Hg38 30-way Genome size statistics: Difference between revisions

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==do not edit, automatically generated table==
==do not edit, automatically generated table==


<TABLE BORDER=1>
{| border='1' style='border-collapse:collapse' class='wikitable sortable'
<TR><TH>order<BR>count/<BR>ftp&nbsp;src</TH>
|+ genome size statistics
  <TH>ucsc<BR>db&nbsp;name/<BR>genome-preview</TH>
! order<br>count<br>ftp&nbsp;src
  <TH>chrom<BR>count</TH>
! ucsc<br>db&nbsp;name/<br>genome-preview
  <TH>total<BR>size</TH>
! chrom<br>count
  <TH>non-N<BR>bases</TH>
! total<br>size
  <TH>N&nbsp;base<BR>count</TH>
! non-N<br>bases
  <TH>%&nbsp;masked</TH>
! N&nbsp;base<br>count
  <TH>common&nbsp;name/<BR>src&nbsp;info</TH>
! %&nbsp;masked
  <TH>coverage</TH>
! common&nbsp;name<br>src&nbsp;info
  <TH>N50<BR>chrom.sizes</TH>
! coverage<br>X
  <TH>alignment&nbsp;type</TH>
! N50<br>chrom.sizes
  <TH>%&nbsp;of&nbsp;hg38<BR>matched<BR>(chainLink&nbsp;table)</TH>
! alignment&nbsp;type
  <TH>chain<BR>minScore</TH>
! %&nbsp;of&nbsp;hg38<br>matched<br>(chainLink&nbsp;table)
  <TH>chain<BR>linearGap</TH>
! chain<br>minScore
<TR>
! chain<br>linearGap
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ 01]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]</TH>
|-
<TH ALIGN=RIGHT>455</TH>
! [http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ 01]
  <TD ALIGN=RIGHT>3,209,286,105</TD><TD ALIGN=RIGHT>3,049,315,783</TD>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]
  <TD ALIGN=RIGHT>159,970,322</TD><TD ALIGN=RIGHT>%&nbsp;52.10</TD>
! 455
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Human]</TD><TH ALIGN=CENTER>20X</TH>
| 3,209,286,105
<TH ALIGN=CENTER>145138636</TH>
| 3,049,315,783
  <TH ALIGN=CENTER>N/A</TH><TD ALIGN=RIGHT>N/A</TD>
| 159,970,322
<TD ALIGN=RIGHT>3000</TD>
| %&nbsp;52.10
  <TD ALIGN=CENTER>medium</TD></TR>
| [http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Human]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/GCA_000001895.4/ 02]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro5 panTro5]</TH>
! 20
<TH ALIGN=RIGHT>44,449</TH>
! 145138636
  <TD ALIGN=RIGHT>3,231,170,666</TD><TD ALIGN=RIGHT>3,132,619,616</TD>
! N/A
  <TD ALIGN=RIGHT>98,551,050</TD><TD ALIGN=RIGHT>%&nbsp;52.72</TD>
| N/A
  <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ04 Chimp]</TD><TH ALIGN=CENTER>6X</TH>
| 3000
<TH ALIGN=CENTER>135926727</TH>
| medium
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>95.355%</TD>
|-
<TD ALIGN=RIGHT>5000</TD>
! [https://www.ncbi.nlm.nih.gov/assembly/GCA_000001895.4/ 02]
  <TD ALIGN=CENTER>medium</TD></TR>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=panTro5 panTro5]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/474211 03]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan2 panPan2]</TH>
! 44,449
<TH ALIGN=RIGHT>10,274</TH>
| 3,231,170,666
  <TD ALIGN=RIGHT>3,286,643,896</TD><TD ALIGN=RIGHT>2,725,890,006</TD>
| 3,132,619,616
  <TD ALIGN=RIGHT>560,753,890</TD><TD ALIGN=RIGHT>%&nbsp;50.59</TD>
| 98,551,050
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Pan_paniscus/all_assembly_versions/GCF_000258655.2_panpan1.1/ Bonobo]</TD><TH ALIGN=CENTER>26X</TH>
| %&nbsp;52.72
<TH ALIGN=CENTER>144709823</TH>
| [https://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ04 Chimp]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>92.685%</TD>
! 6
<TD ALIGN=RIGHT>3000</TD>
! 135926727
  <TD ALIGN=CENTER>medium</TD></TR>
! SyntenicNet
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/705391 04]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5]</TH>
| 95.355%
<TH ALIGN=RIGHT>15,998</TH>
| 5000
  <TD ALIGN=RIGHT>3,080,431,298</TD><TD ALIGN=RIGHT>3,080,431,298</TD>
| medium
  <TD ALIGN=RIGHT>0</TD><TD ALIGN=RIGHT>%&nbsp;50.02</TD>
|-
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Gorilla_gorilla/all_assembly_versions/GCA_900006655.1_GSMRT3/ Gorilla]</TD><TH ALIGN=CENTER>71X</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/474211 03]
<TH ALIGN=CENTER>10016017</TH>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=panPan2 panPan2]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>94.691%</TD>
