TandemDups: Difference between revisions
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== methods == | |||
These are measurements of identical paired sequences with a | These are measurements of identical paired sequences with a | ||
separation between the pairs of at least one nucleotide. | separation between the pairs of at least one nucleotide. | ||
Line 60: | Line 60: | ||
! item | ! item | ||
total | total | ||
! | |||
! gap | ! gap | ||
median | median | ||
Line 71: | Line 71: | ||
|- | |- | ||
| 001 | | 001 | ||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ WSB_EiJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624835.1/ GCA_001624835.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 368254 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 19384243 | |||
| | |||
| style='text-align:right'| 3183 | |||
| style='text-align:right'| 2181662749 | |||
| 1289, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ&position=chr9:85913016-85915594 chr9:85913016-85915594] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624835.1_WSB_EiJ_v1 plot GCA_001624835.1_WSB_EiJ_v1] | |||
|- | |||
| 002 | |||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=A_J A_J] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=A_J A_J] | ||
Line 84: | Line 98: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624215.1_A_J_v1 plot GCA_001624215.1_A_J_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624215.1_A_J_v1 plot GCA_001624215.1_A_J_v1] | ||
|- | |- | ||
| | | 003 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CBA_J CBA_J] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CBA_J CBA_J] | ||
Line 98: | Line 112: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624475.1_CBA_J_v1 plot GCA_001624475.1_CBA_J_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624475.1_CBA_J_v1 plot GCA_001624475.1_CBA_J_v1] | ||
|- | |- | ||
| | | 004 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAROLI_EIJ CAROLI_EIJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAROLI_EIJ CAROLI_EIJ] | ||
Line 112: | Line 126: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_900094665.1_CAROLI_EIJ_v1 plot GCA_900094665.1_CAROLI_EIJ_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_900094665.1_CAROLI_EIJ_v1 plot GCA_900094665.1_CAROLI_EIJ_v1] | ||
|- | |- | ||
| | | 005 | ||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=LP_J LP_J] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632615.1/ GCA_001632615.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 405473 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 23153810 | |||
| | |||
| style='text-align:right'| 2996 | |||
| style='text-align:right'| 2347243646 | |||
| 1231, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=LP_J&position=chr19:15003741-15006203 chr19:15003741-15006203] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001632615.1_LP_J_v1 plot GCA_001632615.1_LP_J_v1] | |||
|- | |||
| 006 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=BALB_cJ BALB_cJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632525.1/ GCA_001632525.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 453227 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 28546282 | |||
| | |||
| style='text-align:right'| 3208 | |||
| style='text-align:right'| 2659711418 | |||
| 1726, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=BALB_cJ&position=chr6:125567161-125570613 chr6:125567161-125570613] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001632525.1_BALB_cJ_v1 plot GCA_001632525.1_BALB_cJ_v1] | |||
|- | |||
| 007 | |||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PAHARI_EIJ PAHARI_EIJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_900095145.1/ GCA_900095145.1] | |||
| tbd | |||
| style='text-align:right'| 432765 | |||
| style='text-align:right'| 33 | |||
| style='text-align:right'| 17591114 | |||
| | |||
| style='text-align:right'| 4877 | |||
| style='text-align:right'| 2885483004 | |||
| 2085, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PAHARI_EIJ&position=chr7:37074720-37078890 chr7:37074720-37078890] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_900095145.1_PAHARI_EIJ_v1 plot GCA_900095145.1_PAHARI_EIJ_v1] | |||
|- | |||
| 008 | |||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PWK_PhJ PWK_PhJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=PWK_PhJ PWK_PhJ] | ||
Line 126: | Line 182: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624775.1_PWK_PhJ_v1 plot GCA_001624775.1_PWK_PhJ_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624775.1_PWK_PhJ_v1 plot GCA_001624775.1_PWK_PhJ_v1] | ||
