, 1, contig_34282:247-697	plot droMoj1
132	2005	droMoj2	tbd	tbd	102140	41	5658627	1086	363630258	202, 1, scaffold_6540:14391223-14391627	plot droMoj2
133	2006	droMoj3	GCF_000005175.2	tbd	101230	41	5606832	1114	361818537	202, 1, scaffold_6540:14384339-14384743	plot droMoj3
134	2005	droPer1	GCF_000005195.2	tbd	75046	45	5536401	2595	325634621	580, 2, super_62:246420-247581	plot droPer1
135	2013	droPse3	GCF_000001765.3	PBJelly v. 12.8.2; Atlas genome assembly	53481	45	3494617	2480	231367590	312, 1, chrUn_CH674897_1:32411-33035	plot droPse3
136	2013	droRho2	GCA_000236305.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	68118	41	4002283	1672	235074913	205, 1, AFPP02028413:1419-1829	plot droRho2
137	2005	droSec1	GCA_000005215.1	tbd	127886	38	6652375	465	177925676	360, 1, super_6483:1086-1806	plot droSec1
138	2005	droSim1	tbd	tbd	47915	42	2874159	1400	171101666	217, 1, chr3R_random:168062-168496	plot droSim1
139	2014	droSim2	GCF_000754195.2	Velvet v. 1.1.04	10385	40	551061	466	26120972	217, 1, chrUn_NW_015496898v1:4674-5108	plot droSim2
140	2013	droSuz1	GCA_000472105.1	SOAPdenovo v. 2	117859	46	12342639	2277	517597655	4939, 1, KI419149:2637663-2647541	plot droSuz1
141	2013	droTak2	GCA_000224235.2	Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0	48870	41	2816693	2013	202395837	306, 1, AFFI02002878:4290-4902	plot droTak2
142	2004	droVir1	tbd	tbd	147648	35	6630839	429	239695710	244, 1, scaffold_0:5707381-5707869	plot droVir1
143	2005	droVir2	tbd	tbd	432783	30	17539885	481	757905036	244, 1, scaffold_13049:18877549-18878037	plot droVir2
144	2006	droVir3	GCF_000005245.1	tbd	407188	30	16757243	495	747769004	244, 1, scaffold_13049:18848863-18849351	plot droVir3
145	2006	droWil1	GCF_000005925.1	tbd	118355	42	7234894	1695	472632964	954, 1, scaffold_181130:9135849-9137757	plot droWil1
146	2006	droWil2	GCF_000005925.1	tbd	118240	42	7228999	1695	472142234	954, 1, CH964272:9135849-9137757	plot droWil2
147	2004	droYak1	tbd	tbd	81563	43	6228480	3752	459910434	851, 1, chr3L:24830341-24832043	plot droYak1
148	2005	droYak2	tbd	tbd	93441	45	6941572	3518	501527798	1122, 2, chrU:731511-733756	plot droYak2
149	2006	droYak3	GCF_000005975.2	tbd	85136	46	6497582	2641	404384429	1122, 2, chrUn_CH892674_1:731511-733756	plot droYak3
152	2014	egrGar1	GCF_000687185.1	SOAPdenovo v. 1.6	74371	43	9954381	893	271113520	2791, 1, KK500861:718810-724392	plot egrGar1
153	2014	esoLuc1	GCA_000721915.1	AllPaths v. 43500	309026	36	12717997	109	633934424	1803, 1, KL593524:286555-290161	plot esoLuc1
154	2006	euaGli13	tbd	tbd	85054	35	3561209	981	360128068	95, 1, 4-7:24024058-24024248	plot euaGli13
155	2014	eurHel1	GCF_000690775.1	SOAPdenovo v. 1.6	48033	41	2646849	3690	271468700	462, 1, KK561721:27808-28732	plot eurHel1
156	2006	eutHer13	tbd	tbd	75114	37	3312319	1220	345926827	125, 1, 5-6:21163986-21164236	plot eutHer13
157	2013	falChe1	GCF_000337975.1	SOAPdenovo v. 1.4	33448	36	3028131	144	71160661	1589, 1, KB397979:787306-790484	plot falChe1
158	2013	falPer1	GCF_000337955.1	SOAPdenovo v. 1.4	32904	38	2747346	156	69981752	1888, 1, KB390863:6987566-6991342	plot falPer1
159	2002	fr1	tbd	tbd	65564	35	3413218	165	124234021	304, 1, chrUn:169005183-169005791	plot fr1
160	2004	fr2	tbd	tbd	104956	35	5519798	156	261084207	151, 1, chrUn:356162839-356163141	plot fr2
161	2011	fr3	GCF_000180615.1	tbd	105765	35	5702900	157	257018230	151, 1, HE592488:202-504	plot fr3
162	2014	fulGla1	GCF_000690835.1	SOAPdenovo v. 1.6	20338	37	1197675	93	36399474	576, 1, KK595554:8470-9622	plot fulGla1
163	2010	gadMor1	GCA_000231765.1	tbd	523023	30	17042881	24	573821154	131, 1, HE571852:62524-62786	plot gadMor1
164	2004	galGal2	tbd	tbd	157813	51	15224008	3723	846924205	208, 1, chr2:94743278-94743694	plot galGal2
165	2006	galGal3	tbd	tbd	243371	62	25066425	3004	1138149811	208, 1, chr2:97262115-97262531	plot galGal3
166	2011	galGal4	GCF_000002315.3	Celera Assembler v. 5.4	78961	39	4732239	2968	493569103	17591, 16, chrZ:21320544-21355741	plot galGal4
167	2015	galGal5	GCF_000002315.4	MHAP/PBcR v. 8.2beta	985564	36	47990278	1925	3490824745	17591, 16, chrZ:21461674-21496871	plot galGal5
168	2006	gasAcu1	tbd	tbd	131262	39	7836949	3635	770629287	296, 1, chrUn:59780312-59780904	plot gasAcu1
169	1880	gasAsc0	GCA_000180675.1	tbd	116031	39	6613325	1417	518945407	316, 1, contig_16726:674-1306	plot gasAsc0
170	2014	gavSte1	GCF_000690875.1	SOAPdenovo v. 1.6	24295	36	1352476	75	47417993	302, 1, KK611813:2739-3343	plot gavSte1
171	2012	geoFor1	GCF_000277835.1	SOAPdenovo v. 2.01	113187	37	6785044	204	268468600	1013, 1, JH739970:2776008-2778034	plot geoFor1
172	2006	gliRes13	tbd	tbd	31976	36	1385928	1661	143989628	95, 1, 4-7:15697982-15698172	plot gliRes13
173	2016	gorGor5	tbd	tbd	3555119	33	133654191	4102	21270991545	338, 1, CYUI01005848v1:13590-14266	plot gorGor5
174	2009	haeCon1	tbd	tbd	109810	42	5802860	1251.5	319005845	196, 1, Hcon_Contig0025586:3955-4347	plot haeCon1
175	2013	haeCon2	tbd	tbd	53818	43	3892613	570	187299643	2147, 1, scaffold_1557:10532-14826	plot haeCon2
176	2014	halAlb1	GCF_000691405.1	SOAPdenovo v. 1.6	13685	36	754065	301	41720730	548, 2, KK653364:30569-31666	plot halAlb1
177	2014	halLeu1	GCF_000737465.1	SOAPdenovo2 v. May 2014	16099	40	1241068	4586	98353830	79, 1, KL869431:1084034-1084192	plot halLeu1
178	2011	hapBur1	GCF_000239415.1	ALLPATHS-LG v. R35951	34584	37	2342045	3524.5	202958431	10390, 20, JH425331:1373378-1394177	plot hapBur1
179	2011	hetBac1	GCA_000223415.1	Celera assembler v. 6.0	3302	51	353946	673	12041725	317, 1, GL996135v1:102345-102979	plot hetBac1
180	1880	homNea0	tbd	tbd	148	30	4725	14.5	2669	37, 1, 151586_3339_2553:20-94	plot homNea0
182	2006	lauRas13	tbd	tbd	43311	36	1891314	1493	210427636	125, 1, 5-6:22761072-22761322	plot lauRas13
183	2014	lepDis1	GCF_000691785.1	SOAPdenovo v. 1.6	16795	33	749994	94	31438992	199, 1, JJRK01010260:4452-4850	plot lepDis1
184	2011	lepOcu1	GCF_000242695.1	AllPaths v. R38293	77276	37	4579890	1084	350156295	488, 2, chrLG5:14840992-14841969	plot lepOcu1
185	2013	letCam1	GCA_000466285.1	Newbler v. 2.7	768187	35	32420899	153	1525909318	207, 1, KE997215:997-1411	plot letCam1
186	1880	linHum0	GCF_000217595.1	CABOG v. 5.3	42080	41	2313367	5018	259661061	101, 1, NW_012160424:64875-65077	plot linHum0
187	2012	loaLoa1	GCA_000183805.3	Newbler v. 2.1-PreRelease-4/28/2009	15889	37	1294459	188	16478676	109, 1, JH717180v1:404-622	plot loaLoa1
188	2014	manVit1	GCF_000692015.1	SOAPdenovo v. 1.6	75103	35	4570292	206	245456943	5268, 1, KK733349:4046063-4056599	plot manVit1
190	2012	mayZeb1	GCF_000238955.1	AllPaths v. R37043	48899	38	3205287	4159	307830483	9605, 105, JH720664:938440-957754	plot mayZeb1
191	2009	melGal1	tbd	tbd	25253	45	1794885	2825	133788059	169, 1, chr3:54352580-54352918	plot melGal1
192	2014	melGal5	GCF_000146605.2	MaSuRCA v. 1.9.2	101903	36	4643970	197	188019328	173, 1, chrUn_NW_011217171v1:1-347	plot melGal5
193	2008	melHap1	GCA_000172435.1	tbd	12515	41	832837	375	21806223	157, 1, MhA1_Contig2844:850-1164	plot melHap1
194	2008	melInc1	GCA_000180415.1	tbd	19330	40	1244828	558	47252172	183, 1, Minc_Contig6373:3669-4035	plot melInc1
195	2008	melInc2	tbd	tbd	22743	41	1594354	1067	83086394	183, 1, MiV1ctg2756:3669-4035	plot melInc2
196	2011	melUnd1	GCF_000238935.1	Celera v. 6.1	99875	41	5463070	6271	754338919	120, 1, JH556605:5210251-5210491	plot melUnd1
197	2014	merNub1	GCF_000691845.1	SOAPdenovo v. 1.6	37279	43	2280064	174	103616988	543, 1, KK705997:21022-22108	plot merNub1
198	2014	mesUni1	GCF_000695765.1	SOAPdenovo v. 1.6	52863	36	2585696	257	120590969	271, 1, JJRI01098248:16372-16914	plot mesUni1
199	2013	musDom2	GCF_000371365.1	AllPathsLG v. September 2012	575203	36	27589830	1941	2513509860	2028, 1, KB856326:64184-68240	plot musDom2
200	2013	necAme1	GCF_000507365.1	Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010	30870	43	1735538	1580	123448969	93, 1, KI659398v1:132-318	plot necAme1
201	2007	nemVec1	tbd	tbd	540729	40	30645450	589	1501673463	353, 1, scaffold_201:423580-424286	plot nemVec1
202	2011	neoBri1	GCF_000239395.1	ALLPATHS-LG v. R36800	62939	46	6697998	1655	274117853	8242, 20, JH422273:8382583-8399086	plot neoBri1
203	2014	nipNip1	GCF_000708225.1	SOAPdenovo v. 1.6	32623	43	3676893	251	104452416	1496, 1, KL409846:432608-435600	plot nipNip1
204	2014	notCor1	GCF_000735185.1	Celera Assembler v. 7.0	164483	34	7109993	199	393266432	407, 1, KL665414:596304-597118	plot notCor1
205	2013	oncVol1	GCA_000499405.1	tbd	5247	39	423838	2124	28089581	739, 1, HG738137v1:12037947-12039425	plot oncVol1
206	2014	opiHoa1	GCF_000692075.1	SOAPdenovo v. 1.6	75782	40	6783674	4083	456471575	1119, 1, KK734928:246587-248825	plot opiHoa1
207	2011	oreNil1	tbd	tbd	80799	39	4892346	6067	586359236	9755, 32, GL831139:3510855-3530396	plot oreNil1
208	2006	oryLat1	tbd	tbd	191645	40	12487530	1210	620191379	379, 1, chr9:5041681-5042439	plot oryLat1
209	2005	oryLat2	tbd	tbd	189087	40	12356700	1234	592910738	379, 1, chr9:5041681-5042439	plot oryLat2
210	2013	panRed1	GCA_000341325.1	Velvet v. 1.2.07	23300	42	1084666	1396	66559726	101, 1, KB454925:8492-8694	plot panRed1
211	2014	pelCri1	GCF_000687375.1	SOAPdenovo v. 1.6	42891	37	2053042	265	127612523	574, 1, KK474798:35527-36675	plot pelCri1
212	2007	petMar1	tbd	tbd	855653	36	38339527	201	932728649	362, 1, Contig99174:237-961	plot petMar1
213	2010	petMar2	GCA_000148955.1	Arachne v. 3.2	836219	37	38092404	692	2324558773	363, 1, GL498477:1987-2713	plot petMar2
214	2014	phaCar1	GCF_000708925.1	SOAPdenovo v. 1.6	41541	34	1992939	36	26355615	779, 1, KL418261:30029-31587	plot phaCar1
215	2014	phaLep1	GCF_000687285.1	SOAPdenovo v. 1.6	26611	38	1718609	216	85779441	1077, 1, KK455387:47187-49341	plot phaLep1
216	2014	phoRub1	GCA_000687265.1	SOAPdenovo v. 1.6	17140	43	1055248	135	39934970	526, 1, KK424259:7588-8640	plot phoRub1
217	2014	picPub1	GCF_000699005.1	SOAPdenovo v. 1.6	397798	36	17968999	7796	3299119050	4915, 3, KL215520:252741-262573	plot picPub1
218	2013	poeFor1	GCF_000485575.1	AllPaths-LG v. July 2013	161806	52	28441594	4650	990605574	1886, 1, KI520679:7484-11256	plot poeFor1
219	2014	poeRet1	tbd	tbd	71291	38	4816409	1511	343849361	8790, 4, chrLG5:27506035-27523618	plot poeRet1
220	2014	priExs1	tbd	tbd	33878	44	2639333	1128	98936342	1626, 1, scaffold830:51430-54682	plot priExs1
221	2007	priPac1	tbd	tbd	29257	43	1929264	448	80615899	500, 1, chrUn:71534792-71535792	plot priPac1
222	2008	priPac2	GCA_000180635.1	tbd	19318	39	1050200	259	25863820	500, 1, ABKE01002096:3239-4239	plot priPac2
223	2014	priPac3	tbd	tbd	36759	40	2176431	321	82136541	500, 1, Ppa_Contig5:941324-942324	plot priPac3
224	2013	pseHum1	GCF_000331425.1	SOAPdenovo v. 1.5	140033	36	7836448	130	200423267	7517, 10, KB221191:4083820-4098863	plot pseHum1
225	2014	pteGut1	GCF_000699245.1	SOAPdenovo v. 1.6	41594	36	2007893	100	106772284	534, 1, JMFR01060883:1891-2959	plot pteGut1
226	2011	punNye1	GCF_000239375.1	ALLPATHS-LG v. R37016	36249	38	2385815	3630	214952201	5131, 20, JH419262:1608400-1618681	plot punNye1
227	2014	pygAde1	GCA_000699105.1	SOAPdenovo v. 1.6	38534	46	4145677	2165.5	202245057	2147, 1, KL225502:93242-97536	plot pygAde1
228	2013	pytBiv1	GCF_000186305.1	Soap deNovo v. March 2012	167510	47	14323626	217	396468667	235, 1, KE953144:259222-259692	plot pytBiv1
229	2012	repBase0	tbd	tbd	54	39	2426	81.5	7619	70, 1, MER51A:232-372	plot repBase0
230	2012	repBase1	tbd	tbd	73	39	3249	77	9691	70, 1, MER51A:232-372	plot repBase1
231	1880	repBase2	tbd	tbd	51	40	2203	79	6907	70, 1, MER51A:232-372	plot repBase2
233	1880	ricCom1	GCF_000151685.1	tbd	430308	35	18638247	2948	2156357980	460, 1, EQ974418:17730-18650	plot ricCom1
234	2016	rouAeg1	GCF_001466805.2	SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0	74090	36	4591683	5517	522939887	410, 2, NW_015493119v1:122550-123371	plot rouAeg1
235	2003	sacCer1	tbd	tbd	666	45	76615	1914.5	2711249	50, 1, chr7:519107-519207	plot sacCer1
236	2008	sacCer2	tbd	tbd	669	45	76812	1868	2711600	71, 1, chrX:120898-121040	plot sacCer2
237	2011	sacCer3	GCF_000146045.2	tbd	669	45	78716	1868	2711582	1988, 10, chrVIII:212266-216251	plot sacCer3
238	2013	sebNig1	GCA_000475235.1	tbd	344468	43	18020844	94	249080272	492, 1, AUPR01114153:357-1341	plot sebNig1
239	2013	sebRub1	GCA_000475215.1	SOAPdenovo v. 1.05	299208	38	14417679	139	352997550	408, 1, KI445670:61530-62346	plot sebRub1
240	2014	stePar1	GCF_000690725.1	ALLPATHS-LG v. August 2013	96483	40	8151514	3673	549500672	2624, 1, KK581067:134955-140203	plot stePar1
241	1880	strCam0	tbd	tbd	23662	45	2730974	666	94888209	1134, 1, superscaffold9:6014874-6017142	plot strCam0
242	2014	strCam1	GCF_000698965.1	SOAPdenovo v. 1.6	23599	45	2718563	646	93976596	1134, 1, KL206988:717376-719644	plot strCam1
243	2005	strPur1	tbd	tbd	658932	40	35574440	847.5	1824767726	956, 1, Scaffold18311:2619-4531	plot strPur1
244	2006	strPur2	tbd	tbd	611722	39	30968979	1453	2323533345	956, 1, Scaffold47464:201872-203784	plot strPur2
245	2009	strPur3	tbd	tbd	689739	40	35781206	1763	2733632009	956, 1, Scaffold85:237230-239142	plot strPur3
246	2011	strPur4	GCF_000002235.3	Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement	888256	42	54558021	2360	3918297070	956, 1, Scaffold382:244159-246071	plot strPur4
247	2011	strRat1	tbd	tbd	9910	40	540468	1077	26058414	113, 1, RATTI_contig_57682:4110-4336	plot strRat1
248	2014	strRat2	GCA_001040885.1	tbd	8546	41	482721	2233	37502032	67, 1, chrUn_LN609483v1:243-377	plot strRat2
250	1880	taeGut0	tbd	tbd	597003	49	43955858	3833	2936709220	209, 1, Contig47:5328655-5329073	plot taeGut0
251	2008	taeGut1	tbd	tbd	602657	49	44658308	3557	2849213000	209, 1, chrZ:28813941-28814359	plot taeGut1
252	2013	taeGut2	GCF_000151805.1	PCAP v. 2008	602028	49	44591081	3541	2830875406	209, 1, chrZ:28813941-28814359	plot taeGut2
254	2013	takFla1	GCA_000400755.1	HAPs v. 0.2.2	97724	36	6776388	184	251435705	503, 1, KE121297:329-1335	plot takFla1
255	2014	tauEry1	GCF_000709365.1	SOAPdenovo v. 1.6	58294	35	2621924	2194	291694166	227, 1, JNOY01082112:3268-3722	plot tauEry1
256	2004	tetNig1	tbd	tbd	132260	38	9178877	3055	661840431	413, 1, chrUn_random:43732955-43733781	plot tetNig1
257	2007	tetNig2	tbd	tbd	130250	38	9072570	3013	657839855	413, 1, chrUn_random:35610230-35611056	plot tetNig2
258	2014	tinGut1	GCF_000705375.1	SOAPdenovo v. 1.6	43221	38	2742653	279	110109614	416, 1, KL400833:106660-107492	plot tinGut1
259	2014	tinGut2	GCF_000705375.1	SOAPdenovo v. 1.6	43210	38	2741340	279	110101482	416, 1, KL895505:106660-107492	plot tinGut2
260	2005	triCas1	tbd	tbd	78796	41	4117576	794	170185880	307, 1, Reptig797:115-729	plot triCas1
261	2005	triCas2	tbd	tbd	77889	41	4122780	885	196279053	192, 1, singleUn_1374:29986-30370	plot triCas2
262	2011	triSpi1	GCF_000181795.1	PCAP v. January 12, 2007	11343	54	1176023	4572	74727382	98, 1, GL622792v1:5540185-5540381	plot triSpi1
263	2014	triSui1	GCA_000701005.1	SOAPdenovo v. 2	17372	45	1593967	2042.5	75416120	501, 1, KL363185v1:221782-222784	plot triSui1
264	2014	tytAlb1	GCF_000687205.1	SOAPdenovo v. 1.6	15140	33	776246	81	23744286	199, 1, JJRD01024771:5513-5911	plot tytAlb1
265	2004	xenTro1	tbd	tbd	1073717	40	65548900	216	2854287515	347, 1, scaffold_3418:6326-7020	plot xenTro1
266	2005	xenTro2	tbd	tbd	1034566	40	64677537	219	2820134241	548, 1, scaffold_68:2539823-2540919	plot xenTro2
267	2009	xenTro3	tbd	tbd	1034357	40	64662644	219	2819484140	548, 1, GL172704:2539823-2540919	plot xenTro3
268	2012	xenTro7	GCF_000004195.2	ARACHNE v. 20071016_modified	1100470	39	53428011	229	2808691507	3560, 2, KB021656:75384527-75391648	plot xenTro7
269	2016	xenTro9	GCF_000004195.3	Meraculous v. May-2013	967829	39	47452193	241	2585384269	3560, 2, chr6:35780447-35787568	plot xenTro9
270	2012	xipMac1	GCF_000241075.1	PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010	39708	35	1764516	506	136874274	119, 1, JH557910:3615-3853	plot xipMac1
272	2013	zonAlb1	GCF_000385455.1	Allpaths-LG v. Feb-2013	220251	35	9228906	369	407868591	2060, 1, KB913045:8123897-8128017	plot zonAlb1

assemblies with zero duplicate gap sequences

count	year	dbName	ncbiAsmId	number of gaps	assembly method

TandemDups: Difference between revisions

Revision as of 01:27, 21 May 2017

Contents

methods

table features

tandemDups table statistics

assemblies with zero duplicate gap sequences

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@@ Line 1: / Line 1: @@
 == methods ==
-The measurements are taken from the tandemDups.bed[.gz] file in
+These are measurements of identical paired sequences with a
-''/hive/data/genomes/<db>/bed/tandemDups/tandemDups.bed[.gz]''
+separation between the pairs of at least one nucleotide.