! 10,274
<TD ALIGN=RIGHT>3000</TD>
| 3,286,643,896
  <TD ALIGN=CENTER>medium</TD></TR>
| 2,725,890,006
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/pongo_abelii/ 05]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]</TH>
| 560,753,890
<TH ALIGN=RIGHT>55</TH>
| %&nbsp;50.59
  <TD ALIGN=RIGHT>3,446,771,396</TD><TD ALIGN=RIGHT>3,093,543,172</TD>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Pan_paniscus/all_assembly_versions/GCF_000258655.2_panpan1.1/ Bonobo]
  <TD ALIGN=RIGHT>353,228,224</TD><TD ALIGN=RIGHT>%&nbsp;50.89</TD>
! 26
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Orangutan]</TD><TH ALIGN=CENTER>6X</TH>
! 144709823
<TH ALIGN=CENTER>135191526</TH>
! SyntenicNet
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>89.187%</TD>
| 92.685%
<TD ALIGN=RIGHT>5000</TD>
| 3000
  <TD ALIGN=CENTER>medium</TD></TR>
| medium
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ 06]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]</TH>
|-
<TH ALIGN=RIGHT>17,492</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/705391 04]
  <TD ALIGN=RIGHT>2,962,077,449</TD><TD ALIGN=RIGHT>2,756,609,047</TD>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5]
  <TD ALIGN=RIGHT>205,468,402</TD><TD ALIGN=RIGHT>%&nbsp;51.14</TD>
! 15,998
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Gibbon]</TD><TH ALIGN=CENTER>5.6X</TH>
| 3,080,431,298
<TH ALIGN=CENTER>117381234</TH>
| 3,080,431,298
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>86.379%</TD>
| 0
<TD ALIGN=RIGHT>3000</TD>
| %&nbsp;50.02
  <TD ALIGN=CENTER>medium</TD></TR>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Gorilla_gorilla/all_assembly_versions/GCA_900006655.1_GSMRT3/ Gorilla]
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA241312 07]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1]</TH>
! 71
<TH ALIGN=RIGHT>319,550</TH>
! 10016017
  <TD ALIGN=RIGHT>3,011,982,740</TD><TD ALIGN=RIGHT>2,397,109,760</TD>
! SyntenicNet
  <TD ALIGN=RIGHT>614,872,980</TD><TD ALIGN=RIGHT>%&nbsp;46.33</TD>
| 94.691%
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JMHX01 Proboscis monkey]</TD><TH ALIGN=CENTER>290X</TH>
| 3000
<TH ALIGN=CENTER>137426304</TH>
| medium
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>74.541%</TD>
|-
<TD ALIGN=RIGHT>3000</TD>
! [http://genome.wustl.edu/genomes/view/pongo_abelii/ 05]
  <TD ALIGN=CENTER>medium</TD></TR>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/777531 08]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1 rhiBie1]</TH>
! 55
<TH ALIGN=RIGHT>105,031</TH>
| 3,446,771,396
  <TD ALIGN=RIGHT>2,977,074,741</TD><TD ALIGN=RIGHT>2,801,879,982</TD>
| 3,093,543,172
  <TD ALIGN=RIGHT>175,194,759</TD><TD ALIGN=RIGHT>%&nbsp;50.27</TD>
| 353,228,224
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Rhinopithecus_bieti/all_assembly_versions/GCF_001698545.1_ASM169854v1/ Black snub-nosed monkey]</TD><TH ALIGN=CENTER>76.6X</TH>
| %&nbsp;50.89
<TH ALIGN=CENTER>2225337</TH>
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABGA00 Orangutan]
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>83.065%</TD>
! 6
<TD ALIGN=RIGHT>5000</TD>
! 135191526
  <TD ALIGN=CENTER>medium</TD></TR>
! RecipBest
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA266995 09]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1]</TH>
| 89.187%
<TH ALIGN=RIGHT>135,512</TH>
| 5000
  <TD ALIGN=RIGHT>2,899,552,139</TD><TD ALIGN=RIGHT>2,856,044,136</TD>
| medium
  <TD ALIGN=RIGHT>43,508,003</TD><TD ALIGN=RIGHT>%&nbsp;51.07</TD>
|-
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JABR01 Golden snub-nosed monkey]</TD><TH ALIGN=CENTER>53.7X</TH>
! [http://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ 06]
<TH ALIGN=CENTER>1549224</TH>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3]
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>85.109%</TD>
! 17,492
<TD ALIGN=RIGHT>3000</TD>
| 2,962,077,449
  <TD ALIGN=CENTER>medium</TD></TR>
| 2,756,609,047
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/311101 10]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=colAng1 colAng1]</TH>