|- | |- | ||
| | | 009 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=DBA_2J DBA_2J] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=DBA_2J DBA_2J] | ||
Line 140: | Line 196: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624505.1_DBA_2J_v1 plot GCA_001624505.1_DBA_2J_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624505.1_DBA_2J_v1 plot GCA_001624505.1_DBA_2J_v1] | ||
|- | |- | ||
| | | 010 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NOD_ShiLtJ NOD_ShiLtJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NOD_ShiLtJ NOD_ShiLtJ] | ||
Line 154: | Line 210: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624675.1_NOD_ShiLtJ_v1 plot GCA_001624675.1_NOD_ShiLtJ_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624675.1_NOD_ShiLtJ_v1 plot GCA_001624675.1_NOD_ShiLtJ_v1] | ||
|- | |- | ||
| | | 011 | ||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=SPRET_EiJ SPRET_EiJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001624865.1/ GCA_001624865.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b | |||
| style='text-align:right'| 457522 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 33139291 | |||
| | |||
| style='text-align:right'| 2707 | |||
| style='text-align:right'| 2586459484 | |||
| 2050, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=SPRET_EiJ&position=chr14:83734846-83738946 chr14:83734846-83738946] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624865.1_SPRET_EiJ_v1 plot GCA_001624865.1_SPRET_EiJ_v1] | |||
|- | |||
| 012 | |||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NZO_HlLtJ NZO_HlLtJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=NZO_HlLtJ NZO_HlLtJ] | ||
Line 168: | Line 238: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624745.1_NZO_HlLtJ_v1 plot GCA_001624745.1_NZO_HlLtJ_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624745.1_NZO_HlLtJ_v1 plot GCA_001624745.1_NZO_HlLtJ_v1] | ||
|- | |- | ||
| | | 013 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=129S1_SvImJ 129S1_SvImJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=129S1_SvImJ 129S1_SvImJ] | ||
Line 182: | Line 252: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624185.1_129S1_SvImJ_v1 plot GCA_001624185.1_129S1_SvImJ_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624185.1_129S1_SvImJ_v1 plot GCA_001624185.1_129S1_SvImJ_v1] | ||
|- | |- | ||
| | | 014 | ||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C57BL_6NJ C57BL_6NJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632555.1/ GCA_001632555.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 429023 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 25052791 | |||
| | |||
| style='text-align:right'| 2909 | |||
| style='text-align:right'| 2447640962 | |||
| 1140, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C57BL_6NJ&position=chr7:119230972-119233252 chr7:119230972-119233252] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001632555.1_C57BL_6NJ_v1 plot GCA_001632555.1_C57BL_6NJ_v1] | |||
|- | |||
| 015 | |||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=AKR_J AKR_J] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=AKR_J AKR_J] | ||
Line 196: | Line 280: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624295.1_AKR_J_v1 plot GCA_001624295.1_AKR_J_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624295.1_AKR_J_v1 plot GCA_001624295.1_AKR_J_v1] | ||
|- | |- | ||
| | | 016 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAST_EiJ CAST_EiJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=CAST_EiJ CAST_EiJ] | ||
Line 210: | Line 294: | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624445.1_CAST_EiJ_v1 plot GCA_001624445.1_CAST_EiJ_v1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001624445.1_CAST_EiJ_v1 plot GCA_001624445.1_CAST_EiJ_v1] | ||
|- | |- | ||
| | | 017 | ||
| 2016 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C3H_HeJ C3H_HeJ] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCA_001632575.1/ GCA_001632575.1] | |||
| SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | |||
| style='text-align:right'| 427662 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 25752170 | |||
| | |||
| style='text-align:right'| 2957 | |||
| style='text-align:right'| 2474866264 | |||
| 1490, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=C3H_HeJ&position=chr3:96904048-96907028 chr3:96904048-96907028] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=GCA_001632575.1_C3H_HeJ_v1 plot GCA_001632575.1_C3H_HeJ_v1] | |||
|- | |||