+The smallest size sequence in this survey is 30 bases, the
+largest separation considered was 20,000 bases.
+The procedure to find these sequences is as follows:
+* generate 29 base kmers for the entire genome, allow only kmers with bases: '''A C T G''', no '''N's''' allowed.
+* pair up identical kmers with at least one base separation and up to 20,000 bases separation.  This ''separation'' sequence is referred to here as the ''gap'' in this document.
+* collapse overlapping kmer pairs when they are the same size of sequence and the same spacing between the pairs.  This procedure preserves the definition of ''duplicated identical'' pairs.
+* the resulting pairs can now be longer sequences with smaller separation then the constituent pairs
+* final result selects sizes of 30 bases or more for the size of the paired sequence, and at least one base remaining as a separation gap.
+* collapsed pairs that close the gap are discarded.  They appear to indicate simple repeat sequences when this happens.  It would be interesting to have this result available, but that is not available at this time.
+The reason for starting with 29 base sized pairs and then selecting
+results of at least 30 base sized pairs results in a reasonable
+number of 30 base pairs.  If the procedure starts with 30 base
+sized pairs, it produces way too many 30 base kmer pairs for
+a reasonable count.
+The measurements are taken from the resulting db.tandemDups.bed[.gz] file in
+''/hive/data/genomes/<db>/bed/tandemDups/db.tandemDups.bed[.gz]''
 The ''score'' column in the bed file (column 5) is the size of
 the duplicated sequence.  The gap size between the duplicated
-sequence is calculated from: ''end - start + 2 * score''
+sequence is thus calculated from: ''end - start + 2 * score''
-The size of the duplicated sequence is between 30 bases and 1000 bases,
+This data is also available in the ''tandemDups'' table for sequences
-we are not checking for sizes outside that range.
+with genome browser databases.  Not all sequences measured here have
+genome browser databases.
 The ''item total'' is the sum of the sizes of the duplicated
@@ Line 14: / Line 34: @@
 amount of sequence involved in these repeats for both sides.
-The ''gap total'' is the sum of the sizes of all the gaps
+The ''gap total'' is the sum of the sizes of all the separation gaps
-involved.
+between the paired sequences.
 == table features==
@@ Line 25: / Line 45: @@
 The example item is a worst case example, where the ratio of dup
 sequence size to gap size is the highest, i.e. smallest gap with largest dup size
-These ends were found by taking 1,000 bases on each side of any run
-of N's in the sequence, thus any gap, and aligned with the blat command:
-  blat -q=dna -minIdentity=95 -repMatch=10 upstream.fa downstream.fa
-Filtering the PSL output for a perfect match, no mis-matches,
-and therefore of equal size matching sequence,
-where the alignment ends exactly at the end of the upstream sequence before
-the gap and begins exactly at the start of the downstream sequence after the gap.
 == tandemDups table statistics ==
@@ Line 102: / Line 113: @@
 |-
 | 022
+| 2013
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ GCA_000332375.1]
+| Ray software v. 3
+| style='text-align:right'| 37254
+| style='text-align:right'| 46
+| style='text-align:right'| 10717950
+| &nbsp;
+| style='text-align:right'| 256
+| style='text-align:right'| 63766115
+| 5218,	14,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1&position=KB272082:90533-100982 KB272082:90533-100982]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=amaVit1 plot amaVit1]
+|-
+| 023
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anaPla1 anaPla1]
@@ Line 115: / Line 140: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anaPla1 plot anaPla1]
 |-
-| 023
+| 024
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ancCey1 ancCey1]
@@ Line 129: / Line 154: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ancCey1 plot ancCey1]
 |-
-| 024
+| 025
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=angJap1 angJap1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000470695.1/ GCA_000470695.1]
+| CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta
+| style='text-align:right'| 546983
+| style='text-align:right'| 44
+| style='text-align:right'| 32365612
+| &nbsp;
+| style='text-align:right'| 800
+| style='text-align:right'| 580570188
+| 1181,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=angJap1&position=KI307522:56201-58563 KI307522:56201-58563]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=angJap1 plot angJap1]
+|-
+| 026
+| 2007
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar1 anoCar1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 751544
+| style='text-align:right'| 38
+| style='text-align:right'| 40990303
+| &nbsp;
+| style='text-align:right'| 2923
+| style='text-align:right'| 4158391303
+| 351,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar1&position=scaffold_31:2142294-2142996 scaffold_31:2142294-2142996]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoCar1 plot anoCar1]
+|-
+| 028
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoGam1 anoGam1]
@@ Line 143: / Line 196: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoGam1 plot anoGam1]
 |-
-| 025
+| 029
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apaVit1 apaVit1]
@@ Line 157: / Line 210: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apaVit1 plot apaVit1]
 |-
-| 026
+| 030
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel1 apiMel1]
@@ Line 171: / Line 224: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel1 plot apiMel1]
 |-
-| 027
+| 031
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel2 apiMel2]
@@ Line 185: / Line 238: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel2 plot apiMel2]
 |-
-| 028
+| 032
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel3 apiMel3]
@@ Line 199: / Line 252: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel3 plot apiMel3]
 |-
-| 029
+| 033
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel4 apiMel4]
@@ Line 213: / Line 266: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel4 plot apiMel4]
 |-
-| 030
+| 034
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aplCal1 aplCal1]
@@ Line 227: / Line 280: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aplCal1 plot aplCal1]
 |-
-| 031
+| 035
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptFor1 aptFor1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699145.1/ GCF_000699145.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 107781
+| style='text-align:right'| 59
+| style='text-align:right'| 13547646
+| &nbsp;
+| style='text-align:right'| 120
+| style='text-align:right'| 162744750
+| 2370,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptFor1&position=KL225745:613720-618460 KL225745:613720-618460]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aptFor1 plot aptFor1]
+|-
+| 036
+| 2015
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptMan1 aptMan1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001039765.1/ GCF_001039765.1]
+| tbd
+| style='text-align:right'| 282012
+| style='text-align:right'| 72
+| style='text-align:right'| 84603242
+| &nbsp;
+| style='text-align:right'| 159
+| style='text-align:right'| 396269019
+| 13772,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptMan1&position=NW_013987314v1:1452350-1479894 NW_013987314v1:1452350-1479894]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aptMan1 plot aptMan1]
+|-
+| 037
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr1 aquChr1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000696035.1/ GCA_000696035.1]
+| ABySS v. 1.3.6
+| style='text-align:right'| 91231
+| style='text-align:right'| 42
+| style='text-align:right'| 4160856
+| &nbsp;
+| style='text-align:right'| 43
+| style='text-align:right'| 70439237
+| 98,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr1&position=KK848043:4630547-4630743 KK848043:4630547-4630743]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aquChr1 plot aquChr1]
+|-
+| 038
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr2 aquChr2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000766835.1/ GCA_000766835.1]
+| AllPaths-LG v. August 2013
+| style='text-align:right'| 27433
+| style='text-align:right'| 39
+| style='text-align:right'| 1833575
+| &nbsp;
+| style='text-align:right'| 548
+| style='text-align:right'| 117223799
+| 6351,	4,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr2&position=KN265844v1:264833-277538 KN265844v1:264833-277538]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aquChr2 plot aquChr2]
+|-
+| 039
 | 1880
 | style='text-align:center;'| araTha1
@@ Line 241: / Line 350: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=araTha1 plot araTha1]
 |-
-| 032
+| 040
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1 ascSuu1]
@@ Line 255: / Line 364: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ascSuu1 plot ascSuu1]
 |-
-| 033
+| 041
+| 2013
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1 astMex1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000372685.1/ GCF_000372685.1]
+| AllPathsLG v. Jan-2013
+| style='text-align:right'| 300773
+| style='text-align:right'| 36
+| style='text-align:right'| 13069886
+| &nbsp;
+| style='text-align:right'| 344
+| style='text-align:right'| 878056894
+| 647,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1&position=KB872443:19678-20972 KB872443:19678-20972]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=astMex1 plot astMex1]
+|-
+| 042
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balPav1 balPav1]
@@ Line 269: / Line 392: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=balPav1 plot balPav1]
 |-
-| 034
+| 043
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=braFlo2 braFlo2]
@@ Line 283: / Line 406: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braFlo2 plot braFlo2]
 |-
-| 035
+| 044
 | 1880
 | style='text-align:center;'| braRap1
@@ Line 297: / Line 420: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braRap1 plot braRap1]
 |-
-| 036
+| 045
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal1 bruMal1]
@@ Line 311: / Line 434: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal1 plot bruMal1]
 |-
-| 037
+| 046
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2 bruMal2]
@@ Line 325: / Line 448: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal2 plot bruMal2]
 |-
-| 038
+| 047
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bucRhi1 bucRhi1]
@@ Line 339: / Line 462: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bucRhi1 plot bucRhi1]
 |-
-| 040
+| 049
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1 burXyl1]
@@ Line 353: / Line 476: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=burXyl1 plot burXyl1]
 |-
-| 041
+| 050
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng1 caeAng1]
@@ Line 367: / Line 490: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng1 plot caeAng1]
 |-
-| 042
+| 051
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2 caeAng2]
@@ Line 381: / Line 504: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng2 plot caeAng2]
 |-
-| 043
+| 052
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap1 caeJap1]
@@ Line 395: / Line 518: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap1 plot caeJap1]
 |-
-| 044
+| 053
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap2 caeJap2]
@@ Line 409: / Line 532: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2 plot caeJap2]
 |-
-| 045
+| 054
 | 1880
 | style='text-align:center;'| caeJap2a
@@ Line 423: / Line 546: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2a plot caeJap2a]
 |-
-| 046
+| 055
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap3 caeJap3]
@@ Line 437: / Line 560: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap3 plot caeJap3]
 |-
-| 047
+| 056
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4 caeJap4]
@@ Line 451: / Line 574: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap4 plot caeJap4]
 |-
-| 048
+| 057
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb1 caePb1]
@@ Line 465: / Line 588: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb1 plot caePb1]
 |-
-| 049
+| 058
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb2 caePb2]
@@ Line 479: / Line 602: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb2 plot caePb2]
 |-
-| 050
+| 059
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3 caePb3]
@@ Line 493: / Line 616: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb3 plot caePb3]
 |-
-| 051
+| 060
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem1 caeRem1]
@@ Line 507: / Line 630: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem1 plot caeRem1]
 |-
-| 052
+| 061
 | 2006
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem2 caeRem2]
@@ Line 521: / Line 644: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem2 plot caeRem2]
 |-
-| 053
+| 062
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem3 caeRem3]
@@ Line 535: / Line 658: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem3 plot caeRem3]
 |-
-| 054
+| 063
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem4 caeRem4]
@@ Line 549: / Line 672: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem4 plot caeRem4]
 |-
-| 055
+| 064
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111 caeSp111]
@@ Line 563: / Line 686: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp111 plot caeSp111]
 |-
-| 056
+| 065
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51 caeSp51]
@@ Line 577: / Line 700: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp51 plot caeSp51]
 |-
-| 057
+| 066
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp91 caeSp91]
@@ Line 591: / Line 714: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp91 plot caeSp91]
 |-
-| 058
+| 067
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calAnn1 calAnn1]
@@ Line 605: / Line 728: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calAnn1 plot calAnn1]
 |-
-| 059
+| 068
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calMil1 calMil1]
@@ Line 619: / Line 742: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calMil1 plot calMil1]
 |-
-| 060
+| 069
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canHg12 canHg12]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 33765
+| style='text-align:right'| 35
+| style='text-align:right'| 1344552
+| &nbsp;
+| style='text-align:right'| 617
+| style='text-align:right'| 139440788
+| 121,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canHg12&position=12:76878573-76878815 12:76878573-76878815]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canHg12 plot canHg12]
+|-
+| 070
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capCar1 capCar1]
@@ Line 633: / Line 770: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capCar1 plot capCar1]
 |-
-| 061
+| 071
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=carCri1 carCri1]
@@ Line 647: / Line 784: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=carCri1 plot carCri1]
 |-
-| 062
+| 072
 | 2002
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb1 cb1]
@@ Line 661: / Line 798: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb1 plot cb1]
 |-
-| 063
+| 073
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb2 cb2]
@@ Line 675: / Line 812: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb2 plot cb2]
 |-
-| 064
+| 074
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb3 cb3]
@@ Line 689: / Line 826: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb3 plot cb3]
 |-
-| 065
+| 075
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4]
@@ Line 703: / Line 840: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb4 plot cb4]
 |-
-| 066
+| 076
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce10 ce10]
@@ Line 717: / Line 854: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce10 plot ce10]
 |-
-| 067
+| 077
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11]
@@ Line 731: / Line 868: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce11 plot ce11]
 |-
-| 068
+| 078
 | 2004
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce2 ce2]
@@ Line 745: / Line 882: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce2 plot ce2]
 |-
-| 069
+| 079
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce3 ce3]
@@ Line 759: / Line 896: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce3 plot ce3]
 |-
-| 070
+| 080
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce4 ce4]
@@ Line 773: / Line 910: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce4 plot ce4]
 |-
-| 071
+| 081
 | 2007
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce5 ce5]
@@ Line 787: / Line 924: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce5 plot ce5]
 |-
-| 072
+| 082
 | 2008
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce6 ce6]
@@ Line 801: / Line 938: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce6 plot ce6]
 |-
-| 073
+| 083
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce7 ce7]
@@ Line 815: / Line 952: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce7 plot ce7]
 |-
-| 074
+| 084
 | 2009
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce8 ce8]
@@ Line 829: / Line 966: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce8 plot ce8]
 |-
-| 075
+| 085
 | 2010
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce9 ce9]
@@ Line 843: / Line 980: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce9 plot ce9]
 |-
-| 076
+| 086
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1 chaVoc1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 53439
+| style='text-align:right'| 41
+| style='text-align:right'| 4896801
+| &nbsp;
+| style='text-align:right'| 1813
+| style='text-align:right'| 256127930
+| 1729,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1&position=KL408233:1252791-1256250 KL408233:1252791-1256250]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc1 plot chaVoc1]
+|-
+| 087
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2 chaVoc2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 53430
+| style='text-align:right'| 41
+| style='text-align:right'| 4896157
+| &nbsp;
+| style='text-align:right'| 1812
+| style='text-align:right'| 256095280
+| 1729,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2&position=KL871243:1252791-1256250 KL871243:1252791-1256250]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc2 plot chaVoc2]
+|-
+| 088
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1 chlUnd1]
@@ Line 857: / Line 1,022: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlUnd1 plot chlUnd1]
 |-
-| 077
+| 089
 | 2002
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci1 ci1]
@@ Line 871: / Line 1,036: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci1 plot ci1]
 |-
-| 078
+| 090
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci2 ci2]
@@ Line 885: / Line 1,050: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci2 plot ci2]
 |-
-| 079
+| 091
 | 2011
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci3 ci3]
@@ Line 899: / Line 1,064: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci3 plot ci3]
 |-
-| 080
+| 092
 | 2003
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav1 cioSav1]
@@ Line 913: / Line 1,078: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav1 plot cioSav1]
 |-
-| 081
+| 093
 | 2005
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav2 cioSav2]
@@ Line 927: / Line 1,092: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav2 plot cioSav2]
 |-
-| 082
+| 094
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1]
@@ Line 941: / Line 1,106: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colLiv1 plot colLiv1]
 |-
-| 083
+| 095
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colStr1 colStr1]
@@ Line 955: / Line 1,120: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colStr1 plot colStr1]
 |-
-| 084
+| 096
+| 2012
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000260355.1/ GCF_000260355.1]
+| AllPaths v. 2012
+| style='text-align:right'| 253120
+| style='text-align:right'| 35
+| style='text-align:right'| 11854934
+| &nbsp;
+| style='text-align:right'| 7807
+| style='text-align:right'| 2109955223
+| 265,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1&position=JH655888:40209348-40209878 JH655888:40209348-40209878]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=conCri1 plot conCri1]
+|-
+| 097
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corBra1 corBra1]
@@ Line 969: / Line 1,148: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corBra1 plot corBra1]
 |-
-| 085
+| 098
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corCor1 corCor1]
@@ Line 983: / Line 1,162: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corCor1 plot corCor1]
 |-
-| 086
+| 099
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cotJap1 cotJap1]
@@ Line 997: / Line 1,176: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cotJap1 plot cotJap1]
 |-
-| 087
+| 100
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cucCan1 cucCan1]
@@ Line 1,011: / Line 1,190: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cucCan1 plot cucCan1]
 |-
-| 088
+| 101
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cynSem1 cynSem1]
@@ Line 1,025: / Line 1,204: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cynSem1 plot cynSem1]
 |-
-| 089
+| 102
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cypVar1 cypVar1]
@@ Line 1,039: / Line 1,218: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cypVar1 plot cypVar1]
 |-
-| 090
+| 103
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1 dicLab1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000689215.1/ GCA_000689215.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5/ GCF_000002035.5]
 | tbd
-| style='text-align:right'| 204757
+| style='text-align:right'| 830199
 | style='text-align:right'| 36
-| style='text-align:right'| 11489728
+| style='text-align:right'| 39955973
 | &nbsp;
-| style='text-align:right'| 924
+| style='text-align:right'| 1138
-| style='text-align:right'| 691437386
+| style='text-align:right'| 3506165088
-| 841,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1&position=HG916851:32290203-32291885 HG916851:32290203-32291885]
+| 829,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10&position=chr7:19536660-19538318 chr7:19536660-19538318]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dicLab1 plot dicLab1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer10 plot danRer10]