| 205,468,402
<TH ALIGN=RIGHT>13,124</TH>
| %&nbsp;51.14
  <TD ALIGN=RIGHT>2,970,124,662</TD><TD ALIGN=RIGHT>2,679,973,136</TD>
| [ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Nomascus_leucogenys/Nleu_3.0/ Gibbon]
  <TD ALIGN=RIGHT>290,151,526</TD><TD ALIGN=RIGHT>%&nbsp;49.72</TD>
! 5.6
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Colobus_angolensis/all_assembly_versions/GCF_000951035.1_Cang.pa_1.0/ Angolan colobus]</TD><TH ALIGN=CENTER>86.8X</TH>
! 117381234
<TH ALIGN=CENTER>7840981</TH>
! SyntenicNet
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>81.641%</TD>
| 86.379%
<TD ALIGN=RIGHT>5000</TD>
| 3000
  <TD ALIGN=CENTER>medium</TD></TR>
| medium
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 11]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]</TH>
|-
<TH ALIGN=RIGHT>7,601</TH>
! [http://www.ncbi.nlm.nih.gov/bioproject/PRJNA241312 07]
  <TD ALIGN=RIGHT>2,946,843,737</TD><TD ALIGN=RIGHT>2,803,866,385</TD>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1]
  <TD ALIGN=RIGHT>142,977,352</TD><TD ALIGN=RIGHT>%&nbsp;50.11</TD>
! 319,550
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Crab-eating macaque]</TD><TH ALIGN=CENTER>68X</TH>
| 3,011,982,740
<TH ALIGN=CENTER>152835861</TH>
| 2,397,109,760
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>85.675%</TD>
| 614,872,980
<TD ALIGN=RIGHT>3000</TD>
| %&nbsp;46.33
  <TD ALIGN=CENTER>medium</TD></TR>
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JMHX01 Proboscis monkey]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/GCF_000772875.2/ 12]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8]</TH>
! 290
<TH ALIGN=RIGHT>284,728</TH>
! 137426304
  <TD ALIGN=RIGHT>3,236,224,332</TD><TD ALIGN=RIGHT>3,142,091,753</TD>
! RecipBest
  <TD ALIGN=RIGHT>94,132,579</TD><TD ALIGN=RIGHT>%&nbsp;54.33</TD>
| 74.541%
  <TD ALIGN=CENTER>[https://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JSUE03 Rhesus]</TD><TH ALIGN=CENTER>47.4X</TH>
| 3000
<TH ALIGN=CENTER>144306982</TH>
| medium
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>84.506%</TD>
|-
<TD ALIGN=RIGHT>5000</TD>
! [https://www.ncbi.nlm.nih.gov/assembly/777531 08]
  <TD ALIGN=CENTER>medium</TD></TR>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1 rhiBie1]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/399268 13]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu3 papAnu3]</TH>
! 105,031
<TH ALIGN=RIGHT>63,251</TH>
| 2,977,074,741
  <TD ALIGN=RIGHT>2,948,397,226</TD><TD ALIGN=RIGHT>2,893,266,807</TD>
| 2,801,879,982
  <TD ALIGN=RIGHT>55,130,419</TD><TD ALIGN=RIGHT>%&nbsp;52.40</TD>
| 175,194,759
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Papio_anubis/all_assembly_versions/GCF_000264685.2_Panu_2.0/ Baboon]</TD><TH ALIGN=CENTER>85X</TH>
| %&nbsp;50.27
<TH ALIGN=CENTER>139646187</TH>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Rhinopithecus_bieti/all_assembly_versions/GCF_001698545.1_ASM169854v1/ Black snub-nosed monkey]
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>86.336%</TD>
! 76.6
<TD ALIGN=RIGHT>3000</TD>
! 2225337
  <TD ALIGN=CENTER>medium</TD></TR>
! RecipBest
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/313501 14]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1]</TH>
| 83.065%
<TH ALIGN=RIGHT>9,734</TH>
| 5000
  <TD ALIGN=RIGHT>2,948,720,071</TD><TD ALIGN=RIGHT>2,838,503,040</TD>
| medium
  <TD ALIGN=RIGHT>110,217,031</TD><TD ALIGN=RIGHT>%&nbsp;50.07</TD>
|-
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Macaca_nemestrina/all_assembly_versions/GCF_000956065.1_Mnem_1.0/ Pig-tailed macaque]</TD><TH ALIGN=CENTER>113.1X</TH>
! [http://www.ncbi.nlm.nih.gov/bioproject/PRJNA266995 09]
<TH ALIGN=CENTER>15219753</TH>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>83.524%</TD>
! 135,512
<TD ALIGN=RIGHT>5000</TD>
| 2,899,552,139
  <TD ALIGN=CENTER>medium</TD></TR>
| 2,856,044,136
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/313491 15]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cerAty1 cerAty1]</TH>
| 43,508,003
<TH ALIGN=RIGHT>11,434</TH>
| %&nbsp;51.07
  <TD ALIGN=RIGHT>2,848,262,899</TD><TD ALIGN=RIGHT>2,787,289,385</TD>