| 018 | |||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=FVB_NJ FVB_NJ] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=FVB_NJ FVB_NJ] | ||
Line 235: | Line 333: | ||
| style='text-align:right'| 7363 | | style='text-align:right'| 7363 | ||
| style='text-align:right'| 7996145625 | | style='text-align:right'| 7996145625 | ||
| 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=CHM1&tanDups=pack&position=chr13:80499180-80499630 chr13:80499180-80499630] | | 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=CHM1&tanDups=pack&gap=dense&position=chr13:80499180-80499630 chr13:80499180-80499630] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=CHM1 plot CHM1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=CHM1 plot CHM1] | ||
|- | |- | ||
Line 249: | Line 347: | ||
| style='text-align:right'| 479 | | style='text-align:right'| 479 | ||
| style='text-align:right'| 270396956 | | style='text-align:right'| 270396956 | ||
| 448, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=acaChl1&tanDups=pack&position=KK830956:17007-17903 KK830956:17007-17903] | | 448, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=acaChl1&tanDups=pack&gap=dense&position=KK830956:17007-17903 KK830956:17007-17903] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=acaChl1 plot acaChl1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=acaChl1 plot acaChl1] | ||
|- | |- | ||
Line 263: | Line 361: | ||
| style='text-align:right'| 1165 | | style='text-align:right'| 1165 | ||
| style='text-align:right'| 777735 | | style='text-align:right'| 777735 | ||
| 35, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aciBauTYTH_1&tanDups=pack&position=chr_CP003856:2714351-2714421 chr_CP003856:2714351-2714421] | | 35, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aciBauTYTH_1&tanDups=pack&gap=dense&position=chr_CP003856:2714351-2714421 chr_CP003856:2714351-2714421] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aciBauTYTH_1 plot aciBauTYTH_1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aciBauTYTH_1 plot aciBauTYTH_1] | ||
|- | |- | ||
Line 277: | Line 375: | ||
| style='text-align:right'| 1833 | | style='text-align:right'| 1833 | ||
| style='text-align:right'| 319093167 | | style='text-align:right'| 319093167 | ||
| 126, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=afrOth13&tanDups=pack&position=3-3:1498405-1498657 3-3:1498405-1498657] | | 126, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=afrOth13&tanDups=pack&gap=dense&position=3-3:1498405-1498657 3-3:1498405-1498657] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=afrOth13 plot afrOth13] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=afrOth13 plot afrOth13] | ||
|- | |- | ||
Line 291: | Line 389: | ||
| style='text-align:right'| 7914 | | style='text-align:right'| 7914 | ||
| style='text-align:right'| 2120476903 | | style='text-align:right'| 2120476903 | ||
| 1357, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1&tanDups=pack&position=GL194066.1:206322-209037 GL194066.1:206322-209037] | | 1357, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1&tanDups=pack&gap=dense&position=GL194066.1:206322-209037 GL194066.1:206322-209037] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ailMel1 plot ailMel1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ailMel1 plot ailMel1] | ||
|- | |- | ||
Line 305: | Line 403: | ||
| style='text-align:right'| 2629 | | style='text-align:right'| 2629 | ||
| style='text-align:right'| 379690780 | | style='text-align:right'| 379690780 | ||
| 2771, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1&tanDups=pack&position=JH736852:249449-254991 JH736852:249449-254991] | | 2771, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1&tanDups=pack&gap=dense&position=JH736852:249449-254991 JH736852:249449-254991] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=allMis1 plot allMis1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=allMis1 plot allMis1] | ||
|- | |- | ||
Line 319: | Line 417: | ||
| style='text-align:right'| 3510 | | style='text-align:right'| 3510 | ||
| style='text-align:right'| 624671088 | | style='text-align:right'| 624671088 | ||
| 5451, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allSin1&tanDups=pack&position=KE696051:101233-112135 KE696051:101233-112135] | | 5451, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allSin1&tanDups=pack&gap=dense&position=KE696051:101233-112135 KE696051:101233-112135] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=allSin1 plot allSin1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=allSin1 plot allSin1] | ||