 |-
-| 091
+| 104
-| 2013
+| 2007
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5 danRer5]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 3309
+| style='text-align:right'| 878638
 | style='text-align:right'| 36
-| style='text-align:right'| 316992
+| style='text-align:right'| 43432292
 | &nbsp;
-| style='text-align:right'| 58
+| style='text-align:right'| 1103
-| style='text-align:right'| 1820327
+| style='text-align:right'| 3637100049
-| 1613,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1&position=nDi_2_2_scaf00284:19002-22228 nDi_2_2_scaf00284:19002-22228]
+| 829,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5&position=chr7:21951036-21952694 chr7:21951036-21952694]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dirImm1 plot dirImm1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer5 plot danRer5]
 |-
-| 092
+| 105
-| 2003
+| 2008
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1 dm1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6 danRer6]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 12199
+| style='text-align:right'| 1054071
-| style='text-align:right'| 50
+| style='text-align:right'| 36
-| style='text-align:right'| 1260685
+| style='text-align:right'| 55306251
 | &nbsp;
-| style='text-align:right'| 3445
+| style='text-align:right'| 1381
-| style='text-align:right'| 60460276
+| style='text-align:right'| 4517471825
-| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1&position=chr2L:1894810-1902575 chr2L:1894810-1902575]
+| 2083,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6&position=chr10:31284766-31288932 chr10:31284766-31288932]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm1 plot dm1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer6 plot danRer6]
 |-
-| 093
+| 106
-| 2004
+| 2010
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2 dm2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.4/ GCF_000002035.4]
 | tbd
-| style='text-align:right'| 13213
+| style='text-align:right'| 910457
-| style='text-align:right'| 51
+| style='text-align:right'| 36
-| style='text-align:right'| 1372092
+| style='text-align:right'| 43398798
 | &nbsp;
-| style='text-align:right'| 3723
+| style='text-align:right'| 1289
-| style='text-align:right'| 67342596
+| style='text-align:right'| 3925402743
-| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2&position=chr2L:1893145-1900910 chr2L:1893145-1900910]
+| 829,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=chr7:20946224-20947882 chr7:20946224-20947882]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm2 plot dm2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer7 plot danRer7]
 |-
-| 094
+| 107
-| 2006
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3 dm3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1 dicLab1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000689215.1/ GCA_000689215.1]
 | tbd
-| style='text-align:right'| 113222
+| style='text-align:right'| 204757
-| style='text-align:right'| 40
+| style='text-align:right'| 36
-| style='text-align:right'| 6787673
+| style='text-align:right'| 11489728
 | &nbsp;
-| style='text-align:right'| 2412
+| style='text-align:right'| 924
-| style='text-align:right'| 622002007
+| style='text-align:right'| 691437386
-| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3&position=chr2L:1893145-1900910 chr2L:1893145-1900910]
+| 841,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1&position=HG916851:32290203-32291885 HG916851:32290203-32291885]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm3 plot dm3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dicLab1 plot dicLab1]
 |-
-| 095
+| 108
-| 2014
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001215.4/ GCF_000001215.4]
+| style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 48031
+| style='text-align:right'| 3309
-| style='text-align:right'| 48
+| style='text-align:right'| 36
-| style='text-align:right'| 4403254
+| style='text-align:right'| 316992
 | &nbsp;
-| style='text-align:right'| 3448
+| style='text-align:right'| 58
-| style='text-align:right'| 254474999
+| style='text-align:right'| 1820327
-| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6&position=chr2L:1893145-1900910 chr2L:1893145-1900910]
+| 1613,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1&position=nDi_2_2_scaf00284:19002-22228 nDi_2_2_scaf00284:19002-22228]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm6 plot dm6]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dirImm1 plot dirImm1]
 |-
-| 096
+| 109
 | 2003
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2 dp2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1 dm1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 16790
+| style='text-align:right'| 12199
-| style='text-align:right'| 44
+| style='text-align:right'| 50
-| style='text-align:right'| 1110948
+| style='text-align:right'| 1260685
 | &nbsp;
-| style='text-align:right'| 926
+| style='text-align:right'| 3445
-| style='text-align:right'| 42217528
+| style='text-align:right'| 60460276
-| 227,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2&position=Contig7446_Contig2444:1979445-1979899 Contig7446_Contig2444:1979445-1979899]
+| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1&position=chr2L:1894810-1902575 chr2L:1894810-1902575]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp2 plot dp2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm1 plot dm1]
 |-
-| 097
+| 110
 | 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3 dp3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2 dm2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 20334
+| style='text-align:right'| 13213
-| style='text-align:right'| 44
+| style='text-align:right'| 51
-| style='text-align:right'| 1389766
+| style='text-align:right'| 1372092
 | &nbsp;
-| style='text-align:right'| 1239
+| style='text-align:right'| 3723
-| style='text-align:right'| 62703720
+| style='text-align:right'| 67342596
-| 312,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3&position=chrU:9357988-9358612 chrU:9357988-9358612]
+| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2&position=chr2L:1893145-1900910 chr2L:1893145-1900910]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp3 plot dp3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm2 plot dm2]
 |-
-| 098
+| 111
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3 dm3]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 53060
+| style='text-align:right'| 113222
-| style='text-align:right'| 46
+| style='text-align:right'| 40
-| style='text-align:right'| 3495255
+| style='text-align:right'| 6787673
 | &nbsp;
-| style='text-align:right'| 2437
+| style='text-align:right'| 2412
-| style='text-align:right'| 228127096
+| style='text-align:right'| 622002007
-| 312,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4&position=Unknown_singleton_2460:32411-33035 Unknown_singleton_2460:32411-33035]
+| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3&position=chr2L:1893145-1900910 chr2L:1893145-1900910]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp4 plot dp4]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm3 plot dm3]
 |-
-| 099
+| 112
-| 2012
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298335.1/ GCA_000298335.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001215.4/ GCF_000001215.4]
-| SOAPdenovo v. 1.04
+| tbd
-| style='text-align:right'| 126521
+| style='text-align:right'| 48031
-| style='text-align:right'| 30
+| style='text-align:right'| 48
-| style='text-align:right'| 3970849
+| style='text-align:right'| 4403254
 | &nbsp;
-| style='text-align:right'| 70
+| style='text-align:right'| 3448
-| style='text-align:right'| 35343627
+| style='text-align:right'| 254474999
-| 76,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1&position=JH853217:889-1041 JH853217:889-1041]
+| 3882,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6&position=chr2L:1893145-1900910 chr2L:1893145-1900910]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAlb1 plot droAlb1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm6 plot dm6]
 |-
-| 100
+| 113
-| 2004
+| 2003
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1 droAna1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2 dp2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 67882
+| style='text-align:right'| 16790
-| style='text-align:right'| 40
+| style='text-align:right'| 44
-| style='text-align:right'| 3659056
+| style='text-align:right'| 1110948
 | &nbsp;
-| style='text-align:right'| 697
+| style='text-align:right'| 926
-| style='text-align:right'| 196198368
+| style='text-align:right'| 42217528
-| 572,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1&position=2446670:645-1789 2446670:645-1789]
+| 227,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2&position=Contig7446_Contig2444:1979445-1979899 Contig7446_Contig2444:1979445-1979899]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna1 plot droAna1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp2 plot dp2]
 |-
-| 101
+| 114
-| 2005
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2 droAna2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3 dp3]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 248263
+| style='text-align:right'| 20334
-| style='text-align:right'| 42
+| style='text-align:right'| 44
-| style='text-align:right'| 14624595
+| style='text-align:right'| 1389766
 | &nbsp;
-| style='text-align:right'| 918
+| style='text-align:right'| 1239
-| style='text-align:right'| 748771139
+| style='text-align:right'| 62703720
-| 572,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2&position=scaffold_13499:1095908-1097052 scaffold_13499:1095908-1097052]
+| 312,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3&position=chrU:9357988-9358612 chrU:9357988-9358612]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna2 plot droAna2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp3 plot dp3]
 |-
-| 102
+| 115
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005115.1/ GCF_000005115.1]
+| style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 246334
+| style='text-align:right'| 53060
-| style='text-align:right'| 42
+| style='text-align:right'| 46
-| style='text-align:right'| 14515690
+| style='text-align:right'| 3495255
 | &nbsp;
-| style='text-align:right'| 927
+| style='text-align:right'| 2437
-| style='text-align:right'| 745835855
+| style='text-align:right'| 228127096
-| 572,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3&position=scaffold_13499:1092668-1093812 scaffold_13499:1092668-1093812]
+| 312,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4&position=Unknown_singleton_2460:32411-33035 Unknown_singleton_2460:32411-33035]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna3 plot droAna3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp4 plot dp4]
 |-
-| 103
+| 116
-| 2013
+| 2012
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000233415.2/ GCA_000233415.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000298335.1/ GCA_000298335.1]
-| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
+| SOAPdenovo v. 1.04
-| style='text-align:right'| 46906
+| style='text-align:right'| 126521
-| style='text-align:right'| 42
+| style='text-align:right'| 30
-| style='text-align:right'| 2807408
+| style='text-align:right'| 3970849
 | &nbsp;
-| style='text-align:right'| 2591
+| style='text-align:right'| 70
-| style='text-align:right'| 175612579
+| style='text-align:right'| 35343627
-| 2241,	3,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2&position=AFFD02006372:54233-58717 AFFD02006372:54233-58717]
+| 76,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1&position=JH853217:889-1041 JH853217:889-1041]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBia2 plot droBia2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAlb1 plot droAlb1]
 |-
-| 104
+| 117
-| 2013
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1 droAna1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236285.2/ GCA_000236285.2]
+| style='text-align:center;'| tbd
-| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0
+| tbd
-| style='text-align:right'| 54693
+| style='text-align:right'| 67882
-| style='text-align:right'| 39
+| style='text-align:right'| 40
-| style='text-align:right'| 2946335
+| style='text-align:right'| 3659056
 | &nbsp;
-| style='text-align:right'| 1371
+| style='text-align:right'| 697
-| style='text-align:right'| 204354268
+| style='text-align:right'| 196198368
-| 179,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2&position=KB463958:131929-132287 KB463958:131929-132287]
+| 572,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1&position=2446670:645-1789 2446670:645-1789]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBip2 plot droBip2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna1 plot droAna1]
 |-
-| 105
+| 118
-| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224195.2/ GCA_000224195.2]
-| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 34862
-| style='text-align:right'| 41
-| style='text-align:right'| 2092385
-| &nbsp;
-| style='text-align:right'| 2187
-| style='text-align:right'| 135919965
-| 270,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2&position=KB458613:1953986-1954526 KB458613:1953986-1954526]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEle2 plot droEle2]
-|-
-| 106
 | 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1 droEre1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2 droAna2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 96336
+| style='text-align:right'| 248263
-| style='text-align:right'| 44
+| style='text-align:right'| 42
-| style='text-align:right'| 5585722
+| style='text-align:right'| 14624595
 | &nbsp;
-| style='text-align:right'| 674
+| style='text-align:right'| 918
-| style='text-align:right'| 191777516
+| style='text-align:right'| 748771139
-| 359,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1&position=scaffold_1301:371-1089 scaffold_1301:371-1089]
+| 572,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2&position=scaffold_13499:1095908-1097052 scaffold_13499:1095908-1097052]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre1 plot droEre1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna2 plot droAna2]
 |-
-| 107
+| 119
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005135.1/ GCF_000005135.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005115.1/ GCF_000005115.1]
 | tbd
-| style='text-align:right'| 95081
+| style='text-align:right'| 246334
-| style='text-align:right'| 44
+| style='text-align:right'| 42
-| style='text-align:right'| 5535640
+| style='text-align:right'| 14515690
 | &nbsp;
-| style='text-align:right'| 676
+| style='text-align:right'| 927
-| style='text-align:right'| 190524603
+| style='text-align:right'| 745835855
-| 359,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2&position=scaffold_1301:371-1089 scaffold_1301:371-1089]
+| 572,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3&position=scaffold_13499:1092668-1093812 scaffold_13499:1092668-1093812]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre2 plot droEre2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna3 plot droAna3]
 |-
-| 108
+| 120
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236325.2/ GCA_000236325.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000233415.2/ GCA_000233415.2]
 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 59111
+| style='text-align:right'| 46906
-| style='text-align:right'| 40
+| style='text-align:right'| 42
-| style='text-align:right'| 3495099
+| style='text-align:right'| 2807408
 | &nbsp;
-| style='text-align:right'| 1518
+| style='text-align:right'| 2591
-| style='text-align:right'| 181127987
+| style='text-align:right'| 175612579
-| 141,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2&position=KB464979:6084-6366 KB464979:6084-6366]
+| 2241,	3,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2&position=AFFD02006372:54233-58717 AFFD02006372:54233-58717]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEug2 plot droEug2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBia2 plot droBia2]
 |-
-| 109
+| 121
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000220665.2/ GCA_000220665.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236285.2/ GCA_000236285.2]
-| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
+| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0
-| style='text-align:right'| 21964
+| style='text-align:right'| 54693
-| style='text-align:right'| 44
+| style='text-align:right'| 39
-| style='text-align:right'| 1418464
+| style='text-align:right'| 2946335
 | &nbsp;
-| style='text-align:right'| 2380.5
+| style='text-align:right'| 1371
-| style='text-align:right'| 83742114
+| style='text-align:right'| 204354268
-| 190,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2&position=AFFG02001364:4041-4421 AFFG02001364:4041-4421]
+| 179,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2&position=KB463958:131929-132287 KB463958:131929-132287]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droFic2 plot droFic2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBip2 plot droBip2]
 |-
-| 110
+| 122
-| 2005
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1 droGri1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224195.2/ GCA_000224195.2]
+| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
+| style='text-align:right'| 34862
+| style='text-align:right'| 41
+| style='text-align:right'| 2092385
+| &nbsp;
+| style='text-align:right'| 2187
+| style='text-align:right'| 135919965
+| 270,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2&position=KB458613:1953986-1954526 KB458613:1953986-1954526]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEle2 plot droEle2]
+|-
+| 123
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1 droEre1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 458551
+| style='text-align:right'| 96336
-| style='text-align:right'| 40
+| style='text-align:right'| 44
-| style='text-align:right'| 21432909
+| style='text-align:right'| 5585722
 | &nbsp;
-| style='text-align:right'| 509
+| style='text-align:right'| 674
-| style='text-align:right'| 538034457
+| style='text-align:right'| 191777516
-| 491,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1&position=scaffold_2211:899-1881 scaffold_2211:899-1881]
+| 359,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1&position=scaffold_1301:371-1089 scaffold_1301:371-1089]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri1 plot droGri1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre1 plot droEre1]
 |-
-| 111
+| 124
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005155.2/ GCF_000005155.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005135.1/ GCF_000005135.1]
 | tbd
-| style='text-align:right'| 302510
+| style='text-align:right'| 95081
-| style='text-align:right'| 40
+| style='text-align:right'| 44
-| style='text-align:right'| 14467041
+| style='text-align:right'| 5535640
 | &nbsp;
-| style='text-align:right'| 522
+| style='text-align:right'| 676
-| style='text-align:right'| 418546843
+| style='text-align:right'| 190524603
-| 188,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2&position=scaffold_6592:1167-1543 scaffold_6592:1167-1543]
+| 359,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2&position=scaffold_1301:371-1089 scaffold_1301:371-1089]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri2 plot droGri2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre2 plot droEre2]
 |-
-| 112
+| 125
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224215.2/ GCA_000224215.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236325.2/ GCA_000236325.2]
 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 31358
+| style='text-align:right'| 59111
-| style='text-align:right'| 41
+| style='text-align:right'| 40
-| style='text-align:right'| 1855833
+| style='text-align:right'| 3495099
 | &nbsp;
-| style='text-align:right'| 1533.5
+| style='text-align:right'| 1518
-| style='text-align:right'| 112074726
+| style='text-align:right'| 181127987
-| 117,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2&position=KB459586:778466-778700 KB459586:778466-778700]
+| 141,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2&position=KB464979:6084-6366 KB464979:6084-6366]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droKik2 plot droKik2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEug2 plot droEug2]
 |-
-| 113
+| 126
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000269505.2/ GCA_000269505.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000220665.2/ GCA_000220665.2]
-| Newbler v. 2.6
+| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 18368
+| style='text-align:right'| 21964
-| style='text-align:right'| 45
+| style='text-align:right'| 44
-| style='text-align:right'| 1204033
+| style='text-align:right'| 1418464
 | &nbsp;
-| style='text-align:right'| 1747
+| style='text-align:right'| 2380.5
-| style='text-align:right'| 75101816
+| style='text-align:right'| 83742114
-| 140,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2&position=chr2:3040735-3041015 chr2:3040735-3041015]
+| 190,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2&position=AFFG02001364:4041-4421 AFFG02001364:4041-4421]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMir2 plot droMir2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droFic2 plot droFic2]
 |-
-| 114
+| 127
-| 2004
+| 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1 droMoj1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1 droGri1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 69928
+| style='text-align:right'| 458551
-| style='text-align:right'| 38
+| style='text-align:right'| 40
-| style='text-align:right'| 3220037
+| style='text-align:right'| 21432909
 | &nbsp;
-| style='text-align:right'| 310
+| style='text-align:right'| 509
-| style='text-align:right'| 78711524
+| style='text-align:right'| 538034457
-| 225,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1&position=contig_34282:247-697 contig_34282:247-697]
+| 491,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1&position=scaffold_2211:899-1881 scaffold_2211:899-1881]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj1 plot droMoj1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri1 plot droGri1]
 |-
-| 115
+| 128
-| 2005