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JABR01 Golden snub-nosed monkey]
  <TD ALIGN=RIGHT>60,973,514</TD><TD ALIGN=RIGHT>%&nbsp;49.92</TD>
! 53.7
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Cercocebus_atys/all_assembly_versions/GCF_000955945.1_Caty_1.0/ Sooty mangabey]</TD><TH ALIGN=CENTER>192X</TH>
! 1549224
<TH ALIGN=CENTER>12849131</TH>
! RecipBest
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>83.847%</TD>
| 85.109%
<TD ALIGN=RIGHT>5000</TD>
| 3000
  <TD ALIGN=CENTER>medium</TD></TR>
| medium
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/67945 16]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH>
|-
<TH ALIGN=RIGHT>2,685</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/311101 10]
  <TD ALIGN=RIGHT>2,608,572,064</TD><TD ALIGN=RIGHT>2,477,131,095</TD>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=colAng1 colAng1]
  <TD ALIGN=RIGHT>131,440,969</TD><TD ALIGN=RIGHT>%&nbsp;46.69</TD>
! 13,124
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]</TD><TH ALIGN=CENTER>80X</TH>
| 2,970,124,662
<TH ALIGN=CENTER>18744880</TH>
| 2,679,973,136
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>70.565%</TD>
| 290,151,526
<TD ALIGN=RIGHT>3000</TD>
| %&nbsp;49.72
  <TD ALIGN=CENTER>medium</TD></TR>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Colobus_angolensis/all_assembly_versions/GCF_000951035.1_Cang.pa_1.0/ Angolan colobus]
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 17]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]</TH>
! 86.8
<TH ALIGN=RIGHT>2,004</TH>
! 7840981
  <TD ALIGN=RIGHT>2,789,656,328</TD><TD ALIGN=RIGHT>2,752,000,999</TD>
! SyntenicNet
  <TD ALIGN=RIGHT>37,655,329</TD><TD ALIGN=RIGHT>%&nbsp;48.77</TD>
| 81.641%
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Green monkey]</TD><TH ALIGN=CENTER>95X</TH>
| 5000
<TH ALIGN=CENTER>101219884</TH>
| medium
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>84.393%</TD>
|-
<TD ALIGN=RIGHT>5000</TD>
! [http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 11]
  <TD ALIGN=CENTER>medium</TD></TR>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/311021 18]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=manLeu1 manLeu1]</TH>
! 7,601
<TH ALIGN=RIGHT>12,822</TH>
| 2,946,843,737
  <TD ALIGN=RIGHT>3,062,009,387</TD><TD ALIGN=RIGHT>2,721,424,085</TD>
| 2,803,866,385
  <TD ALIGN=RIGHT>340,585,302</TD><TD ALIGN=RIGHT>%&nbsp;49.47</TD>
| 142,977,352
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Mandrillus_leucophaeus/all_assembly_versions/GCF_000951045.1_Mleu.le_1.0/ Drill]</TD><TH ALIGN=CENTER>117.2X</TH>
| %&nbsp;50.11
<TH ALIGN=CENTER>3186748</TH>
| [ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Crab-eating macaque]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>82.498%</TD>
! 68
<TD ALIGN=RIGHT>5000</TD>
! 152835861
  <TD ALIGN=CENTER>medium</TD></TR>
! SyntenicNet
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/1130511 19]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=aotNan1 aotNan1]</TH>
| 85.675%
<TH ALIGN=RIGHT>28,922</TH>
| 3000
  <TD ALIGN=RIGHT>2,861,684,817</TD><TD ALIGN=RIGHT>2,714,439,489</TD>
| medium
  <TD ALIGN=RIGHT>147,245,328</TD><TD ALIGN=RIGHT>%&nbsp;47.38</TD>
|-
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Aotus_nancymaae/all_assembly_versions/GCF_000952055.2_Anan_2.0/ Ma's night monkey]</TD><TH ALIGN=CENTER>132.4X</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/GCF_000772875.2/ 12]
<TH ALIGN=CENTER>8268663</TH>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>70.629%</TD>
! 284,728
<TD ALIGN=RIGHT>5000</TD>
| 3,236,224,332
  <TD ALIGN=CENTER>medium</TD></TR>
| 3,142,091,753
<TR><TH ALIGN=RIGHT>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 20]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH>
| 94,132,579
<TH ALIGN=RIGHT>14,205</TH>
| %&nbsp;54.33
  <TD ALIGN=RIGHT>2,914,958,544</TD><TD ALIGN=RIGHT>2,752,505,800</TD>
| [https://www.ncbi.nlm.nih.gov/Traces/wgs/?val=JSUE03 Rhesus]
  <TD ALIGN=RIGHT>162,452,744</TD><TD ALIGN=RIGHT>%&nbsp;47.71</TD>
! 47.4