|- | |- | ||
Line 333: | Line 431: | ||
| style='text-align:right'| 256 | | style='text-align:right'| 256 | ||
| style='text-align:right'| 63766115 | | style='text-align:right'| 63766115 | ||
| 5218, 14, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1&tanDups=pack&position=KB272082:90533-100982 KB272082:90533-100982] | | 5218, 14, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1&tanDups=pack&gap=dense&position=KB272082:90533-100982 KB272082:90533-100982] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=amaVit1 plot amaVit1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=amaVit1 plot amaVit1] | ||
|- | |- | ||
Line 347: | Line 445: | ||
| style='text-align:right'| 401 | | style='text-align:right'| 401 | ||
| style='text-align:right'| 91882502 | | style='text-align:right'| 91882502 | ||
| 1258, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anaPla1&tanDups=pack&position=KB745735:2510-5026 KB745735:2510-5026] | | 1258, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anaPla1&tanDups=pack&gap=dense&position=KB745735:2510-5026 KB745735:2510-5026] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anaPla1 plot anaPla1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anaPla1 plot anaPla1] | ||
|- | |- | ||
Line 361: | Line 459: | ||
| style='text-align:right'| 389.5 | | style='text-align:right'| 389.5 | ||
| style='text-align:right'| 157542766 | | style='text-align:right'| 157542766 | ||
| 4183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ancCey1&tanDups=pack&position=JARK01001394v1:846761-855127 JARK01001394v1:846761-855127] | | 4183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ancCey1&tanDups=pack&gap=dense&position=JARK01001394v1:846761-855127 JARK01001394v1:846761-855127] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ancCey1 plot ancCey1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ancCey1 plot ancCey1] | ||
|- | |- | ||
Line 375: | Line 473: | ||
| style='text-align:right'| 800 | | style='text-align:right'| 800 | ||
| style='text-align:right'| 580570188 | | style='text-align:right'| 580570188 | ||
| 1181, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=angJap1&tanDups=pack&position=KI307522:56201-58563 KI307522:56201-58563] | | 1181, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=angJap1&tanDups=pack&gap=dense&position=KI307522:56201-58563 KI307522:56201-58563] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=angJap1 plot angJap1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=angJap1 plot angJap1] | ||
|- | |- | ||
Line 389: | Line 487: | ||
| style='text-align:right'| 2923 | | style='text-align:right'| 2923 | ||
| style='text-align:right'| 4158391303 | | style='text-align:right'| 4158391303 | ||
| 351, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar1&tanDups=pack&position=scaffold_31:2142294-2142996 scaffold_31:2142294-2142996] | | 351, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar1&tanDups=pack&gap=dense&position=scaffold_31:2142294-2142996 scaffold_31:2142294-2142996] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoCar1 plot anoCar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoCar1 plot anoCar1] | ||
|- | |- | ||
Line 403: | Line 501: | ||
| style='text-align:right'| 3201 | | style='text-align:right'| 3201 | ||
| style='text-align:right'| 3874056176 | | style='text-align:right'| 3874056176 | ||
| 392, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2&tanDups=pack&position=chr4:7395659-7396443 chr4:7395659-7396443] | | 392, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2&tanDups=pack&gap=dense&position=chr4:7395659-7396443 chr4:7395659-7396443] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoCar2 plot anoCar2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoCar2 plot anoCar2] | ||
|- | |- | ||
Line 417: | Line 515: | ||
| style='text-align:right'| 2383 | | style='text-align:right'| 2383 | ||
| style='text-align:right'| 356254048 | | style='text-align:right'| 356254048 | ||
| 1175, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoGam1&tanDups=pack&position=chrX:14717656-14720006 chrX:14717656-14720006] | | 1175, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoGam1&tanDups=pack&gap=dense&position=chrX:14717656-14720006 chrX:14717656-14720006] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoGam1 plot anoGam1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=anoGam1 plot anoGam1] | ||
|- | |- | ||
Line 431: | Line 529: | ||
| style='text-align:right'| 120 | | style='text-align:right'| 120 | ||