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2 droMoj2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005155.2/ GCF_000005155.2]
 | tbd
-| style='text-align:right'| 102140
+| style='text-align:right'| 302510
-| style='text-align:right'| 41
+| style='text-align:right'| 40
-| style='text-align:right'| 5658627
+| style='text-align:right'| 14467041
 | &nbsp;
-| style='text-align:right'| 1086
+| style='text-align:right'| 522
-| style='text-align:right'| 363630258
+| style='text-align:right'| 418546843
-| 202,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2&position=scaffold_6540:14391223-14391627 scaffold_6540:14391223-14391627]
+| 188,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2&position=scaffold_6592:1167-1543 scaffold_6592:1167-1543]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj2 plot droMoj2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri2 plot droGri2]
 |-
-| 116
+| 129
-| 2006
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005175.2/ GCF_000005175.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224215.2/ GCA_000224215.2]
-| tbd
+| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 101230
+| style='text-align:right'| 31358
 | style='text-align:right'| 41
-| style='text-align:right'| 5606832
+| style='text-align:right'| 1855833
 | &nbsp;
-| style='text-align:right'| 1114
+| style='text-align:right'| 1533.5
-| style='text-align:right'| 361818537
+| style='text-align:right'| 112074726
-| 202,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3&position=scaffold_6540:14384339-14384743 scaffold_6540:14384339-14384743]
+| 117,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2&position=KB459586:778466-778700 KB459586:778466-778700]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj3 plot droMoj3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droKik2 plot droKik2]
 |-
-| 117
+| 130
-| 2005
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005195.2/ GCF_000005195.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000269505.2/ GCA_000269505.2]
-| tbd
+| Newbler v. 2.6
-| style='text-align:right'| 75046
+| style='text-align:right'| 18368
 | style='text-align:right'| 45
-| style='text-align:right'| 5536401
+| style='text-align:right'| 1204033
 | &nbsp;
-| style='text-align:right'| 2595
+| style='text-align:right'| 1747
-| style='text-align:right'| 325634621
+| style='text-align:right'| 75101816
-| 580,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1&position=super_62:246420-247581 super_62:246420-247581]
+| 140,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2&position=chr2:3040735-3041015 chr2:3040735-3041015]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPer1 plot droPer1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMir2 plot droMir2]
 |-
-| 118
+| 131
-| 2013
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1 droMoj1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001765.3/ GCF_000001765.3]
+| style='text-align:center;'| tbd
-| PBJelly v. 12.8.2; Atlas genome assembly
+| tbd
-| style='text-align:right'| 53481
+| style='text-align:right'| 69928
-| style='text-align:right'| 45
+| style='text-align:right'| 38
-| style='text-align:right'| 3494617
+| style='text-align:right'| 3220037
 | &nbsp;
-| style='text-align:right'| 2480
+| style='text-align:right'| 310
-| style='text-align:right'| 231367590
+| style='text-align:right'| 78711524
-| 312,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3&position=chrUn_CH674897_1:32411-33035 chrUn_CH674897_1:32411-33035]
+| 225,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1&position=contig_34282:247-697 contig_34282:247-697]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPse3 plot droPse3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj1 plot droMoj1]
 |-
-| 119
+| 132
-| 2013
+| 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2 droMoj2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236305.2/ GCA_000236305.2]
+| style='text-align:center;'| tbd
-| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
+| tbd
-| style='text-align:right'| 68118
+| style='text-align:right'| 102140
 | style='text-align:right'| 41
-| style='text-align:right'| 4002283
+| style='text-align:right'| 5658627
 | &nbsp;
-| style='text-align:right'| 1672
+| style='text-align:right'| 1086
-| style='text-align:right'| 235074913
+| style='text-align:right'| 363630258
-| 205,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2&position=AFPP02028413:1419-1829 AFPP02028413:1419-1829]
+| 202,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2&position=scaffold_6540:14391223-14391627 scaffold_6540:14391223-14391627]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droRho2 plot droRho2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj2 plot droMoj2]
 |-
-| 120
+| 133
-| 2005
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005215.1/ GCA_000005215.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005175.2/ GCF_000005175.2]
 | tbd
-| style='text-align:right'| 127886
+| style='text-align:right'| 101230
-| style='text-align:right'| 38
+| style='text-align:right'| 41
-| style='text-align:right'| 6652375
+| style='text-align:right'| 5606832
 | &nbsp;
-| style='text-align:right'| 465
+| style='text-align:right'| 1114
-| style='text-align:right'| 177925676
+| style='text-align:right'| 361818537
-| 360,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1&position=super_6483:1086-1806 super_6483:1086-1806]
+| 202,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3&position=scaffold_6540:14384339-14384743 scaffold_6540:14384339-14384743]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSec1 plot droSec1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj3 plot droMoj3]
 |-
-| 121
+| 134
 | 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1 droSim1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005195.2/ GCF_000005195.2]
 | tbd
-| style='text-align:right'| 47915
+| style='text-align:right'| 75046
-| style='text-align:right'| 42
+| style='text-align:right'| 45
-| style='text-align:right'| 2874159
+| style='text-align:right'| 5536401
 | &nbsp;
-| style='text-align:right'| 1400
+| style='text-align:right'| 2595
-| style='text-align:right'| 171101666
+| style='text-align:right'| 325634621
-| 217,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1&position=chr3R_random:168062-168496 chr3R_random:168062-168496]
+| 580,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1&position=super_62:246420-247581 super_62:246420-247581]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim1 plot droSim1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPer1 plot droPer1]
 |-
-| 122
+| 135
-| 2014
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000754195.2/ GCF_000754195.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000001765.3/ GCF_000001765.3]
-| Velvet v. 1.1.04
+| PBJelly v. 12.8.2; Atlas genome assembly
-| style='text-align:right'| 10385
+| style='text-align:right'| 53481
-| style='text-align:right'| 40
+| style='text-align:right'| 45
-| style='text-align:right'| 551061
+| style='text-align:right'| 3494617
 | &nbsp;
-| style='text-align:right'| 466
+| style='text-align:right'| 2480
-| style='text-align:right'| 26120972
+| style='text-align:right'| 231367590
-| 217,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2&position=chrUn_NW_015496898v1:4674-5108 chrUn_NW_015496898v1:4674-5108]
+| 312,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3&position=chrUn_CH674897_1:32411-33035 chrUn_CH674897_1:32411-33035]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim2 plot droSim2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPse3 plot droPse3]
 |-
-| 123
+| 136
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000472105.1/ GCA_000472105.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000236305.2/ GCA_000236305.2]
-| SOAPdenovo v. 2
-| style='text-align:right'| 117859
-| style='text-align:right'| 46
-| style='text-align:right'| 12342639
-| &nbsp;
-| style='text-align:right'| 2277
-| style='text-align:right'| 517597655
-| 4939,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1&position=KI419149:2637663-2647541 KI419149:2637663-2647541]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSuz1 plot droSuz1]
-|-
-| 124
-| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224235.2/ GCA_000224235.2]
 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 48870
+| style='text-align:right'| 68118
 | style='text-align:right'| 41
-| style='text-align:right'| 2816693
+| style='text-align:right'| 4002283
 | &nbsp;
-| style='text-align:right'| 2013
+| style='text-align:right'| 1672
-| style='text-align:right'| 202395837
+| style='text-align:right'| 235074913
-| 306,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2&position=AFFI02002878:4290-4902 AFFI02002878:4290-4902]
+| 205,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2&position=AFPP02028413:1419-1829 AFPP02028413:1419-1829]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droTak2 plot droTak2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droRho2 plot droRho2]
 |-
-| 125
+| 137
-| 2004
+| 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1 droVir1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000005215.1/ GCA_000005215.1]
 | tbd
-| style='text-align:right'| 147648
+| style='text-align:right'| 127886
-| style='text-align:right'| 35
+| style='text-align:right'| 38
-| style='text-align:right'| 6630839
+| style='text-align:right'| 6652375
 | &nbsp;
-| style='text-align:right'| 429
+| style='text-align:right'| 465
-| style='text-align:right'| 239695710
+| style='text-align:right'| 177925676
-| 244,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1&position=scaffold_0:5707381-5707869 scaffold_0:5707381-5707869]
+| 360,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1&position=super_6483:1086-1806 super_6483:1086-1806]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir1 plot droVir1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSec1 plot droSec1]
 |-
-| 126
+| 138
 | 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2 droVir2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1 droSim1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 432783
+| style='text-align:right'| 47915
-| style='text-align:right'| 30
+| style='text-align:right'| 42
-| style='text-align:right'| 17539885
+| style='text-align:right'| 2874159
 | &nbsp;
-| style='text-align:right'| 481
+| style='text-align:right'| 1400
-| style='text-align:right'| 757905036
+| style='text-align:right'| 171101666
-| 244,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2&position=scaffold_13049:18877549-18878037 scaffold_13049:18877549-18878037]
+| 217,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1&position=chr3R_random:168062-168496 chr3R_random:168062-168496]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir2 plot droVir2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim1 plot droSim1]
 |-
-| 127
+| 139
-| 2006
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005245.1/ GCF_000005245.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000754195.2/ GCF_000754195.2]
-| tbd
+| Velvet v. 1.1.04
-| style='text-align:right'| 407188
+| style='text-align:right'| 10385
-| style='text-align:right'| 30
+| style='text-align:right'| 40
-| style='text-align:right'| 16757243
+| style='text-align:right'| 551061
 | &nbsp;
-| style='text-align:right'| 495
+| style='text-align:right'| 466
-| style='text-align:right'| 747769004
+| style='text-align:right'| 26120972
-| 244,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3&position=scaffold_13049:18848863-18849351 scaffold_13049:18848863-18849351]
+| 217,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2&position=chrUn_NW_015496898v1:4674-5108 chrUn_NW_015496898v1:4674-5108]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir3 plot droVir3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim2 plot droSim2]
 |-
-| 128
+| 140
-| 2006
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1 droWil1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000472105.1/ GCA_000472105.1]
-| tbd
+| SOAPdenovo v. 2
-| style='text-align:right'| 118355
+| style='text-align:right'| 117859
-| style='text-align:right'| 42
+| style='text-align:right'| 46
-| style='text-align:right'| 7234894
+| style='text-align:right'| 12342639
 | &nbsp;
-| style='text-align:right'| 1695
+| style='text-align:right'| 2277
-| style='text-align:right'| 472632964
+| style='text-align:right'| 517597655
-| 954,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1&position=scaffold_181130:9135849-9137757 scaffold_181130:9135849-9137757]
+| 4939,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1&position=KI419149:2637663-2647541 KI419149:2637663-2647541]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil1 plot droWil1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSuz1 plot droSuz1]
 |-
-| 129
+| 141
-| 2006
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000224235.2/ GCA_000224235.2]
-| tbd
+| Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
-| style='text-align:right'| 118240
+| style='text-align:right'| 48870
-| style='text-align:right'| 42
+| style='text-align:right'| 41
-| style='text-align:right'| 7228999
+| style='text-align:right'| 2816693
 | &nbsp;
-| style='text-align:right'| 1695
+| style='text-align:right'| 2013
-| style='text-align:right'| 472142234
+| style='text-align:right'| 202395837
-| 954,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2&position=CH964272:9135849-9137757 CH964272:9135849-9137757]
+| 306,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2&position=AFFI02002878:4290-4902 AFFI02002878:4290-4902]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil2 plot droWil2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droTak2 plot droTak2]
 |-
-| 130
+| 142
 | 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1 droVir1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 81563
+| style='text-align:right'| 147648
-| style='text-align:right'| 43
+| style='text-align:right'| 35
-| style='text-align:right'| 6228480
+| style='text-align:right'| 6630839
 | &nbsp;
-| style='text-align:right'| 3752
+| style='text-align:right'| 429
-| style='text-align:right'| 459910434
+| style='text-align:right'| 239695710
-| 851,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1&position=chr3L:24830341-24832043 chr3L:24830341-24832043]
+| 244,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1&position=scaffold_0:5707381-5707869 scaffold_0:5707381-5707869]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak1 plot droYak1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir1 plot droVir1]
 |-
-| 131
+| 143
 | 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2 droYak2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2 droVir2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 93441
+| style='text-align:right'| 432783
-| style='text-align:right'| 45
+| style='text-align:right'| 30
-| style='text-align:right'| 6941572
+| style='text-align:right'| 17539885
 | &nbsp;
-| style='text-align:right'| 3518
+| style='text-align:right'| 481
-| style='text-align:right'| 501527798
+| style='text-align:right'| 757905036
-| 1122,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2&position=chrU:731511-733756 chrU:731511-733756]
+| 244,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2&position=scaffold_13049:18877549-18878037 scaffold_13049:18877549-18878037]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak2 plot droYak2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir2 plot droVir2]
 |-
-| 132
+| 144
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005975.2/ GCF_000005975.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005245.1/ GCF_000005245.1]
 | tbd
-| style='text-align:right'| 85136
+| style='text-align:right'| 407188
-| style='text-align:right'| 46
+| style='text-align:right'| 30
-| style='text-align:right'| 6497582
+| style='text-align:right'| 16757243
 | &nbsp;
-| style='text-align:right'| 2641
+| style='text-align:right'| 495
-| style='text-align:right'| 404384429
+| style='text-align:right'| 747769004
-| 1122,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3&position=chrUn_CH892674_1:731511-733756 chrUn_CH892674_1:731511-733756]
+| 244,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3&position=scaffold_13049:18848863-18849351 scaffold_13049:18848863-18849351]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak3 plot droYak3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir3 plot droVir3]
 |-
-| 135
+| 145
-| 2014
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1 droWil1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000721915.1/ GCA_000721915.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1]
-| AllPaths v. 43500
+| tbd
-| style='text-align:right'| 309026
+| style='text-align:right'| 118355
-| style='text-align:right'| 36
+| style='text-align:right'| 42
-| style='text-align:right'| 12717997
+| style='text-align:right'| 7234894
 | &nbsp;
-| style='text-align:right'| 109
+| style='text-align:right'| 1695
-| style='text-align:right'| 633934424
+| style='text-align:right'| 472632964
-| 1803,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1&position=KL593524:286555-290161 KL593524:286555-290161]
+| 954,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1&position=scaffold_181130:9135849-9137757 scaffold_181130:9135849-9137757]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=esoLuc1 plot esoLuc1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil1 plot droWil1]
 |-
-| 136
+| 146
-| 2014
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690775.1/ GCF_000690775.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005925.1/ GCF_000005925.1]
-| SOAPdenovo v. 1.6
+| tbd
-| style='text-align:right'| 48033
+| style='text-align:right'| 118240
-| style='text-align:right'| 41
+| style='text-align:right'| 42
-| style='text-align:right'| 2646849
+| style='text-align:right'| 7228999
 | &nbsp;
-| style='text-align:right'| 3690
+| style='text-align:right'| 1695
-| style='text-align:right'| 271468700
+| style='text-align:right'| 472142234
-| 462,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1&position=KK561721:27808-28732 KK561721:27808-28732]
+| 954,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2&position=CH964272:9135849-9137757 CH964272:9135849-9137757]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eurHel1 plot eurHel1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil2 plot droWil2]
 |-
-| 137
+| 147
-| 2002
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 65564
+| style='text-align:right'| 81563
-| style='text-align:right'| 35
+| style='text-align:right'| 43
-| style='text-align:right'| 3413218
+| style='text-align:right'| 6228480
 | &nbsp;
-| style='text-align:right'| 165
+| style='text-align:right'| 3752
-| style='text-align:right'| 124234021
+| style='text-align:right'| 459910434
-| 304,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1&position=chrUn:169005183-169005791 chrUn:169005183-169005791]
+| 851,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1&position=chr3L:24830341-24832043 chr3L:24830341-24832043]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr1 plot fr1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak1 plot droYak1]
 |-
-| 138
+| 148
-| 2004
+| 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2 droYak2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 104956
+| style='text-align:right'| 93441
-| style='text-align:right'| 35
+| style='text-align:right'| 45
-| style='text-align:right'| 5519798
+| style='text-align:right'| 6941572
 | &nbsp;
-| style='text-align:right'| 156
+| style='text-align:right'| 3518
-| style='text-align:right'| 261084207
+| style='text-align:right'| 501527798
-| 151,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2&position=chrUn:356162839-356163141 chrUn:356162839-356163141]
+| 1122,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2&position=chrU:731511-733756 chrU:731511-733756]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr2 plot fr2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak2 plot droYak2]
 |-
-| 139
+| 149
-| 2011
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000180615.1/ GCF_000180615.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000005975.2/ GCF_000005975.2]
 | tbd
-| style='text-align:right'| 105765
+| style='text-align:right'| 85136
-| style='text-align:right'| 35
+| style='text-align:right'| 46
-| style='text-align:right'| 5702900
+| style='text-align:right'| 6497582
 | &nbsp;
-| style='text-align:right'| 157
+| style='text-align:right'| 2641
-| style='text-align:right'| 257018230
+| style='text-align:right'| 404384429
-| 151,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3&position=HE592488:202-504 HE592488:202-504]
+| 1122,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3&position=chrUn_CH892674_1:731511-733756 chrUn_CH892674_1:731511-733756]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr3 plot fr3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak3 plot droYak3]
 |-
-| 140
+| 152
-| 2010
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1 egrGar1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000231765.1/ GCA_000231765.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687185.1/ GCF_000687185.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 523023
+| style='text-align:right'| 74371
-| style='text-align:right'| 30
+| style='text-align:right'| 43
-| style='text-align:right'| 17042881
+| style='text-align:right'| 9954381
 | &nbsp;
-| style='text-align:right'| 24
+| style='text-align:right'| 893
-| style='text-align:right'| 573821154
+| style='text-align:right'| 271113520
-| 131,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1&position=HE571852:62524-62786 HE571852:62524-62786]
+| 2791,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1&position=KK500861:718810-724392 KK500861:718810-724392]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gadMor1 plot gadMor1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=egrGar1 plot egrGar1]
 |-
-| 141
+| 153
-| 2004
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000721915.1/ GCA_000721915.1]
-| tbd
+| AllPaths v. 43500
-| style='text-align:right'| 157813
+| style='text-align:right'| 309026
-| style='text-align:right'| 51
+| style='text-align:right'| 36
-| style='text-align:right'| 15224008
+| style='text-align:right'| 12717997
 | &nbsp;