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Marmoset]</TD><TH ALIGN=CENTER>6X</TH>
! 144306982
<TH ALIGN=CENTER>132174527</TH>
! SyntenicNet
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>71.709%</TD>
| 84.506%
<TD ALIGN=RIGHT>3000</TD>
| 5000
  <TD ALIGN=CENTER>medium</TD></TR>
| medium
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/716501 21]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cebCap1 cebCap1]</TH>
|-
<TH ALIGN=RIGHT>7,156</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/399268 13]
  <TD ALIGN=RIGHT>2,717,703,182</TD><TD ALIGN=RIGHT>2,610,499,094</TD>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=papAnu3 papAnu3]
  <TD ALIGN=RIGHT>107,204,088</TD><TD ALIGN=RIGHT>%&nbsp;47.29</TD>
! 63,251
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Cebus_capucinus/all_assembly_versions/GCF_001604975.1_Cebus_imitator-1.0/ White-faced sapajou]</TD><TH ALIGN=CENTER>81X</TH>
| 2,948,397,226
<TH ALIGN=CENTER>5274112</TH>
| 2,893,266,807
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>70.683%</TD>
| 55,130,419
<TD ALIGN=RIGHT>5000</TD>
| %&nbsp;52.40
  <TD ALIGN=CENTER>medium</TD></TR>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Papio_anubis/all_assembly_versions/GCF_000264685.2_Panu_2.0/ Baboon]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/469021 22]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eulFla1 eulFla1]</TH>
! 85
<TH ALIGN=RIGHT>38,366</TH>
! 139646187
  <TD ALIGN=RIGHT>2,115,567,618</TD><TD ALIGN=RIGHT>2,094,103,399</TD>
! RecipBest
  <TD ALIGN=RIGHT>21,464,219</TD><TD ALIGN=RIGHT>%&nbsp;39.60</TD>
| 86.336%
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Eulemur_flavifrons/all_assembly_versions/GCA_001262665.1_Eflavifronsk33QCA/ Sclater's lemur]</TD><TH ALIGN=CENTER>52X</TH>
| 3000
<TH ALIGN=CENTER>413352</TH>
| medium
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>33.326%</TD>
|-
<TD ALIGN=RIGHT>5000</TD>
! [https://www.ncbi.nlm.nih.gov/assembly/313501 14]
  <TD ALIGN=CENTER>medium</TD></TR>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1]
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/469011/ 23]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eulMac1 eulMac1]</TH>
! 9,734
<TH ALIGN=RIGHT>26,772</TH>
| 2,948,720,071
  <TD ALIGN=RIGHT>2,119,875,225</TD><TD ALIGN=RIGHT>2,101,039,320</TD>
| 2,838,503,040
  <TD ALIGN=RIGHT>18,835,905</TD><TD ALIGN=RIGHT>%&nbsp;39.43</TD>
| 110,217,031
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Eulemur_macaco/all_assembly_versions/GCA_001262655.1_Emacaco_refEf_BWA_oneround/ Black lemur]</TD><TH ALIGN=CENTER>21X</TH>
| %&nbsp;50.07
<TH ALIGN=CENTER>405987</TH>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Macaca_nemestrina/all_assembly_versions/GCF_000956065.1_Mnem_1.0/ Pig-tailed macaque]
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>33.708%</TD>
! 113.1
<TD ALIGN=RIGHT>5000</TD>
! 15219753
  <TD ALIGN=CENTER>medium</TD></TR>
! SyntenicNet
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA20339 24]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2]</TH>
| 83.524%
<TH ALIGN=RIGHT>337,189</TH>
| 5000
  <TD ALIGN=RIGHT>3,453,864,774</TD><TD ALIGN=RIGHT>3,405,755,564</TD>
| medium
  <TD ALIGN=RIGHT>48,109,210</TD><TD ALIGN=RIGHT>%&nbsp;47.85</TD>
|-
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT02 Tarsier]</TD><TH ALIGN=CENTER>48X</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/313491 15]
<TH ALIGN=CENTER>401181</TH>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=cerAty1 cerAty1]
  <TH ALIGN=CENTER>RecipBest</TH><TD ALIGN=RIGHT>56.022%</TD>
! 11,434
<TD ALIGN=RIGHT>3000</TD>
| 2,848,262,899
  <TD ALIGN=CENTER>medium</TD></TR>
| 2,787,289,385
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/315741 25]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=proCoq1 proCoq1]</TH>
| 60,973,514
<TH ALIGN=RIGHT>22,539</TH>
| %&nbsp;49.92
  <TD ALIGN=RIGHT>2,798,152,141</TD><TD ALIGN=RIGHT>2,083,764,525</TD>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Cercocebus_atys/all_assembly_versions/GCF_000955945.1_Caty_1.0/ Sooty mangabey]
  <TD ALIGN=RIGHT>714,387,616</TD><TD ALIGN=RIGHT>%&nbsp;39.39</TD>