| style='text-align:right'| 236011041 | | style='text-align:right'| 236011041 | ||
| 453, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1&tanDups=pack&position=KB928133:814324-815231 KB928133:814324-815231] | | 453, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1&tanDups=pack&gap=dense&position=KB928133:814324-815231 KB928133:814324-815231] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apaSpi1 plot apaSpi1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apaSpi1 plot apaSpi1] | ||
|- | |- | ||
Line 445: | Line 543: | ||
| style='text-align:right'| 112 | | style='text-align:right'| 112 | ||
| style='text-align:right'| 56084043 | | style='text-align:right'| 56084043 | ||
| 453, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apaVit1&tanDups=pack&position=KL385068:59340-60246 KL385068:59340-60246] | | 453, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apaVit1&tanDups=pack&gap=dense&position=KL385068:59340-60246 KL385068:59340-60246] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apaVit1 plot apaVit1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apaVit1 plot apaVit1] | ||
|- | |- | ||
Line 459: | Line 557: | ||
| style='text-align:right'| 280 | | style='text-align:right'| 280 | ||
| style='text-align:right'| 81345069 | | style='text-align:right'| 81345069 | ||
| 203, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel1&tanDups=pack&position=GroupUn.6971:896-1302 GroupUn.6971:896-1302] | | 203, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel1&tanDups=pack&gap=dense&position=GroupUn.6971:896-1302 GroupUn.6971:896-1302] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel1 plot apiMel1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel1 plot apiMel1] | ||
|- | |- | ||
Line 473: | Line 571: | ||
| style='text-align:right'| 295 | | style='text-align:right'| 295 | ||
| style='text-align:right'| 110415978 | | style='text-align:right'| 110415978 | ||
| 234, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel2&tanDups=pack&position=Group8:8120781-8121249 Group8:8120781-8121249] | | 234, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel2&tanDups=pack&gap=dense&position=Group8:8120781-8121249 Group8:8120781-8121249] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel2 plot apiMel2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel2 plot apiMel2] | ||
|- | |- | ||
Line 487: | Line 585: | ||
| style='text-align:right'| 318 | | style='text-align:right'| 318 | ||
| style='text-align:right'| 146199642 | | style='text-align:right'| 146199642 | ||
| 234, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel3&tanDups=pack&position=Group8:9788059-9788527 Group8:9788059-9788527] | | 234, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel3&tanDups=pack&gap=dense&position=Group8:9788059-9788527 Group8:9788059-9788527] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel3 plot apiMel3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel3 plot apiMel3] | ||
|- | |- | ||
Line 501: | Line 599: | ||
| style='text-align:right'| 328 | | style='text-align:right'| 328 | ||
| style='text-align:right'| 182902657 | | style='text-align:right'| 182902657 | ||
| 234, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel4&tanDups=pack&position=Group8:11123745-11124213 Group8:11123745-11124213] | | 234, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=apiMel4&tanDups=pack&gap=dense&position=Group8:11123745-11124213 Group8:11123745-11124213] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel4 plot apiMel4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=apiMel4 plot apiMel4] | ||
|- | |- | ||
Line 515: | Line 613: | ||
| style='text-align:right'| 1162 | | style='text-align:right'| 1162 | ||
| style='text-align:right'| 1691576982 | | style='text-align:right'| 1691576982 | ||
| 254, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aplCal1&tanDups=pack&position=scaffold_486:233208-233716 scaffold_486:233208-233716] | | 254, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aplCal1&tanDups=pack&gap=dense&position=scaffold_486:233208-233716 scaffold_486:233208-233716] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aplCal1 plot aplCal1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aplCal1 plot aplCal1] | ||
|- | |- | ||
Line 529: | Line 627: | ||
| style='text-align:right'| 120 | | style='text-align:right'| 120 | ||
| style='text-align:right'| 162744750 | | style='text-align:right'| 162744750 | ||