-| style='text-align:right'| 3723
+| style='text-align:right'| 109
-| style='text-align:right'| 846924205
+| style='text-align:right'| 633934424
-| 208,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2&position=chr2:94743278-94743694 chr2:94743278-94743694]
+| 1803,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1&position=KL593524:286555-290161 KL593524:286555-290161]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal2 plot galGal2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=esoLuc1 plot esoLuc1]
 |-
-| 142
+| 154
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13 euaGli13]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 243371
+| style='text-align:right'| 85054
-| style='text-align:right'| 62
+| style='text-align:right'| 35
-| style='text-align:right'| 25066425
+| style='text-align:right'| 3561209
 | &nbsp;
-| style='text-align:right'| 3004
+| style='text-align:right'| 981
-| style='text-align:right'| 1138149811
+| style='text-align:right'| 360128068
-| 208,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3&position=chr2:97262115-97262531 chr2:97262115-97262531]
+| 95,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13&position=4-7:24024058-24024248 4-7:24024058-24024248]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal3 plot galGal3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=euaGli13 plot euaGli13]
 |-
-| 143
+| 155
-| 2011
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.3/ GCF_000002315.3]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690775.1/ GCF_000690775.1]
-| Celera Assembler v. 5.4
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 78961
+| style='text-align:right'| 48033
-| style='text-align:right'| 39
+| style='text-align:right'| 41
-| style='text-align:right'| 4732239
+| style='text-align:right'| 2646849
 | &nbsp;
-| style='text-align:right'| 2968
+| style='text-align:right'| 3690
-| style='text-align:right'| 493569103
+| style='text-align:right'| 271468700
-| 17591,	16,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4&position=chrZ:21320544-21355741 chrZ:21320544-21355741]
+| 462,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1&position=KK561721:27808-28732 KK561721:27808-28732]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal4 plot galGal4]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eurHel1 plot eurHel1]
 |-
-| 144
+| 156
 | 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13 eutHer13]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 131262
+| style='text-align:right'| 75114
-| style='text-align:right'| 39
+| style='text-align:right'| 37
-| style='text-align:right'| 7836949
+| style='text-align:right'| 3312319
 | &nbsp;
-| style='text-align:right'| 3635
+| style='text-align:right'| 1220
-| style='text-align:right'| 770629287
+| style='text-align:right'| 345926827
-| 296,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1&position=chrUn:59780312-59780904 chrUn:59780312-59780904]
+| 125,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13&position=5-6:21163986-21164236 5-6:21163986-21164236]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAcu1 plot gasAcu1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eutHer13 plot eutHer13]
 |-
-| 145
+| 157
-| 1880
+| 2013
-| style='text-align:center;'| gasAsc0
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180675.1/ GCA_000180675.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337975.1/ GCF_000337975.1]
-| tbd
+| SOAPdenovo v. 1.4
-| style='text-align:right'| 116031
+| style='text-align:right'| 33448
-| style='text-align:right'| 39
+| style='text-align:right'| 36
-| style='text-align:right'| 6613325
+| style='text-align:right'| 3028131
 | &nbsp;
-| style='text-align:right'| 1417
+| style='text-align:right'| 144
-| style='text-align:right'| 518945407
+| style='text-align:right'| 71160661
-| 316,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAsc0&position=contig_16726:674-1306 contig_16726:674-1306]
+| 1589,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1&position=KB397979:787306-790484 KB397979:787306-790484]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAsc0 plot gasAsc0]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falChe1 plot falChe1]
 |-
-| 146
+| 158
-| 2014
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690875.1/ GCF_000690875.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000337955.1/ GCF_000337955.1]
-| SOAPdenovo v. 1.6
+| SOAPdenovo v. 1.4
-| style='text-align:right'| 24295
+| style='text-align:right'| 32904
-| style='text-align:right'| 36
+| style='text-align:right'| 38
-| style='text-align:right'| 1352476
+| style='text-align:right'| 2747346
 | &nbsp;
-| style='text-align:right'| 75
+| style='text-align:right'| 156
-| style='text-align:right'| 47417993
+| style='text-align:right'| 69981752
-| 302,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1&position=KK611813:2739-3343 KK611813:2739-3343]
+| 1888,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1&position=KB390863:6987566-6991342 KB390863:6987566-6991342]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavSte1 plot gavSte1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falPer1 plot falPer1]
 |-
-| 147
+| 159
-| 2012
+| 2002
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000277835.1/ GCF_000277835.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 2.01
+| tbd
-| style='text-align:right'| 113187
+| style='text-align:right'| 65564
-| style='text-align:right'| 37
+| style='text-align:right'| 35
-| style='text-align:right'| 6785044
+| style='text-align:right'| 3413218
 | &nbsp;
-| style='text-align:right'| 204
+| style='text-align:right'| 165
-| style='text-align:right'| 268468600
+| style='text-align:right'| 124234021
-| 1013,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1&position=JH739970:2776008-2778034 JH739970:2776008-2778034]
+| 304,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1&position=chrUn:169005183-169005791 chrUn:169005183-169005791]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=geoFor1 plot geoFor1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr1 plot fr1]
 |-
-| 148
+| 160
-| 2006
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13 gliRes13]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 31976
+| style='text-align:right'| 104956
-| style='text-align:right'| 36
+| style='text-align:right'| 35
-| style='text-align:right'| 1385928
+| style='text-align:right'| 5519798
 | &nbsp;
-| style='text-align:right'| 1661
+| style='text-align:right'| 156
-| style='text-align:right'| 143989628
+| style='text-align:right'| 261084207
-| 95,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13&position=4-7:15697982-15698172 4-7:15697982-15698172]
+| 151,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2&position=chrUn:356162839-356163141 chrUn:356162839-356163141]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gliRes13 plot gliRes13]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr2 plot fr2]
 |-
-| 149
+| 161
-| 2016
+| 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000180615.1/ GCF_000180615.1]
 | tbd
-| style='text-align:right'| 3555119
+| style='text-align:right'| 105765
-| style='text-align:right'| 33
+| style='text-align:right'| 35
-| style='text-align:right'| 133654191
+| style='text-align:right'| 5702900
 | &nbsp;
-| style='text-align:right'| 4102
+| style='text-align:right'| 157
-| style='text-align:right'| 21270991545
+| style='text-align:right'| 257018230
-| 338,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5&position=CYUI01005848v1:13590-14266 CYUI01005848v1:13590-14266]
+| 151,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3&position=HE592488:202-504 HE592488:202-504]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor5 plot gorGor5]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr3 plot fr3]
 |-
-| 150
+| 162
-| 2009
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690835.1/ GCF_000690835.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 109810
+| style='text-align:right'| 20338
-| style='text-align:right'| 42
+| style='text-align:right'| 37
-| style='text-align:right'| 5802860
+| style='text-align:right'| 1197675
+| &nbsp;
+| style='text-align:right'| 93
+| style='text-align:right'| 36399474
+| 576,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1&position=KK595554:8470-9622 KK595554:8470-9622]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fulGla1 plot fulGla1]
+|-
+| 163
+| 2010
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000231765.1/ GCA_000231765.1]
+| tbd
+| style='text-align:right'| 523023
+| style='text-align:right'| 30
+| style='text-align:right'| 17042881
 | &nbsp;
-| style='text-align:right'| 1251.5
+| style='text-align:right'| 24
-| style='text-align:right'| 319005845
+| style='text-align:right'| 573821154
-| 196,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1&position=Hcon_Contig0025586:3955-4347 Hcon_Contig0025586:3955-4347]
+| 131,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1&position=HE571852:62524-62786 HE571852:62524-62786]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon1 plot haeCon1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gadMor1 plot gadMor1]
 |-
-| 151
+| 164
-| 2013
+| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 53818
+| style='text-align:right'| 157813
-| style='text-align:right'| 43
+| style='text-align:right'| 51
-| style='text-align:right'| 3892613
+| style='text-align:right'| 15224008
 | &nbsp;
-| style='text-align:right'| 570
+| style='text-align:right'| 3723
-| style='text-align:right'| 187299643
+| style='text-align:right'| 846924205
-| 2147,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2&position=scaffold_1557:10532-14826 scaffold_1557:10532-14826]
+| 208,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2&position=chr2:94743278-94743694 chr2:94743278-94743694]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon2 plot haeCon2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal2 plot galGal2]
 |-
-| 152
+| 165
-| 2014
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691405.1/ GCF_000691405.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.6
+| tbd
-| style='text-align:right'| 13685
+| style='text-align:right'| 243371
-| style='text-align:right'| 36
+| style='text-align:right'| 62
-| style='text-align:right'| 754065
+| style='text-align:right'| 25066425
 | &nbsp;
-| style='text-align:right'| 301
+| style='text-align:right'| 3004
-| style='text-align:right'| 41720730
+| style='text-align:right'| 1138149811
-| 548,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1&position=KK653364:30569-31666 KK653364:30569-31666]
+| 208,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3&position=chr2:97262115-97262531 chr2:97262115-97262531]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halAlb1 plot halAlb1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal3 plot galGal3]
 |-
-| 153
+| 166
-| 2014
+| 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000737465.1/ GCF_000737465.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.3/ GCF_000002315.3]
-| SOAPdenovo2 v. May 2014
+| Celera Assembler v. 5.4
-| style='text-align:right'| 16099
+| style='text-align:right'| 78961
-| style='text-align:right'| 40
+| style='text-align:right'| 39
-| style='text-align:right'| 1241068
+| style='text-align:right'| 4732239
 | &nbsp;
-| style='text-align:right'| 4586
+| style='text-align:right'| 2968
-| style='text-align:right'| 98353830
+| style='text-align:right'| 493569103
-| 79,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1&position=KL869431:1084034-1084192 KL869431:1084034-1084192]
+| 17591,	16,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4&position=chrZ:21320544-21355741 chrZ:21320544-21355741]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halLeu1 plot halLeu1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal4 plot galGal4]
 |-
-| 154
+| 167
-| 2011
+| 2015
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239415.1/ GCF_000239415.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.4/ GCF_000002315.4]
-| ALLPATHS-LG v. R35951
+| MHAP/PBcR v. 8.2beta
-| style='text-align:right'| 34584
+| style='text-align:right'| 985564
-| style='text-align:right'| 37
+| style='text-align:right'| 36
-| style='text-align:right'| 2342045
+| style='text-align:right'| 47990278
 | &nbsp;
-| style='text-align:right'| 3524.5
+| style='text-align:right'| 1925
-| style='text-align:right'| 202958431
+| style='text-align:right'| 3490824745
-| 10390,	20,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1&position=JH425331:1373378-1394177 JH425331:1373378-1394177]
+| 17591,	16,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5&position=chrZ:21461674-21496871 chrZ:21461674-21496871]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hapBur1 plot hapBur1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal5 plot galGal5]
 |-
-| 155
+| 168
-| 2011
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000223415.1/ GCA_000223415.1]
+| style='text-align:center;'| tbd
-| Celera assembler v. 6.0
+| tbd
-| style='text-align:right'| 3302
+| style='text-align:right'| 131262
-| style='text-align:right'| 51
+| style='text-align:right'| 39
-| style='text-align:right'| 353946
+| style='text-align:right'| 7836949
 | &nbsp;
-| style='text-align:right'| 673
+| style='text-align:right'| 3635
-| style='text-align:right'| 12041725
+| style='text-align:right'| 770629287
-| 317,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1&position=GL996135v1:102345-102979 GL996135v1:102345-102979]
+| 296,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1&position=chrUn:59780312-59780904 chrUn:59780312-59780904]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetBac1 plot hetBac1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAcu1 plot gasAcu1]
 |-
-| 156
+| 169
 | 1880
-| style='text-align:center;'| homNea0
+| style='text-align:center;'| gasAsc0
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180675.1/ GCA_000180675.1]
 | tbd
-| style='text-align:right'| 148
+| style='text-align:right'| 116031
-| style='text-align:right'| 30
+| style='text-align:right'| 39
-| style='text-align:right'| 4725
+| style='text-align:right'| 6613325
 | &nbsp;
-| style='text-align:right'| 14.5
+| style='text-align:right'| 1417
-| style='text-align:right'| 2669
+| style='text-align:right'| 518945407
-| 37,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homNea0&position=151586_3339_2553:20-94 151586_3339_2553:20-94]
+| 316,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAsc0&position=contig_16726:674-1306 contig_16726:674-1306]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homNea0 plot homNea0]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAsc0 plot gasAsc0]
 |-
-| 158
+| 170
-| 2011
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000242695.1/ GCF_000242695.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690875.1/ GCF_000690875.1]
-| AllPaths v. R38293
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 77276
+| style='text-align:right'| 24295
-| style='text-align:right'| 37
+| style='text-align:right'| 36
-| style='text-align:right'| 4579890
+| style='text-align:right'| 1352476
 | &nbsp;
-| style='text-align:right'| 1084
+| style='text-align:right'| 75
-| style='text-align:right'| 350156295
+| style='text-align:right'| 47417993
-| 488,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1&position=chrLG5:14840992-14841969 chrLG5:14840992-14841969]
+| 302,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1&position=KK611813:2739-3343 KK611813:2739-3343]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepOcu1 plot lepOcu1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavSte1 plot gavSte1]
 |-
-| 159
+| 171
-| 2013
+| 2012
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000466285.1/ GCA_000466285.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000277835.1/ GCF_000277835.1]
-| Newbler v. 2.7
+| SOAPdenovo v. 2.01
-| style='text-align:right'| 768187
+| style='text-align:right'| 113187
-| style='text-align:right'| 35
+| style='text-align:right'| 37
-| style='text-align:right'| 32420899
+| style='text-align:right'| 6785044
 | &nbsp;
-| style='text-align:right'| 153
+| style='text-align:right'| 204
-| style='text-align:right'| 1525909318
+| style='text-align:right'| 268468600
-| 207,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1&position=KE997215:997-1411 KE997215:997-1411]
+| 1013,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1&position=JH739970:2776008-2778034 JH739970:2776008-2778034]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=letCam1 plot letCam1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=geoFor1 plot geoFor1]
 |-
-| 160
+| 172
-| 1880
+| 2006
-| style='text-align:center;'| linHum0
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13 gliRes13]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000217595.1/ GCF_000217595.1]
+| style='text-align:center;'| tbd
-| CABOG v. 5.3
+| tbd
-| style='text-align:right'| 42080
+| style='text-align:right'| 31976
-| style='text-align:right'| 41
+| style='text-align:right'| 36
-| style='text-align:right'| 2313367
+| style='text-align:right'| 1385928
 | &nbsp;
-| style='text-align:right'| 5018
+| style='text-align:right'| 1661
-| style='text-align:right'| 259661061
+| style='text-align:right'| 143989628
-| 101,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=linHum0&position=NW_012160424:64875-65077 NW_012160424:64875-65077]
+| 95,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13&position=4-7:15697982-15698172 4-7:15697982-15698172]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=linHum0 plot linHum0]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gliRes13 plot gliRes13]
 |-
-| 161
+| 173
-| 2012
+| 2016
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000183805.3/ GCA_000183805.3]
+| style='text-align:center;'| tbd
-| Newbler v. 2.1-PreRelease-4/28/2009
+| tbd
-| style='text-align:right'| 15889
+| style='text-align:right'| 3555119
-| style='text-align:right'| 37
+| style='text-align:right'| 33
-| style='text-align:right'| 1294459
+| style='text-align:right'| 133654191
 | &nbsp;
-| style='text-align:right'| 188
+| style='text-align:right'| 4102
-| style='text-align:right'| 16478676
+| style='text-align:right'| 21270991545
-| 109,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1&position=JH717180v1:404-622 JH717180v1:404-622]
+| 338,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5&position=CYUI01005848v1:13590-14266 CYUI01005848v1:13590-14266]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loaLoa1 plot loaLoa1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor5 plot gorGor5]
 |-
-| 163
+| 174
-| 2012
+| 2009
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238955.1/ GCF_000238955.1]
+| style='text-align:center;'| tbd
-| AllPaths v. R37043
+| tbd
-| style='text-align:right'| 48899
+| style='text-align:right'| 109810
-| style='text-align:right'| 38
+| style='text-align:right'| 42
-| style='text-align:right'| 3205287
+| style='text-align:right'| 5802860
 | &nbsp;
-| style='text-align:right'| 4159
+| style='text-align:right'| 1251.5
-| style='text-align:right'| 307830483
+| style='text-align:right'| 319005845
-| 9605,	105,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1&position=JH720664:938440-957754 JH720664:938440-957754]
+| 196,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1&position=Hcon_Contig0025586:3955-4347 Hcon_Contig0025586:3955-4347]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mayZeb1 plot mayZeb1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon1 plot haeCon1]
 |-
-| 164
+| 175
-| 2009
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 25253
+| style='text-align:right'| 53818
-| style='text-align:right'| 45
+| style='text-align:right'| 43
-| style='text-align:right'| 1794885
+| style='text-align:right'| 3892613
 | &nbsp;
-| style='text-align:right'| 2825
+| style='text-align:right'| 570
-| style='text-align:right'| 133788059
+| style='text-align:right'| 187299643
-| 169,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1&position=chr3:54352580-54352918 chr3:54352580-54352918]
+| 2147,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2&position=scaffold_1557:10532-14826 scaffold_1557:10532-14826]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal1 plot melGal1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon2 plot haeCon2]
 |-
-| 165
+| 176
-| 2008
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000172435.1/ GCA_000172435.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691405.1/ GCF_000691405.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 12515
+| style='text-align:right'| 13685
-| style='text-align:right'| 41
+| style='text-align:right'| 36
-| style='text-align:right'| 832837
+| style='text-align:right'| 754065
 | &nbsp;
-| style='text-align:right'| 375
+| style='text-align:right'| 301
-| style='text-align:right'| 21806223
+| style='text-align:right'| 41720730
-| 157,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1&position=MhA1_Contig2844:850-1164 MhA1_Contig2844:850-1164]
+| 548,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1&position=KK653364:30569-31666 KK653364:30569-31666]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melHap1 plot melHap1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halAlb1 plot halAlb1]
 |-
-| 166
+| 177
-| 2008
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1 melInc1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180415.1/ GCA_000180415.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000737465.1/ GCF_000737465.1]
-| tbd
+| SOAPdenovo2 v. May 2014
-| style='text-align:right'| 19330
+| style='text-align:right'| 16099
 | style='text-align:right'| 40
-| style='text-align:right'| 1244828
+| style='text-align:right'| 1241068
 | &nbsp;
-| style='text-align:right'| 558
+| style='text-align:right'| 4586
-| style='text-align:right'| 47252172
+| style='text-align:right'| 98353830
-| 183,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1&position=Minc_Contig6373:3669-4035 Minc_Contig6373:3669-4035]
+| 79,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1&position=KL869431:1084034-1084192 KL869431:1084034-1084192]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc1 plot melInc1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halLeu1 plot halLeu1]
 |-
-| 167
+| 178
-| 2008
+| 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239415.1/ GCF_000239415.1]
-| tbd