! 192
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Propithecus_coquereli/all_assembly_versions/GCF_000956105.1_Pcoq_1.0/ Coquerel's sifaka]</TD><TH ALIGN=CENTER>104.7X</TH>
! 12849131
<TH ALIGN=CENTER>5604909</TH>
! SyntenicNet
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>32.467%</TD>
| 83.847%
<TD ALIGN=RIGHT>5000</TD>
| 5000
  <TD ALIGN=CENTER>medium</TD></TR>
| medium
<TR><TH ALIGN=RIGHT>[https://www.ncbi.nlm.nih.gov/assembly/998221 26]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3]</TH>
|-
<TH ALIGN=RIGHT>7,678</TH>
! [http://www.ncbi.nlm.nih.gov/bioproject/67945 16]
  <TD ALIGN=RIGHT>2,487,409,138</TD><TD ALIGN=RIGHT>2,386,321,897</TD>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]
  <TD ALIGN=RIGHT>101,087,241</TD><TD ALIGN=RIGHT>%&nbsp;41.27</TD>
! 2,685
  <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Microcebus_murinus/all_assembly_versions/GCF_000165445.2_Mmur_3.0/ Mouse lemur]</TD><TH ALIGN=CENTER>221.6X</TH>
| 2,608,572,064
<TH ALIGN=CENTER>108171978</TH>
| 2,477,131,095
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>29.728%</TD>
| 131,440,969
<TD ALIGN=RIGHT>3000</TD>
| %&nbsp;46.69
  <TD ALIGN=CENTER>medium</TD></TR>
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Squirrel monkey]
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 27]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
! 80
<TH ALIGN=RIGHT>7,793</TH>
! 18744880
  <TD ALIGN=RIGHT>2,519,724,550</TD><TD ALIGN=RIGHT>2,359,530,453</TD>
! SyntenicNet
  <TD ALIGN=RIGHT>160,194,097</TD><TD ALIGN=RIGHT>%&nbsp;39.51</TD>
| 70.565%
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Bushbaby]</TD><TH ALIGN=CENTER>137X</TH>
| 3000
<TH ALIGN=CENTER>13852661</TH>
| medium
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>53.196%</TD>
|-
<TD ALIGN=RIGHT>3000</TD>
! [http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 17]
  <TD ALIGN=CENTER>medium</TD></TR>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 28]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
! 2,004
<TH ALIGN=RIGHT>3,268</TH>
| 2,789,656,328
  <TD ALIGN=RIGHT>2,410,976,875</TD><TD ALIGN=RIGHT>2,392,715,236</TD>
| 2,752,000,999
  <TD ALIGN=RIGHT>18,261,639</TD><TD ALIGN=RIGHT>%&nbsp;43.01</TD>
| 37,655,329
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Dog]</TD><TH ALIGN=CENTER>7.6X</TH>
| %&nbsp;48.77
<TH ALIGN=CENTER>63241923</TH>
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Green monkey]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>50.395%</TD>
! 95
<TD ALIGN=RIGHT>3000</TD>
! 101219884
  <TD ALIGN=CENTER>medium</TD></TR>
! SyntenicNet
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/12594 29]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH>
| 84.393%
<TH ALIGN=RIGHT>46,559</TH>
| 5000
  <TD ALIGN=RIGHT>3,631,522,711</TD><TD ALIGN=RIGHT>3,299,882,028</TD>
| medium
  <TD ALIGN=RIGHT>331,640,683</TD><TD ALIGN=RIGHT>%&nbsp;49.28</TD>
|-
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Armadillo]</TD><TH ALIGN=CENTER>6X</TH>
! [https://www.ncbi.nlm.nih.gov/assembly/311021 18]
<TH ALIGN=CENTER>1687935</TH>
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=manLeu1 manLeu1]
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>45.349%</TD>
! 12,822
<TD ALIGN=RIGHT>3000</TD>
| 3,062,009,387
  <TD ALIGN=CENTER>medium</TD></TR>
| 2,721,424,085
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 30]</TH><TH ALIGN=RIGHT>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH>
| 340,585,302
<TH ALIGN=RIGHT>66</TH>
| %&nbsp;49.47
  <TD ALIGN=RIGHT>2,730,871,774</TD><TD ALIGN=RIGHT>2,652,783,500</TD>
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Mandrillus_leucophaeus/all_assembly_versions/GCF_000951045.1_Mleu.le_1.0/ Drill]
  <TD ALIGN=RIGHT>78,088,274</TD><TD ALIGN=RIGHT>%&nbsp;45.18</TD>
! 117.2
  <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mouse]</TD><TH ALIGN=CENTER>20X</TH>
! 3186748
<TH ALIGN=CENTER>130694993</TH>
! SyntenicNet
  <TH ALIGN=CENTER>SyntenicNet</TH><TD ALIGN=RIGHT>31.653%</TD>
| 82.498%
<TD ALIGN=RIGHT>3000</TD>
| 5000
  <TD ALIGN=CENTER>medium</TD></TR>
| medium
</TABLE>
|-