| 2370, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptFor1&tanDups=pack&position=KL225745:613720-618460 KL225745:613720-618460] | | 2370, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptFor1&tanDups=pack&gap=dense&position=KL225745:613720-618460 KL225745:613720-618460] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aptFor1 plot aptFor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aptFor1 plot aptFor1] | ||
|- | |- | ||
Line 543: | Line 641: | ||
| style='text-align:right'| 159 | | style='text-align:right'| 159 | ||
| style='text-align:right'| 396269019 | | style='text-align:right'| 396269019 | ||
| 13772, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptMan1&tanDups=pack&position=NW_013987314v1:1452350-1479894 NW_013987314v1:1452350-1479894] | | 13772, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aptMan1&tanDups=pack&gap=dense&position=NW_013987314v1:1452350-1479894 NW_013987314v1:1452350-1479894] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aptMan1 plot aptMan1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aptMan1 plot aptMan1] | ||
|- | |- | ||
Line 557: | Line 655: | ||
| style='text-align:right'| 43 | | style='text-align:right'| 43 | ||
| style='text-align:right'| 70439237 | | style='text-align:right'| 70439237 | ||
| 98, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr1&tanDups=pack&position=KK848043:4630547-4630743 KK848043:4630547-4630743] | | 98, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr1&tanDups=pack&gap=dense&position=KK848043:4630547-4630743 KK848043:4630547-4630743] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aquChr1 plot aquChr1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aquChr1 plot aquChr1] | ||
|- | |- | ||
Line 571: | Line 669: | ||
| style='text-align:right'| 548 | | style='text-align:right'| 548 | ||
| style='text-align:right'| 117223799 | | style='text-align:right'| 117223799 | ||
| 6351, 4, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr2&tanDups=pack&position=KN265844v1:264833-277538 KN265844v1:264833-277538] | | 6351, 4, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=aquChr2&tanDups=pack&gap=dense&position=KN265844v1:264833-277538 KN265844v1:264833-277538] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aquChr2 plot aquChr2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=aquChr2 plot aquChr2] | ||
|- | |- | ||
Line 585: | Line 683: | ||
| style='text-align:right'| 1788 | | style='text-align:right'| 1788 | ||
| style='text-align:right'| 35728109 | | style='text-align:right'| 35728109 | ||
| 241, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=araMac1&tanDups=pack&position=KE047968:4314-4797 KE047968:4314-4797] | | 241, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=araMac1&tanDups=pack&gap=dense&position=KE047968:4314-4797 KE047968:4314-4797] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=araMac1 plot araMac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=araMac1 plot araMac1] | ||
|- | |- | ||
Line 599: | Line 697: | ||
| style='text-align:right'| 4141 | | style='text-align:right'| 4141 | ||
| style='text-align:right'| 237921318 | | style='text-align:right'| 237921318 | ||
| 415, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=araTha1&tanDups=pack&position=chr3:12226092-12226922 chr3:12226092-12226922] | | 415, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=araTha1&tanDups=pack&gap=dense&position=chr3:12226092-12226922 chr3:12226092-12226922] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=araTha1 plot araTha1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=araTha1 plot araTha1] | ||
|- | |- | ||
Line 613: | Line 711: | ||
| style='text-align:right'| 136 | | style='text-align:right'| 136 | ||
| style='text-align:right'| 30068625 | | style='text-align:right'| 30068625 | ||
| 680, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1&tanDups=pack&position=JH878990v1:516922-518282 JH878990v1:516922-518282] | | 680, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ascSuu1&tanDups=pack&gap=dense&position=JH878990v1:516922-518282 JH878990v1:516922-518282] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ascSuu1 plot ascSuu1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ascSuu1 plot ascSuu1] | ||
|- | |- | ||
Line 627: | Line 725: | ||
| style='text-align:right'| 344 | | style='text-align:right'| 344 | ||
| style='text-align:right'| 878056894 | | style='text-align:right'| 878056894 | ||
| 647, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1&tanDups=pack&position=KB872443:19678-20972 KB872443:19678-20972] | | 647, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1&tanDups=pack&gap=dense&position=KB872443:19678-20972 KB872443:19678-20972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=astMex1 plot astMex1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=astMex1 plot astMex1] | ||