+| ALLPATHS-LG v. R35951
-| style='text-align:right'| 22743
+| style='text-align:right'| 34584
-| style='text-align:right'| 41
+| style='text-align:right'| 37
-| style='text-align:right'| 1594354
+| style='text-align:right'| 2342045
 | &nbsp;
-| style='text-align:right'| 1067
+| style='text-align:right'| 3524.5
-| style='text-align:right'| 83086394
+| style='text-align:right'| 202958431
-| 183,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2&position=MiV1ctg2756:3669-4035 MiV1ctg2756:3669-4035]
+| 10390,	20,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1&position=JH425331:1373378-1394177 JH425331:1373378-1394177]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc2 plot melInc2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hapBur1 plot hapBur1]
 |-
-| 168
+| 179
 | 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238935.1/ GCF_000238935.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000223415.1/ GCA_000223415.1]
-| Celera v. 6.1
+| Celera assembler v. 6.0
-| style='text-align:right'| 99875
+| style='text-align:right'| 3302
-| style='text-align:right'| 41
+| style='text-align:right'| 51
-| style='text-align:right'| 5463070
+| style='text-align:right'| 353946
 | &nbsp;
-| style='text-align:right'| 6271
+| style='text-align:right'| 673
-| style='text-align:right'| 754338919
+| style='text-align:right'| 12041725
-| 120,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1&position=JH556605:5210251-5210491 JH556605:5210251-5210491]
+| 317,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1&position=GL996135v1:102345-102979 GL996135v1:102345-102979]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melUnd1 plot melUnd1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetBac1 plot hetBac1]
 |-
-| 169
+| 180
-| 2014
+| 1880
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1]
+| style='text-align:center;'| homNea0
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691845.1/ GCF_000691845.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.6
+| tbd
-| style='text-align:right'| 37279
+| style='text-align:right'| 148
-| style='text-align:right'| 43
+| style='text-align:right'| 30
-| style='text-align:right'| 2280064
+| style='text-align:right'| 4725
 | &nbsp;
-| style='text-align:right'| 174
+| style='text-align:right'| 14.5
-| style='text-align:right'| 103616988
+| style='text-align:right'| 2669
-| 543,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1&position=KK705997:21022-22108 KK705997:21022-22108]
+| 37,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homNea0&position=151586_3339_2553:20-94 151586_3339_2553:20-94]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=merNub1 plot merNub1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homNea0 plot homNea0]
+|-
+| 182
+| 2006
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13 lauRas13]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 43311
+| style='text-align:right'| 36
+| style='text-align:right'| 1891314
+| &nbsp;
+| style='text-align:right'| 1493
+| style='text-align:right'| 210427636
+| 125,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13&position=5-6:22761072-22761322 5-6:22761072-22761322]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lauRas13 plot lauRas13]
 |-
-| 170
+| 183
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695765.1/ GCF_000695765.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691785.1/ GCF_000691785.1]
 | SOAPdenovo v. 1.6
-| style='text-align:right'| 52863
+| style='text-align:right'| 16795
-| style='text-align:right'| 36
+| style='text-align:right'| 33
-| style='text-align:right'| 2585696
+| style='text-align:right'| 749994
 | &nbsp;
-| style='text-align:right'| 257
+| style='text-align:right'| 94
-| style='text-align:right'| 120590969
+| style='text-align:right'| 31438992
-| 271,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1&position=JJRI01098248:16372-16914 JJRI01098248:16372-16914]
+| 199,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1&position=JJRK01010260:4452-4850 JJRK01010260:4452-4850]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesUni1 plot mesUni1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepDis1 plot lepDis1]
 |-
-| 171
+| 184
-| 2013
+| 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000371365.1/ GCF_000371365.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000242695.1/ GCF_000242695.1]
-| AllPathsLG v. September 2012
+| AllPaths v. R38293
-| style='text-align:right'| 575203
+| style='text-align:right'| 77276
-| style='text-align:right'| 36
+| style='text-align:right'| 37
-| style='text-align:right'| 27589830
+| style='text-align:right'| 4579890
 | &nbsp;
-| style='text-align:right'| 1941
+| style='text-align:right'| 1084
-| style='text-align:right'| 2513509860
+| style='text-align:right'| 350156295
-| 2028,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2&position=KB856326:64184-68240 KB856326:64184-68240]
+| 488,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1&position=chrLG5:14840992-14841969 chrLG5:14840992-14841969]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musDom2 plot musDom2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepOcu1 plot lepOcu1]
 |-
-| 172
+| 185
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000507365.1/ GCF_000507365.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000466285.1/ GCA_000466285.1]
-| Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010
+| Newbler v. 2.7
-| style='text-align:right'| 30870
+| style='text-align:right'| 768187
-| style='text-align:right'| 43
+| style='text-align:right'| 35
-| style='text-align:right'| 1735538
+| style='text-align:right'| 32420899
 | &nbsp;
-| style='text-align:right'| 1580
+| style='text-align:right'| 153
-| style='text-align:right'| 123448969
+| style='text-align:right'| 1525909318
-| 93,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1&position=KI659398v1:132-318 KI659398v1:132-318]
+| 207,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1&position=KE997215:997-1411 KE997215:997-1411]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=necAme1 plot necAme1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=letCam1 plot letCam1]
 |-
-| 173
+| 186
-| 2007
+| 1880
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1]
+| style='text-align:center;'| linHum0
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000217595.1/ GCF_000217595.1]
-| tbd
+| CABOG v. 5.3
-| style='text-align:right'| 540729
+| style='text-align:right'| 42080
-| style='text-align:right'| 40
+| style='text-align:right'| 41
-| style='text-align:right'| 30645450
+| style='text-align:right'| 2313367
 | &nbsp;
-| style='text-align:right'| 589
+| style='text-align:right'| 5018
-| style='text-align:right'| 1501673463
+| style='text-align:right'| 259661061
-| 353,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1&position=scaffold_201:423580-424286 scaffold_201:423580-424286]
+| 101,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=linHum0&position=NW_012160424:64875-65077 NW_012160424:64875-65077]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nemVec1 plot nemVec1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=linHum0 plot linHum0]
 |-
-| 174
+| 187
-| 2011
+| 2012
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239395.1/ GCF_000239395.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000183805.3/ GCA_000183805.3]
-| ALLPATHS-LG v. R36800
+| Newbler v. 2.1-PreRelease-4/28/2009
-| style='text-align:right'| 62939
+| style='text-align:right'| 15889
-| style='text-align:right'| 46
+| style='text-align:right'| 37
-| style='text-align:right'| 6697998
+| style='text-align:right'| 1294459
 | &nbsp;
-| style='text-align:right'| 1655
+| style='text-align:right'| 188
-| style='text-align:right'| 274117853
+| style='text-align:right'| 16478676
-| 8242,	20,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1&position=JH422273:8382583-8399086 JH422273:8382583-8399086]
+| 109,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1&position=JH717180v1:404-622 JH717180v1:404-622]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=neoBri1 plot neoBri1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loaLoa1 plot loaLoa1]
 |-
-| 175
+| 188
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000735185.1/ GCF_000735185.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000692015.1/ GCF_000692015.1]
-| Celera Assembler v. 7.0
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 164483
+| style='text-align:right'| 75103
-| style='text-align:right'| 34
+| style='text-align:right'| 35
-| style='text-align:right'| 7109993
+| style='text-align:right'| 4570292
 | &nbsp;
-| style='text-align:right'| 199
+| style='text-align:right'| 206
-| style='text-align:right'| 393266432
+| style='text-align:right'| 245456943
-| 407,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1&position=KL665414:596304-597118 KL665414:596304-597118]
+| 5268,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1&position=KK733349:4046063-4056599 KK733349:4046063-4056599]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=notCor1 plot notCor1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manVit1 plot manVit1]
 |-
-| 176
+| 190
-| 2013
+| 2012
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000499405.1/ GCA_000499405.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238955.1/ GCF_000238955.1]
-| tbd
+| AllPaths v. R37043
-| style='text-align:right'| 5247
+| style='text-align:right'| 48899
-| style='text-align:right'| 39
+| style='text-align:right'| 38
-| style='text-align:right'| 423838
+| style='text-align:right'| 3205287
 | &nbsp;
-| style='text-align:right'| 2124
+| style='text-align:right'| 4159
-| style='text-align:right'| 28089581
+| style='text-align:right'| 307830483
-| 739,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1&position=HG738137v1:12037947-12039425 HG738137v1:12037947-12039425]
+| 9605,	105,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1&position=JH720664:938440-957754 JH720664:938440-957754]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oncVol1 plot oncVol1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mayZeb1 plot mayZeb1]
 |-
-| 177
+| 191
-| 2011
+| 2009
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 80799
+| style='text-align:right'| 25253
-| style='text-align:right'| 39
+| style='text-align:right'| 45
-| style='text-align:right'| 4892346
+| style='text-align:right'| 1794885
 | &nbsp;
-| style='text-align:right'| 6067
+| style='text-align:right'| 2825
-| style='text-align:right'| 586359236
+| style='text-align:right'| 133788059
-| 9755,	32,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1&position=GL831139:3510855-3530396 GL831139:3510855-3530396]
+| 169,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1&position=chr3:54352580-54352918 chr3:54352580-54352918]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oreNil1 plot oreNil1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal1 plot melGal1]
 |-
-| 178
+| 192
-| 2006
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146605.2/ GCF_000146605.2]
+| MaSuRCA v. 1.9.2
+| style='text-align:right'| 101903
+| style='text-align:right'| 36
+| style='text-align:right'| 4643970
+| &nbsp;
+| style='text-align:right'| 197
+| style='text-align:right'| 188019328
+| 173,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5&position=chrUn_NW_011217171v1:1-347 chrUn_NW_011217171v1:1-347]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal5 plot melGal5]
+|-
+| 193
+| 2008
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000172435.1/ GCA_000172435.1]
 | tbd
-| style='text-align:right'| 191645
+| style='text-align:right'| 12515
-| style='text-align:right'| 40
+| style='text-align:right'| 41
-| style='text-align:right'| 12487530
+| style='text-align:right'| 832837
 | &nbsp;
-| style='text-align:right'| 1210
+| style='text-align:right'| 375
-| style='text-align:right'| 620191379
+| style='text-align:right'| 21806223
-| 379,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1&position=chr9:5041681-5042439 chr9:5041681-5042439]
+| 157,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1&position=MhA1_Contig2844:850-1164 MhA1_Contig2844:850-1164]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat1 plot oryLat1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melHap1 plot melHap1]
 |-
-| 179
+| 194
-| 2005
+| 2008
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1 melInc1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180415.1/ GCA_000180415.1]
 | tbd
-| style='text-align:right'| 189087
+| style='text-align:right'| 19330
 | style='text-align:right'| 40
-| style='text-align:right'| 12356700
+| style='text-align:right'| 1244828
 | &nbsp;
-| style='text-align:right'| 1234
+| style='text-align:right'| 558
-| style='text-align:right'| 592910738
+| style='text-align:right'| 47252172
-| 379,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2&position=chr9:5041681-5042439 chr9:5041681-5042439]
+| 183,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1&position=Minc_Contig6373:3669-4035 Minc_Contig6373:3669-4035]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat2 plot oryLat2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc1 plot melInc1]
 |-
-| 180
+| 195
-| 2013
+| 2008
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000341325.1/ GCA_000341325.1]
-| Velvet v. 1.2.07
-| style='text-align:right'| 23300
-| style='text-align:right'| 42
-| style='text-align:right'| 1084666
-| &nbsp;
-| style='text-align:right'| 1396
-| style='text-align:right'| 66559726
-| 101,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1&position=KB454925:8492-8694 KB454925:8492-8694]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panRed1 plot panRed1]
-|-
-| 181
-| 2007
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 855653
+| style='text-align:right'| 22743
-| style='text-align:right'| 36
+| style='text-align:right'| 41
-| style='text-align:right'| 38339527
+| style='text-align:right'| 1594354
 | &nbsp;
-| style='text-align:right'| 201
+| style='text-align:right'| 1067
-| style='text-align:right'| 932728649
+| style='text-align:right'| 83086394
-| 362,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1&position=Contig99174:237-961 Contig99174:237-961]
+| 183,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2&position=MiV1ctg2756:3669-4035 MiV1ctg2756:3669-4035]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar1 plot petMar1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc2 plot melInc2]
 |-
-| 182
+| 196
-| 2010
+| 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000148955.1/ GCA_000148955.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000238935.1/ GCF_000238935.1]
-| Arachne v. 3.2
+| Celera v. 6.1
-| style='text-align:right'| 836219
+| style='text-align:right'| 99875
-| style='text-align:right'| 37
+| style='text-align:right'| 41
-| style='text-align:right'| 38092404
+| style='text-align:right'| 5463070
 | &nbsp;
-| style='text-align:right'| 692
+| style='text-align:right'| 6271
-| style='text-align:right'| 2324558773
+| style='text-align:right'| 754338919
-| 363,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2&position=GL498477:1987-2713 GL498477:1987-2713]
+| 120,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1&position=JH556605:5210251-5210491 JH556605:5210251-5210491]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar2 plot petMar2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melUnd1 plot melUnd1]
 |-
-| 183
+| 197
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1 picPub1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699005.1/ GCF_000699005.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000691845.1/ GCF_000691845.1]
 | SOAPdenovo v. 1.6
-| style='text-align:right'| 397798
+| style='text-align:right'| 37279
+| style='text-align:right'| 43
+| style='text-align:right'| 2280064
+| &nbsp;
+| style='text-align:right'| 174
+| style='text-align:right'| 103616988
+| 543,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1&position=KK705997:21022-22108 KK705997:21022-22108]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=merNub1 plot merNub1]
+|-
+| 198
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000695765.1/ GCF_000695765.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 52863
 | style='text-align:right'| 36
-| style='text-align:right'| 17968999
+| style='text-align:right'| 2585696
 | &nbsp;
-| style='text-align:right'| 7796
+| style='text-align:right'| 257
-| style='text-align:right'| 3299119050
+| style='text-align:right'| 120590969
-| 4915,	3,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1&position=KL215520:252741-262573 KL215520:252741-262573]
+| 271,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1&position=JJRI01098248:16372-16914 JJRI01098248:16372-16914]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=picPub1 plot picPub1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesUni1 plot mesUni1]
 |-
-| 184
+| 199
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1 poeFor1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000485575.1/ GCF_000485575.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000371365.1/ GCF_000371365.1]
-| AllPaths-LG v. July 2013
+| AllPathsLG v. September 2012
-| style='text-align:right'| 161806
+| style='text-align:right'| 575203
-| style='text-align:right'| 52
+| style='text-align:right'| 36
-| style='text-align:right'| 28441594
+| style='text-align:right'| 27589830
+| &nbsp;
+| style='text-align:right'| 1941
+| style='text-align:right'| 2513509860
+| 2028,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2&position=KB856326:64184-68240 KB856326:64184-68240]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musDom2 plot musDom2]
+|-
+| 200
+| 2013
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000507365.1/ GCF_000507365.1]
+| Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010
+| style='text-align:right'| 30870
+| style='text-align:right'| 43
+| style='text-align:right'| 1735538
 | &nbsp;
-| style='text-align:right'| 4650
+| style='text-align:right'| 1580
-| style='text-align:right'| 990605574
+| style='text-align:right'| 123448969
-| 1886,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1&position=KI520679:7484-11256 KI520679:7484-11256]
+| 93,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1&position=KI659398v1:132-318 KI659398v1:132-318]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeFor1 plot poeFor1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=necAme1 plot necAme1]
 |-
-| 185
+| 201
-| 2014
+| 2007
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1 poeRet1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 71291
+| style='text-align:right'| 540729
-| style='text-align:right'| 38
+| style='text-align:right'| 40
-| style='text-align:right'| 4816409
+| style='text-align:right'| 30645450
 | &nbsp;
-| style='text-align:right'| 1511
+| style='text-align:right'| 589
-| style='text-align:right'| 343849361
+| style='text-align:right'| 1501673463
-| 8790,	4,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1&position=chrLG5:27506035-27523618 chrLG5:27506035-27523618]
+| 353,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1&position=scaffold_201:423580-424286 scaffold_201:423580-424286]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeRet1 plot poeRet1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nemVec1 plot nemVec1]
+|-
+| 202
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239395.1/ GCF_000239395.1]
+| ALLPATHS-LG v. R36800
+| style='text-align:right'| 62939
+| style='text-align:right'| 46
+| style='text-align:right'| 6697998
+| &nbsp;
+| style='text-align:right'| 1655
+| style='text-align:right'| 274117853
+| 8242,	20,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1&position=JH422273:8382583-8399086 JH422273:8382583-8399086]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=neoBri1 plot neoBri1]
 |-
-| 186
+| 203
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708225.1/ GCF_000708225.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 33878
+| style='text-align:right'| 32623
-| style='text-align:right'| 44
+| style='text-align:right'| 43
-| style='text-align:right'| 2639333
+| style='text-align:right'| 3676893
 | &nbsp;
-| style='text-align:right'| 1128
+| style='text-align:right'| 251
-| style='text-align:right'| 98936342
+| style='text-align:right'| 104452416
-| 1626,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1&position=scaffold830:51430-54682 scaffold830:51430-54682]
+| 1496,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1&position=KL409846:432608-435600 KL409846:432608-435600]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priExs1 plot priExs1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nipNip1 plot nipNip1]
 |-
-| 187
+| 204
-| 2007
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1 priPac1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000735185.1/ GCF_000735185.1]
-| tbd
+| Celera Assembler v. 7.0
-| style='text-align:right'| 29257
+| style='text-align:right'| 164483
-| style='text-align:right'| 43
+| style='text-align:right'| 34
-| style='text-align:right'| 1929264
+| style='text-align:right'| 7109993
 | &nbsp;
-| style='text-align:right'| 448
+| style='text-align:right'| 199
-| style='text-align:right'| 80615899
+| style='text-align:right'| 393266432
-| 500,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1&position=chrUn:71534792-71535792 chrUn:71534792-71535792]
+| 407,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1&position=KL665414:596304-597118 KL665414:596304-597118]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac1 plot priPac1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=notCor1 plot notCor1]
 |-
-| 188
+| 205
-| 2008
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2 priPac2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180635.1/ GCA_000180635.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000499405.1/ GCA_000499405.1]
 | tbd
-| style='text-align:right'| 19318
+| style='text-align:right'| 5247
 | style='text-align:right'| 39
-| style='text-align:right'| 1050200
+| style='text-align:right'| 423838
 | &nbsp;
-| style='text-align:right'| 259
+| style='text-align:right'| 2124
-| style='text-align:right'| 25863820
+| style='text-align:right'| 28089581
-| 500,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2&position=ABKE01002096:3239-4239 ABKE01002096:3239-4239]