! [https://www.ncbi.nlm.nih.gov/assembly/1130511 19]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=aotNan1 aotNan1]
! 28,922
| 2,861,684,817
| 2,714,439,489
| 147,245,328
| %&nbsp;47.38
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Aotus_nancymaae/all_assembly_versions/GCF_000952055.2_Anan_2.0/ Ma's night monkey]
! 132.4
! 8268663
! SyntenicNet
| 70.629%
| 5000
| medium
|-
! [http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 20]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]
! 14,205
| 2,914,958,544
| 2,752,505,800
| 162,452,744
| %&nbsp;47.71
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Marmoset]
! 6
! 132174527
! SyntenicNet
| 71.709%
| 3000
| medium
|-
! [https://www.ncbi.nlm.nih.gov/assembly/716501 21]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=cebCap1 cebCap1]
! 7,156
| 2,717,703,182
| 2,610,499,094
| 107,204,088
| %&nbsp;47.29
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Cebus_capucinus/all_assembly_versions/GCF_001604975.1_Cebus_imitator-1.0/ White-faced sapajou]
! 81
! 5274112
! SyntenicNet
| 70.683%
| 5000
| medium
|-
! [https://www.ncbi.nlm.nih.gov/assembly/469021 22]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=eulFla1 eulFla1]
! 38,366
| 2,115,567,618
| 2,094,103,399
| 21,464,219
| %&nbsp;39.60
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Eulemur_flavifrons/all_assembly_versions/GCA_001262665.1_Eflavifronsk33QCA/ Sclater's lemur]
! 52
! 413352
! RecipBest
| 33.326%
| 5000
| medium
|-
! [https://www.ncbi.nlm.nih.gov/assembly/469011/ 23]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=eulMac1 eulMac1]
! 26,772
| 2,119,875,225
| 2,101,039,320
| 18,835,905
| %&nbsp;39.43
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Eulemur_macaco/all_assembly_versions/GCA_001262655.1_Emacaco_refEf_BWA_oneround/ Black lemur]
! 21
! 405987
! RecipBest
| 33.708%
| 5000
| medium
|-
! [http://www.ncbi.nlm.nih.gov/bioproject/PRJNA20339 24]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2]
! 337,189
| 3,453,864,774
| 3,405,755,564
| 48,109,210
| %&nbsp;47.85
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRT02 Tarsier]
! 48
! 401181
! RecipBest
| 56.022%
| 3000
| medium
|-
! [https://www.ncbi.nlm.nih.gov/assembly/315741 25]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=proCoq1 proCoq1]
! 22,539
| 2,798,152,141
| 2,083,764,525
| 714,387,616
| %&nbsp;39.39
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Propithecus_coquereli/all_assembly_versions/GCF_000956105.1_Pcoq_1.0/ Coquerel's sifaka]
! 104.7
! 5604909
! SyntenicNet
| 32.467%
| 5000
| medium
|-
! [https://www.ncbi.nlm.nih.gov/assembly/998221 26]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3]
! 7,678
| 2,487,409,138
| 2,386,321,897
| 101,087,241
| %&nbsp;41.27
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Microcebus_murinus/all_assembly_versions/GCF_000165445.2_Mmur_3.0/ Mouse lemur]
! 221.6
! 108171978
! SyntenicNet
| 29.728%
| 3000
| medium
|-
! [http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 27]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]
! 7,793
| 2,519,724,550
| 2,359,530,453
| 160,194,097
| %&nbsp;39.51
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Bushbaby]
! 137
! 13852661
! SyntenicNet
| 53.196%
| 3000
| medium
|-
! [http://www.ncbi.nlm.nih.gov/genome/85 28]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]
! 3,268
| 2,410,976,875
| 2,392,715,236
| 18,261,639
| %&nbsp;43.01
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Dog]
! 7.6
! 63241923
! SyntenicNet
| 50.395%
| 3000
| medium
|-
! [http://www.ncbi.nlm.nih.gov/bioproject/12594 29]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]
! 46,559
| 3,631,522,711
| 3,299,882,028
| 331,640,683
| %&nbsp;49.28
| [http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Armadillo]
! 6
! 1687935
! SyntenicNet
| 45.349%
| 3000
| medium
|-
! [http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 30]
! [http://genome-preview.soe.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]
! 66
| 2,730,871,774
| 2,652,783,500
| 78,088,274
| %&nbsp;45.18
| [http://www.ncbi.nlm.nih.gov/bioproject/51977 Mouse]