+| 739,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1&position=HG738137v1:12037947-12039425 HG738137v1:12037947-12039425]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac2 plot priPac2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oncVol1 plot oncVol1]
 |-
-| 189
+| 206
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000692075.1/ GCF_000692075.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 75782
+| style='text-align:right'| 40
+| style='text-align:right'| 6783674
+| &nbsp;
+| style='text-align:right'| 4083
+| style='text-align:right'| 456471575
+| 1119,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1&position=KK734928:246587-248825 KK734928:246587-248825]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=opiHoa1 plot opiHoa1]
+|-
+| 207
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 36759
+| style='text-align:right'| 80799
-| style='text-align:right'| 40
+| style='text-align:right'| 39
-| style='text-align:right'| 2176431
+| style='text-align:right'| 4892346
 | &nbsp;
-| style='text-align:right'| 321
+| style='text-align:right'| 6067
-| style='text-align:right'| 82136541
+| style='text-align:right'| 586359236
-| 500,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3&position=Ppa_Contig5:941324-942324 Ppa_Contig5:941324-942324]
+| 9755,	32,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1&position=GL831139:3510855-3530396 GL831139:3510855-3530396]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac3 plot priPac3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oreNil1 plot oreNil1]
 |-
-| 190
+| 208
-| 2013
+| 2006
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000331425.1/ GCF_000331425.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.5
+| tbd
-| style='text-align:right'| 140033
+| style='text-align:right'| 191645
-| style='text-align:right'| 36
+| style='text-align:right'| 40
-| style='text-align:right'| 7836448
+| style='text-align:right'| 12487530
 | &nbsp;
-| style='text-align:right'| 130
+| style='text-align:right'| 1210
-| style='text-align:right'| 200423267
+| style='text-align:right'| 620191379
-| 7517,	10,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1&position=KB221191:4083820-4098863 KB221191:4083820-4098863]
+| 379,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1&position=chr9:5041681-5042439 chr9:5041681-5042439]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pseHum1 plot pseHum1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat1 plot oryLat1]
 |-
-| 191
+| 209
-| 2014
+| 2005
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1 pteGut1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699245.1/ GCF_000699245.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.6
+| tbd
-| style='text-align:right'| 41594
+| style='text-align:right'| 189087
-| style='text-align:right'| 36
+| style='text-align:right'| 40
-| style='text-align:right'| 2007893
+| style='text-align:right'| 12356700
 | &nbsp;
-| style='text-align:right'| 100
+| style='text-align:right'| 1234
-| style='text-align:right'| 106772284
+| style='text-align:right'| 592910738
-| 534,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1&position=JMFR01060883:1891-2959 JMFR01060883:1891-2959]
+| 379,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2&position=chr9:5041681-5042439 chr9:5041681-5042439]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteGut1 plot pteGut1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat2 plot oryLat2]
 |-
-| 192
+| 210
-| 2011
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239375.1/ GCF_000239375.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000341325.1/ GCA_000341325.1]
-| ALLPATHS-LG v. R37016
+| Velvet v. 1.2.07
-| style='text-align:right'| 36249
+| style='text-align:right'| 23300
-| style='text-align:right'| 38
+| style='text-align:right'| 42
-| style='text-align:right'| 2385815
+| style='text-align:right'| 1084666
 | &nbsp;
-| style='text-align:right'| 3630
+| style='text-align:right'| 1396
-| style='text-align:right'| 214952201
+| style='text-align:right'| 66559726
-| 5131,	20,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1&position=JH419262:1608400-1618681 JH419262:1608400-1618681]
+| 101,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1&position=KB454925:8492-8694 KB454925:8492-8694]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=punNye1 plot punNye1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panRed1 plot panRed1]
 |-
-| 193
+| 211
-| 2012
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0 repBase0]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1 pelCri1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687375.1/ GCF_000687375.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 54
+| style='text-align:right'| 42891
-| style='text-align:right'| 39
+| style='text-align:right'| 37
-| style='text-align:right'| 2426
+| style='text-align:right'| 2053042
 | &nbsp;
-| style='text-align:right'| 81.5
+| style='text-align:right'| 265
-| style='text-align:right'| 7619
+| style='text-align:right'| 127612523
-| 70,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0&position=MER51A:232-372 MER51A:232-372]
+| 574,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1&position=KK474798:35527-36675 KK474798:35527-36675]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase0 plot repBase0]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelCri1 plot pelCri1]
 |-
-| 194
+| 212
-| 2012
+| 2007
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1 repBase1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 73
+| style='text-align:right'| 855653
-| style='text-align:right'| 39
+| style='text-align:right'| 36
-| style='text-align:right'| 3249
+| style='text-align:right'| 38339527
 | &nbsp;
-| style='text-align:right'| 77
+| style='text-align:right'| 201
-| style='text-align:right'| 9691
+| style='text-align:right'| 932728649
-| 70,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1&position=MER51A:232-372 MER51A:232-372]
+| 362,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1&position=Contig99174:237-961 Contig99174:237-961]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase1 plot repBase1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar1 plot petMar1]
 |-
-| 195
+| 213
-| 1880
+| 2010
-| style='text-align:center;'| repBase2
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000148955.1/ GCA_000148955.1]
-| tbd
+| Arachne v. 3.2
-| style='text-align:right'| 51
+| style='text-align:right'| 836219
-| style='text-align:right'| 40
+| style='text-align:right'| 37
-| style='text-align:right'| 2203
+| style='text-align:right'| 38092404
 | &nbsp;
-| style='text-align:right'| 79
+| style='text-align:right'| 692
-| style='text-align:right'| 6907
+| style='text-align:right'| 2324558773
-| 70,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase2&position=MER51A:232-372 MER51A:232-372]
+| 363,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2&position=GL498477:1987-2713 GL498477:1987-2713]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase2 plot repBase2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar2 plot petMar2]
 |-
-| 197
+| 214
-| 1880
+| 2014
-| style='text-align:center;'| ricCom1
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1 phaCar1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151685.1/ GCF_000151685.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000708925.1/ GCF_000708925.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 430308
+| style='text-align:right'| 41541
-| style='text-align:right'| 35
+| style='text-align:right'| 34
-| style='text-align:right'| 18638247
+| style='text-align:right'| 1992939
 | &nbsp;
-| style='text-align:right'| 2948
+| style='text-align:right'| 36
-| style='text-align:right'| 2156357980
+| style='text-align:right'| 26355615
-| 460,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ricCom1&position=EQ974418:17730-18650 EQ974418:17730-18650]
+| 779,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1&position=KL418261:30029-31587 KL418261:30029-31587]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ricCom1 plot ricCom1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaCar1 plot phaCar1]
 |-
-| 198
+| 215
-| 2003
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1 sacCer1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1 phaLep1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687285.1/ GCF_000687285.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 666
+| style='text-align:right'| 26611
-| style='text-align:right'| 45
+| style='text-align:right'| 38
-| style='text-align:right'| 76615
+| style='text-align:right'| 1718609
 | &nbsp;
-| style='text-align:right'| 1914.5
+| style='text-align:right'| 216
-| style='text-align:right'| 2711249
+| style='text-align:right'| 85779441
-| 50,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1&position=chr7:519107-519207 chr7:519107-519207]
+| 1077,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1&position=KK455387:47187-49341 KK455387:47187-49341]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer1 plot sacCer1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaLep1 plot phaLep1]
 |-
-| 199
+| 216
-| 2008
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2 sacCer2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1 phoRub1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000687265.1/ GCA_000687265.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 669
+| style='text-align:right'| 17140
-| style='text-align:right'| 45
+| style='text-align:right'| 43
-| style='text-align:right'| 76812
+| style='text-align:right'| 1055248
 | &nbsp;
-| style='text-align:right'| 1868
+| style='text-align:right'| 135
-| style='text-align:right'| 2711600
+| style='text-align:right'| 39934970
-| 71,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2&position=chrX:120898-121040 chrX:120898-121040]
+| 526,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1&position=KK424259:7588-8640 KK424259:7588-8640]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer2 plot sacCer2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phoRub1 plot phoRub1]
 |-
-| 200
+| 217
-| 2011
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1 picPub1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146045.2/ GCF_000146045.2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699005.1/ GCF_000699005.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 669
+| style='text-align:right'| 397798
-| style='text-align:right'| 45
+| style='text-align:right'| 36
-| style='text-align:right'| 78716
+| style='text-align:right'| 17968999
 | &nbsp;
-| style='text-align:right'| 1868
+| style='text-align:right'| 7796
-| style='text-align:right'| 2711582
+| style='text-align:right'| 3299119050
-| 1988,	10,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3&position=chrVIII:212266-216251 chrVIII:212266-216251]
+| 4915,	3,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1&position=KL215520:252741-262573 KL215520:252741-262573]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer3 plot sacCer3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=picPub1 plot picPub1]
 |-
-| 201
+| 218
 | 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1 sebNig1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1 poeFor1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475235.1/ GCA_000475235.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000485575.1/ GCF_000485575.1]
-| tbd
+| AllPaths-LG v. July 2013
-| style='text-align:right'| 344468
+| style='text-align:right'| 161806
-| style='text-align:right'| 43
+| style='text-align:right'| 52
-| style='text-align:right'| 18020844
+| style='text-align:right'| 28441594
 | &nbsp;
-| style='text-align:right'| 94
+| style='text-align:right'| 4650
-| style='text-align:right'| 249080272
+| style='text-align:right'| 990605574
-| 492,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1&position=AUPR01114153:357-1341 AUPR01114153:357-1341]
+| 1886,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1&position=KI520679:7484-11256 KI520679:7484-11256]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebNig1 plot sebNig1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeFor1 plot poeFor1]
 |-
-| 202
+| 219
-| 2013
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1 sebRub1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1 poeRet1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475215.1/ GCA_000475215.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.05
+| tbd
-| style='text-align:right'| 299208
+| style='text-align:right'| 71291
 | style='text-align:right'| 38
-| style='text-align:right'| 14417679
+| style='text-align:right'| 4816409
 | &nbsp;
-| style='text-align:right'| 139
+| style='text-align:right'| 1511
-| style='text-align:right'| 352997550
+| style='text-align:right'| 343849361
-| 408,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1&position=KI445670:61530-62346 KI445670:61530-62346]
+| 8790,	4,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1&position=chrLG5:27506035-27523618 chrLG5:27506035-27523618]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebRub1 plot sebRub1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeRet1 plot poeRet1]
 |-
-| 203
+| 220
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1 stePar1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690725.1/ GCF_000690725.1]
+| style='text-align:center;'| tbd
-| ALLPATHS-LG v. August 2013
+| tbd
-| style='text-align:right'| 96483
+| style='text-align:right'| 33878
-| style='text-align:right'| 40
+| style='text-align:right'| 44
-| style='text-align:right'| 8151514
+| style='text-align:right'| 2639333
 | &nbsp;
-| style='text-align:right'| 3673
+| style='text-align:right'| 1128
-| style='text-align:right'| 549500672
+| style='text-align:right'| 98936342
-| 2624,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1&position=KK581067:134955-140203 KK581067:134955-140203]
+| 1626,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1&position=scaffold830:51430-54682 scaffold830:51430-54682]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=stePar1 plot stePar1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priExs1 plot priExs1]
 |-
-| 204
+| 221
-| 2005
+| 2007
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1 strPur1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1 priPac1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 658932
+| style='text-align:right'| 29257
-| style='text-align:right'| 40
+| style='text-align:right'| 43
-| style='text-align:right'| 35574440
+| style='text-align:right'| 1929264
 | &nbsp;
-| style='text-align:right'| 847.5
+| style='text-align:right'| 448
-| style='text-align:right'| 1824767726
+| style='text-align:right'| 80615899
-| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1&position=Scaffold18311:2619-4531 Scaffold18311:2619-4531]
+| 500,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1&position=chrUn:71534792-71535792 chrUn:71534792-71535792]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur1 plot strPur1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac1 plot priPac1]
 |-
-| 205
+| 222
-| 2006
+| 2008
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2 strPur2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2 priPac2]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000180635.1/ GCA_000180635.1]
 | tbd
-| style='text-align:right'| 611722
+| style='text-align:right'| 19318
 | style='text-align:right'| 39
-| style='text-align:right'| 30968979
+| style='text-align:right'| 1050200
 | &nbsp;
-| style='text-align:right'| 1453
+| style='text-align:right'| 259
-| style='text-align:right'| 2323533345
+| style='text-align:right'| 25863820
-| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2&position=Scaffold47464:201872-203784 Scaffold47464:201872-203784]
+| 500,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2&position=ABKE01002096:3239-4239 ABKE01002096:3239-4239]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur2 plot strPur2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac2 plot priPac2]
 |-
-| 206
+| 223
-| 2009
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3 strPur3]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 689739
+| style='text-align:right'| 36759
 | style='text-align:right'| 40
-| style='text-align:right'| 35781206
+| style='text-align:right'| 2176431
 | &nbsp;
-| style='text-align:right'| 1763
+| style='text-align:right'| 321
-| style='text-align:right'| 2733632009
+| style='text-align:right'| 82136541
-| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3&position=Scaffold85:237230-239142 Scaffold85:237230-239142]
+| 500,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3&position=Ppa_Contig5:941324-942324 Ppa_Contig5:941324-942324]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur3 plot strPur3]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac3 plot priPac3]
 |-
-| 207
+| 224
-| 2011
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000331425.1/ GCF_000331425.1]
-| Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement
+| SOAPdenovo v. 1.5
-| style='text-align:right'| 888256
+| style='text-align:right'| 140033
-| style='text-align:right'| 42
+| style='text-align:right'| 36
-| style='text-align:right'| 54558021
+| style='text-align:right'| 7836448
 | &nbsp;
-| style='text-align:right'| 2360
+| style='text-align:right'| 130
-| style='text-align:right'| 3918297070
+| style='text-align:right'| 200423267
-| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4&position=Scaffold382:244159-246071 Scaffold382:244159-246071]
+| 7517,	10,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1&position=KB221191:4083820-4098863 KB221191:4083820-4098863]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur4 plot strPur4]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pseHum1 plot pseHum1]
 |-
-| 208
+| 225
-| 2011
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1 strRat1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1 pteGut1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000699245.1/ GCF_000699245.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 9910
+| style='text-align:right'| 41594
-| style='text-align:right'| 40
+| style='text-align:right'| 36
-| style='text-align:right'| 540468
+| style='text-align:right'| 2007893
+| &nbsp;
+| style='text-align:right'| 100
+| style='text-align:right'| 106772284
+| 534,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1&position=JMFR01060883:1891-2959 JMFR01060883:1891-2959]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteGut1 plot pteGut1]
+|-
+| 226
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000239375.1/ GCF_000239375.1]
+| ALLPATHS-LG v. R37016
+| style='text-align:right'| 36249
+| style='text-align:right'| 38
+| style='text-align:right'| 2385815
 | &nbsp;
-| style='text-align:right'| 1077
+| style='text-align:right'| 3630
-| style='text-align:right'| 26058414
+| style='text-align:right'| 214952201
-| 113,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1&position=RATTI_contig_57682:4110-4336 RATTI_contig_57682:4110-4336]
+| 5131,	20,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1&position=JH419262:1608400-1618681 JH419262:1608400-1618681]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat1 plot strRat1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=punNye1 plot punNye1]
 |-
-| 209
+| 227
 | 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1 pygAde1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001040885.1/ GCA_001040885.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000699105.1/ GCA_000699105.1]
-| tbd
+| SOAPdenovo v. 1.6
-| style='text-align:right'| 8546
+| style='text-align:right'| 38534
-| style='text-align:right'| 41
+| style='text-align:right'| 46
-| style='text-align:right'| 482721
+| style='text-align:right'| 4145677
 | &nbsp;
-| style='text-align:right'| 2233
+| style='text-align:right'| 2165.5
-| style='text-align:right'| 37502032
+| style='text-align:right'| 202245057
-| 67,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2&position=chrUn_LN609483v1:243-377 chrUn_LN609483v1:243-377]
+| 2147,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1&position=KL225502:93242-97536 KL225502:93242-97536]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat2 plot strRat2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pygAde1 plot pygAde1]
 |-
-| 211
+| 228
-| 1880
+| 2013
-| style='text-align:center;'| taeGut0
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1 pytBiv1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000186305.1/ GCF_000186305.1]
+| Soap deNovo v. March 2012
+| style='text-align:right'| 167510
+| style='text-align:right'| 47
+| style='text-align:right'| 14323626
+| &nbsp;
+| style='text-align:right'| 217
+| style='text-align:right'| 396468667
+| 235,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1&position=KE953144:259222-259692 KE953144:259222-259692]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pytBiv1 plot pytBiv1]
+|-
+| 229
+| 2012
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0 repBase0]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 597003
+| style='text-align:right'| 54
-| style='text-align:right'| 49
+| style='text-align:right'| 39
-| style='text-align:right'| 43955858
+| style='text-align:right'| 2426
 | &nbsp;
-| style='text-align:right'| 3833
+| style='text-align:right'| 81.5
-| style='text-align:right'| 2936709220
+| style='text-align:right'| 7619
-| 209,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut0&position=Contig47:5328655-5329073 Contig47:5328655-5329073]
+| 70,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0&position=MER51A:232-372 MER51A:232-372]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut0 plot taeGut0]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase0 plot repBase0]
 |-
-| 212
+| 230
-| 2013
+| 2012
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1 repBase1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151805.1/ GCF_000151805.1]
+| style='text-align:center;'| tbd
-| PCAP v. 2008
+| tbd
-| style='text-align:right'| 602028
+| style='text-align:right'| 73
-| style='text-align:right'| 49
+| style='text-align:right'| 39
-| style='text-align:right'| 44591081
+| style='text-align:right'| 3249
 | &nbsp;
-| style='text-align:right'| 3541
+| style='text-align:right'| 77
-| style='text-align:right'| 2830875406
+| style='text-align:right'| 9691
-| 209,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2&position=chrZ:28813941-28814359 chrZ:28813941-28814359]
+| 70,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1&position=MER51A:232-372 MER51A:232-372]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut2 plot taeGut2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase1 plot repBase1]
 |-
-| 214
+| 231
-| 2013
+| 1880
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1]
+| style='text-align:center;'| repBase2
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ GCA_000400755.1]
-| HAPs v. 0.2.2
-| style='text-align:right'| 97724
-| style='text-align:right'| 36
-| style='text-align:right'| 6776388
-| &nbsp;
-| style='text-align:right'| 184
-| style='text-align:right'| 251435705
-| 503,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1&position=KE121297:329-1335 KE121297:329-1335]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=takFla1 plot takFla1]
-|-
-| 215
-| 2004
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1 tetNig1]
 | style='text-align:center;'| tbd
 | tbd
-| style='text-align:right'| 132260
+| style='text-align:right'| 51
-| style='text-align:right'| 38
+| style='text-align:right'| 40
-| style='text-align:right'| 9178877
+| style='text-align:right'| 2203
 | &nbsp;
-| style='text-align:right'| 3055
+| style='text-align:right'| 79
-| style='text-align:right'| 661840431
+| style='text-align:right'| 6907
-| 413,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1&position=chrUn_random:43732955-43733781 chrUn_random:43732955-43733781]
+| 70,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase2&position=MER51A:232-372 MER51A:232-372]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig1 plot tetNig1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase2 plot repBase2]
 |-
-| 216
+| 233
-| 2007
+| 1880
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]
+| style='text-align:center;'| ricCom1
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151685.1/ GCF_000151685.1]
 | tbd
-| style='text-align:right'| 130250
+| style='text-align:right'| 430308
-| style='text-align:right'| 38
+| style='text-align:right'| 35
-| style='text-align:right'| 9072570
+| style='text-align:right'| 18638247
+| &nbsp;
+| style='text-align:right'| 2948
+| style='text-align:right'| 2156357980
+| 460,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ricCom1&position=EQ974418:17730-18650 EQ974418:17730-18650]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ricCom1 plot ricCom1]
+|-
+| 234
+| 2016
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1 rouAeg1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_001466805.2/ GCF_001466805.2]
+| SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0
+| style='text-align:right'| 74090
+| style='text-align:right'| 36
+| style='text-align:right'| 4591683
 | &nbsp;
-| style='text-align:right'| 3013
+| style='text-align:right'| 5517
-| style='text-align:right'| 657839855
+| style='text-align:right'| 522939887
-| 413,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2&position=chrUn_random:35610230-35611056 chrUn_random:35610230-35611056]
+| 410,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1&position=NW_015493119v1:122550-123371 NW_015493119v1:122550-123371]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig2 plot tetNig2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rouAeg1 plot rouAeg1]
 |-
-| 217
+| 235
-| 2014
+| 2003
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1 tinGut1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1 sacCer1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.6
+| tbd
-| style='text-align:right'| 43221
+| style='text-align:right'| 666
-| style='text-align:right'| 38
+| style='text-align:right'| 45
-| style='text-align:right'| 2742653
+| style='text-align:right'| 76615
 | &nbsp;
-| style='text-align:right'| 279
+| style='text-align:right'| 1914.5
-| style='text-align:right'| 110109614
+| style='text-align:right'| 2711249
-| 416,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1&position=KL400833:106660-107492 KL400833:106660-107492]
+| 50,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1&position=chr7:519107-519207 chr7:519107-519207]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut1 plot tinGut1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer1 plot sacCer1]
 |-
-| 218
+| 236
-| 2014
+| 2008
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2 tinGut2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2 sacCer2]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1]
+| style='text-align:center;'| tbd
-| SOAPdenovo v. 1.6
+| tbd
-| style='text-align:right'| 43210
+| style='text-align:right'| 669
-| style='text-align:right'| 38
+| style='text-align:right'| 45
-| style='text-align:right'| 2741340
+| style='text-align:right'| 76812
 | &nbsp;
-| style='text-align:right'| 279
+| style='text-align:right'| 1868
-| style='text-align:right'| 110101482
+| style='text-align:right'| 2711600
-| 416,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2&position=KL895505:106660-107492 KL895505:106660-107492]
+| 71,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2&position=chrX:120898-121040 chrX:120898-121040]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut2 plot tinGut2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer2 plot sacCer2]
 |-
-| 219
+| 237
-| 2005
+| 2011
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1 triCas1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000146045.2/ GCF_000146045.2]
 | tbd
-| style='text-align:right'| 78796
+| style='text-align:right'| 669
-| style='text-align:right'| 41
+| style='text-align:right'| 45
-| style='text-align:right'| 4117576
+| style='text-align:right'| 78716
 | &nbsp;
-| style='text-align:right'| 794
+| style='text-align:right'| 1868
-| style='text-align:right'| 170185880
+| style='text-align:right'| 2711582
-| 307,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1&position=Reptig797:115-729 Reptig797:115-729]
+| 1988,	10,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3&position=chrVIII:212266-216251 chrVIII:212266-216251]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas1 plot triCas1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer3 plot sacCer3]
 |-
-| 220
+| 238
-| 2005
+| 2013
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1 sebNig1]
-| style='text-align:center;'| tbd
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475235.1/ GCA_000475235.1]
 | tbd
-| style='text-align:right'| 77889
+| style='text-align:right'| 344468
-| style='text-align:right'| 41
+| style='text-align:right'| 43
-| style='text-align:right'| 4122780
+| style='text-align:right'| 18020844
+| &nbsp;
+| style='text-align:right'| 94
+| style='text-align:right'| 249080272
+| 492,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1&position=AUPR01114153:357-1341 AUPR01114153:357-1341]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebNig1 plot sebNig1]
+|-
+| 239
+| 2013
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1 sebRub1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000475215.1/ GCA_000475215.1]
+| SOAPdenovo v. 1.05
+| style='text-align:right'| 299208
+| style='text-align:right'| 38
+| style='text-align:right'| 14417679
 | &nbsp;
-| style='text-align:right'| 885
+| style='text-align:right'| 139
-| style='text-align:right'| 196279053
+| style='text-align:right'| 352997550
-| 192,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2&position=singleUn_1374:29986-30370 singleUn_1374:29986-30370]
+| 408,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1&position=KI445670:61530-62346 KI445670:61530-62346]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas2 plot triCas2]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebRub1 plot sebRub1]
 |-
-| 221
+| 240
-| 2011
+| 2014
-| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1]
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1 stePar1]
-| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181795.1/ GCF_000181795.1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000690725.1/ GCF_000690725.1]
-| PCAP v. January 12, 2007
+| ALLPATHS-LG v. August 2013
+| style='text-align:right'| 96483
+| style='text-align:right'| 40
+| style='text-align:right'| 8151514
+| &nbsp;
+| style='text-align:right'| 3673
+| style='text-align:right'| 549500672
+| 2624,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1&position=KK581067:134955-140203 KK581067:134955-140203]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=stePar1 plot stePar1]
+|-
+| 241
+| 1880
+| style='text-align:center;'| strCam0
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 23662
+| style='text-align:right'| 45
+| style='text-align:right'| 2730974
+| &nbsp;
+| style='text-align:right'| 666
+| style='text-align:right'| 94888209
+| 1134,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam0&position=superscaffold9:6014874-6017142 superscaffold9:6014874-6017142]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam0 plot strCam0]
+|-
+| 242
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1 strCam1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000698965.1/ GCF_000698965.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 23599
+| style='text-align:right'| 45
+| style='text-align:right'| 2718563
+| &nbsp;
+| style='text-align:right'| 646
+| style='text-align:right'| 93976596
+| 1134,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1&position=KL206988:717376-719644 KL206988:717376-719644]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam1 plot strCam1]
+|-
+| 243
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1 strPur1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 658932
+| style='text-align:right'| 40
+| style='text-align:right'| 35574440
+| &nbsp;
+| style='text-align:right'| 847.5
+| style='text-align:right'| 1824767726
+| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1&position=Scaffold18311:2619-4531 Scaffold18311:2619-4531]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur1 plot strPur1]
+|-
+| 244
+| 2006
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2 strPur2]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 611722
+| style='text-align:right'| 39
+| style='text-align:right'| 30968979
+| &nbsp;
+| style='text-align:right'| 1453
+| style='text-align:right'| 2323533345
+| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2&position=Scaffold47464:201872-203784 Scaffold47464:201872-203784]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur2 plot strPur2]
+|-
+| 245
+| 2009
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3 strPur3]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 689739
+| style='text-align:right'| 40
+| style='text-align:right'| 35781206
+| &nbsp;
+| style='text-align:right'| 1763
+| style='text-align:right'| 2733632009
+| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3&position=Scaffold85:237230-239142 Scaffold85:237230-239142]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur3 plot strPur3]
+|-
+| 246
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000002235.3/ GCF_000002235.3]
+| Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement
+| style='text-align:right'| 888256
+| style='text-align:right'| 42
+| style='text-align:right'| 54558021
+| &nbsp;
+| style='text-align:right'| 2360
+| style='text-align:right'| 3918297070
+| 956,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4&position=Scaffold382:244159-246071 Scaffold382:244159-246071]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur4 plot strPur4]
+|-
+| 247
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1 strRat1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 9910
+| style='text-align:right'| 40
+| style='text-align:right'| 540468
+| &nbsp;
+| style='text-align:right'| 1077
+| style='text-align:right'| 26058414
+| 113,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1&position=RATTI_contig_57682:4110-4336 RATTI_contig_57682:4110-4336]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat1 plot strRat1]
+|-
+| 248
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001040885.1/ GCA_001040885.1]
+| tbd
+| style='text-align:right'| 8546
+| style='text-align:right'| 41
+| style='text-align:right'| 482721
+| &nbsp;
+| style='text-align:right'| 2233
+| style='text-align:right'| 37502032
+| 67,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2&position=chrUn_LN609483v1:243-377 chrUn_LN609483v1:243-377]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat2 plot strRat2]
+|-
+| 250
+| 1880
+| style='text-align:center;'| taeGut0
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 597003
+| style='text-align:right'| 49
+| style='text-align:right'| 43955858
+| &nbsp;
+| style='text-align:right'| 3833
+| style='text-align:right'| 2936709220
+| 209,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut0&position=Contig47:5328655-5329073 Contig47:5328655-5329073]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut0 plot taeGut0]
+|-
+| 251
+| 2008
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 602657
+| style='text-align:right'| 49
+| style='text-align:right'| 44658308
+| &nbsp;
+| style='text-align:right'| 3557
+| style='text-align:right'| 2849213000
+| 209,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1&position=chrZ:28813941-28814359 chrZ:28813941-28814359]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut1 plot taeGut1]
+|-
+| 252
+| 2013
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000151805.1/ GCF_000151805.1]
+| PCAP v. 2008
+| style='text-align:right'| 602028
+| style='text-align:right'| 49
+| style='text-align:right'| 44591081
+| &nbsp;
+| style='text-align:right'| 3541
+| style='text-align:right'| 2830875406
+| 209,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2&position=chrZ:28813941-28814359 chrZ:28813941-28814359]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut2 plot taeGut2]
+|-
+| 254
+| 2013
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ GCA_000400755.1]
+| HAPs v. 0.2.2
+| style='text-align:right'| 97724
+| style='text-align:right'| 36
+| style='text-align:right'| 6776388
+| &nbsp;
+| style='text-align:right'| 184
+| style='text-align:right'| 251435705
+| 503,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1&position=KE121297:329-1335 KE121297:329-1335]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=takFla1 plot takFla1]
+|-
+| 255
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1 tauEry1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000709365.1/ GCF_000709365.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 58294
+| style='text-align:right'| 35
+| style='text-align:right'| 2621924
+| &nbsp;
+| style='text-align:right'| 2194
+| style='text-align:right'| 291694166
+| 227,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1&position=JNOY01082112:3268-3722 JNOY01082112:3268-3722]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tauEry1 plot tauEry1]
+|-
+| 256
+| 2004
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1 tetNig1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 132260
+| style='text-align:right'| 38
+| style='text-align:right'| 9178877
+| &nbsp;
+| style='text-align:right'| 3055
+| style='text-align:right'| 661840431
+| 413,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1&position=chrUn_random:43732955-43733781 chrUn_random:43732955-43733781]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig1 plot tetNig1]
+|-
+| 257
+| 2007
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 130250
+| style='text-align:right'| 38
+| style='text-align:right'| 9072570
+| &nbsp;
+| style='text-align:right'| 3013
+| style='text-align:right'| 657839855
+| 413,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2&position=chrUn_random:35610230-35611056 chrUn_random:35610230-35611056]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig2 plot tetNig2]
+|-
+| 258
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1 tinGut1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 43221
+| style='text-align:right'| 38
+| style='text-align:right'| 2742653
+| &nbsp;
+| style='text-align:right'| 279
+| style='text-align:right'| 110109614
+| 416,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1&position=KL400833:106660-107492 KL400833:106660-107492]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut1 plot tinGut1]
+|-
+| 259
+| 2014
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2 tinGut2]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1]
+| SOAPdenovo v. 1.6
+| style='text-align:right'| 43210
+| style='text-align:right'| 38
+| style='text-align:right'| 2741340
+| &nbsp;
+| style='text-align:right'| 279
+| style='text-align:right'| 110101482
+| 416,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2&position=KL895505:106660-107492 KL895505:106660-107492]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut2 plot tinGut2]
+|-
+| 260
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1 triCas1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 78796
+| style='text-align:right'| 41
+| style='text-align:right'| 4117576
+| &nbsp;
+| style='text-align:right'| 794
+| style='text-align:right'| 170185880
+| 307,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1&position=Reptig797:115-729 Reptig797:115-729]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas1 plot triCas1]
+|-
+| 261
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 77889
+| style='text-align:right'| 41
+| style='text-align:right'| 4122780
+| &nbsp;
+| style='text-align:right'| 885
+| style='text-align:right'| 196279053
+| 192,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2&position=singleUn_1374:29986-30370 singleUn_1374:29986-30370]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas2 plot triCas2]
+|-
+| 262
+| 2011
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000181795.1/ GCF_000181795.1]
+| PCAP v. January 12, 2007
 | style='text-align:right'| 11343
 | style='text-align:right'| 54
 | style='text-align:right'| 1176023
 | &nbsp;
 | style='text-align:right'| 4572
 | style='text-align:right'| 74727382
 | 98,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1&position=GL622792v1:5540185-5540381 GL622792v1:5540185-5540381]
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSpi1 plot triSpi1]
 |-
-| 222
+| 263
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1]
 | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_000701005.1/ GCA_000701005.1]
 | SOAPdenovo v. 2
 | style='text-align:right'| 17372
 | style='text-align:right'| 45
 | style='text-align:right'| 1593967
 | &nbsp;
 | style='text-align:right'| 2042.5
 | style='text-align:right'| 75416120
 | 501,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1&position=KL363185v1:221782-222784 KL363185v1:221782-222784]
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSui1 plot triSui1]
 |-
-| 223
+| 264
 | 2014
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1 tytAlb1]
 | style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000687205.1/ GCF_000687205.1]
 | SOAPdenovo v. 1.6
 | style='text-align:right'| 15140
 | style='text-align:right'| 33
 | style='text-align:right'| 776246
+| &nbsp;
+| style='text-align:right'| 81
+| style='text-align:right'| 23744286
+| 199,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1&position=JJRD01024771:5513-5911 JJRD01024771:5513-5911]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tytAlb1 plot tytAlb1]
+|-
+| 265
+| 2004
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1 xenTro1]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 1073717
+| style='text-align:right'| 40
+| style='text-align:right'| 65548900
+| &nbsp;
+| style='text-align:right'| 216
+| style='text-align:right'| 2854287515
+| 347,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1&position=scaffold_3418:6326-7020 scaffold_3418:6326-7020]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro1 plot xenTro1]
+|-
+| 266
+| 2005
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2 xenTro2]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 1034566
+| style='text-align:right'| 40
+| style='text-align:right'| 64677537
+| &nbsp;
+| style='text-align:right'| 219
+| style='text-align:right'| 2820134241
+| 548,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2&position=scaffold_68:2539823-2540919 scaffold_68:2539823-2540919]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro2 plot xenTro2]
+|-
+| 267
+| 2009
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3]
+| style='text-align:center;'| tbd
+| tbd
+| style='text-align:right'| 1034357
+| style='text-align:right'| 40
+| style='text-align:right'| 64662644
+| &nbsp;
+| style='text-align:right'| 219
+| style='text-align:right'| 2819484140
+| 548,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3&position=GL172704:2539823-2540919 GL172704:2539823-2540919]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro3 plot xenTro3]
+|-
+| 268
+| 2012
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004195.2/ GCF_000004195.2]
+| ARACHNE v. 20071016_modified
+| style='text-align:right'| 1100470
+| style='text-align:right'| 39
+| style='text-align:right'| 53428011
+| &nbsp;
+| style='text-align:right'| 229
+| style='text-align:right'| 2808691507
+| 3560,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7&position=KB021656:75384527-75391648 KB021656:75384527-75391648]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro7 plot xenTro7]
+|-
+| 269
+| 2016
+| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9 xenTro9]
+| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000004195.3/ GCF_000004195.3]
+| Meraculous v. May-2013
+| style='text-align:right'| 967829
+| style='text-align:right'| 39
+| style='text-align:right'| 47452193
 | &nbsp;
-| style='text-align:right'| 81
+| style='text-align:right'| 241
-| style='text-align:right'| 23744286
+| style='text-align:right'| 2585384269
-| 199,	1,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1&position=JJRD01024771:5513-5911 JJRD01024771:5513-5911]
+| 3560,	2,	[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9&position=chr6:35780447-35787568 chr6:35780447-35787568]
-| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tytAlb1 plot tytAlb1]
+| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro9 plot xenTro9]
 |-
-| 224
+| 270
 | 2012
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1]
@@ Line 2,831: / Line 3,472: @@
 | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xipMac1 plot xipMac1]
 |-
-| 226
+| 272
 | 2013
 | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1]