! 20
! 130694993
! SyntenicNet
| 31.653%
| 3000
| medium
|}

Latest revision as of 00:04, 7 November 2017

see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

genome size statistics
order
count
ftp src 		ucsc
db name/
genome-preview 		chrom
count 		total
size 		non-N
bases 		N base
count 		% masked common name
src info 		coverage
X 		N50
chrom.sizes 		alignment type % of hg38
matched
(chainLink table) 		chain
minScore 		chain
linearGap
01 hg38 455 3,209,286,105 3,049,315,783 159,970,322 % 52.10 Human 20 145138636 N/A N/A 3000 medium
02 panTro5 44,449 3,231,170,666 3,132,619,616 98,551,050 % 52.72 Chimp 6 135926727 SyntenicNet 95.355% 5000 medium
03 panPan2 10,274 3,286,643,896 2,725,890,006 560,753,890 % 50.59 Bonobo 26 144709823 SyntenicNet 92.685% 3000 medium
04 gorGor5 15,998 3,080,431,298 3,080,431,298 0 % 50.02 Gorilla 71 10016017 SyntenicNet 94.691% 3000 medium
05 ponAbe2 55 3,446,771,396 3,093,543,172 353,228,224 % 50.89 Orangutan 6 135191526 RecipBest 89.187% 5000 medium
06 nomLeu3 17,492 2,962,077,449 2,756,609,047 205,468,402 % 51.14 Gibbon 5.6 117381234 SyntenicNet 86.379% 3000 medium
07 nasLar1 319,550 3,011,982,740 2,397,109,760 614,872,980 % 46.33 Proboscis monkey 290 137426304 RecipBest 74.541% 3000 medium
08 rhiBie1 105,031 2,977,074,741 2,801,879,982 175,194,759 % 50.27 Black snub-nosed monkey 76.6 2225337 RecipBest 83.065% 5000 medium
09 rhiRox1 135,512 2,899,552,139 2,856,044,136 43,508,003 % 51.07 Golden snub-nosed monkey 53.7 1549224 RecipBest 85.109% 3000 medium
10 colAng1 13,124 2,970,124,662 2,679,973,136 290,151,526 % 49.72 Angolan colobus 86.8 7840981 SyntenicNet 81.641% 5000 medium
11 macFas5 7,601 2,946,843,737 2,803,866,385 142,977,352 % 50.11 Crab-eating macaque 68 152835861 SyntenicNet 85.675% 3000 medium
12 rheMac8 284,728 3,236,224,332 3,142,091,753 94,132,579 % 54.33 Rhesus 47.4 144306982 SyntenicNet 84.506% 5000 medium
13 papAnu3 63,251 2,948,397,226 2,893,266,807 55,130,419 % 52.40 Baboon 85 139646187 RecipBest 86.336% 3000 medium
14 macNem1 9,734 2,948,720,071 2,838,503,040 110,217,031 % 50.07 Pig-tailed macaque 113.1 15219753 SyntenicNet 83.524% 5000 medium
15 cerAty1 11,434 2,848,262,899 2,787,289,385 60,973,514 % 49.92 Sooty mangabey 192 12849131 SyntenicNet 83.847% 5000 medium
16 saiBol1 2,685 2,608,572,064 2,477,131,095 131,440,969 % 46.69 Squirrel monkey 80 18744880 SyntenicNet 70.565% 3000 medium
17 chlSab2 2,004 2,789,656,328 2,752,000,999 37,655,329 % 48.77 Green monkey 95 101219884 SyntenicNet 84.393% 5000 medium
18 manLeu1 12,822 3,062,009,387 2,721,424,085 340,585,302 % 49.47 Drill 117.2 3186748 SyntenicNet 82.498% 5000 medium
19 aotNan1 28,922 2,861,684,817 2,714,439,489 147,245,328 % 47.38 Ma's night monkey 132.4 8268663 SyntenicNet 70.629% 5000 medium
20 calJac3 14,205 2,914,958,544 2,752,505,800 162,452,744 % 47.71 Marmoset 6 132174527 SyntenicNet 71.709% 3000 medium
21 cebCap1 7,156 2,717,703,182 2,610,499,094 107,204,088 % 47.29 White-faced sapajou 81 5274112 SyntenicNet 70.683% 5000 medium
22 eulFla1 38,366 2,115,567,618 2,094,103,399 21,464,219 % 39.60 Sclater's lemur 52 413352 RecipBest 33.326% 5000 medium
23 eulMac1 26,772 2,119,875,225 2,101,039,320 18,835,905 % 39.43 Black lemur 21 405987 RecipBest 33.708% 5000 medium
24 tarSyr2 337,189 3,453,864,774 3,405,755,564 48,109,210 % 47.85 Tarsier 48 401181 RecipBest 56.022% 3000 medium
25 proCoq1 22,539 2,798,152,141 2,083,764,525 714,387,616 % 39.39 Coquerel's sifaka 104.7 5604909 SyntenicNet 32.467% 5000 medium
26 micMur3 7,678 2,487,409,138 2,386,321,897 101,087,241 % 41.27 Mouse lemur 221.6 108171978 SyntenicNet 29.728% 3000 medium
27 otoGar3 7,793 2,519,724,550 2,359,530,453 160,194,097 % 39.51 Bushbaby 137 13852661 SyntenicNet 53.196% 3000 medium
28 canFam3 3,268 2,410,976,875 2,392,715,236 18,261,639 % 43.01 Dog 7.6 63241923 SyntenicNet 50.395% 3000 medium
29 dasNov3 46,559 3,631,522,711 3,299,882,028 331,640,683 % 49.28 Armadillo 6 1687935 SyntenicNet 45.349% 3000 medium
30 mm10 66 2,730,871,774 2,652,783,500 78,088,274 % 45.18 Mouse 20 130694993 SyntenicNet 31.653% 3000 medium
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