|- | |- | ||
Line 641: | Line 739: | ||
| style='text-align:right'| 7511 | | style='text-align:right'| 7511 | ||
| style='text-align:right'| 2584004816 | | style='text-align:right'| 2584004816 | ||
| 5160, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balAcu1&tanDups=pack&position=KI537228:6365-16685 KI537228:6365-16685] | | 5160, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balAcu1&tanDups=pack&gap=dense&position=KI537228:6365-16685 KI537228:6365-16685] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=balAcu1 plot balAcu1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=balAcu1 plot balAcu1] | ||
|- | |- | ||
Line 655: | Line 753: | ||
| style='text-align:right'| 127 | | style='text-align:right'| 127 | ||
| style='text-align:right'| 51713556 | | style='text-align:right'| 51713556 | ||
| 375, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balPav1&tanDups=pack&position=KL478702:45795-46545 KL478702:45795-46545] | | 375, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balPav1&tanDups=pack&gap=dense&position=KL478702:45795-46545 KL478702:45795-46545] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=balPav1 plot balPav1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=balPav1 plot balPav1] | ||
|- | |- | ||
Line 669: | Line 767: | ||
| style='text-align:right'| 8700.5 | | style='text-align:right'| 8700.5 | ||
| style='text-align:right'| 8769740309 | | style='text-align:right'| 8769740309 | ||
| 338, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bisBis1&tanDups=pack&position=KN265095v1:5133899-5134575 KN265095v1:5133899-5134575] | | 338, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bisBis1&tanDups=pack&gap=dense&position=KN265095v1:5133899-5134575 KN265095v1:5133899-5134575] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bisBis1 plot bisBis1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bisBis1 plot bisBis1] | ||
|- | |- | ||
Line 683: | Line 781: | ||
| style='text-align:right'| 847 | | style='text-align:right'| 847 | ||
| style='text-align:right'| 394283618 | | style='text-align:right'| 394283618 | ||
| 125, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=borEut13&tanDups=pack&position=chr4:75059497-75059747 chr4:75059497-75059747] | | 125, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=borEut13&tanDups=pack&gap=dense&position=chr4:75059497-75059747 chr4:75059497-75059747] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=borEut13 plot borEut13] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=borEut13 plot borEut13] | ||
|- | |- | ||
Line 697: | Line 795: | ||
| style='text-align:right'| 8148 | | style='text-align:right'| 8148 | ||
| style='text-align:right'| 6401204703 | | style='text-align:right'| 6401204703 | ||
| 2625, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosMut1&tanDups=pack&position=JH881616:2629253-2634503 JH881616:2629253-2634503] | | 2625, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosMut1&tanDups=pack&gap=dense&position=JH881616:2629253-2634503 JH881616:2629253-2634503] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosMut1 plot bosMut1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosMut1 plot bosMut1] | ||
|- | |- | ||
Line 711: | Line 809: | ||
| style='text-align:right'| 3236 | | style='text-align:right'| 3236 | ||
| style='text-align:right'| 1418202012 | | style='text-align:right'| 1418202012 | ||
| 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau1&tanDups=pack&position=SCAFFOLD225782:8549-9213 SCAFFOLD225782:8549-9213] | | 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau1&tanDups=pack&gap=dense&position=SCAFFOLD225782:8549-9213 SCAFFOLD225782:8549-9213] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau1 plot bosTau1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau1 plot bosTau1] | ||
|- | |- | ||
Line 725: | Line 823: | ||
| style='text-align:right'| 9334 | | style='text-align:right'| 9334 | ||
| style='text-align:right'| 11023049142 | | style='text-align:right'| 11023049142 | ||
| 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau3&tanDups=pack&position=chr5:47411355-47412019 chr5:47411355-47412019] | | 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau3&tanDups=pack&gap=dense&position=chr5:47411355-47412019 chr5:47411355-47412019] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau3 plot bosTau3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau3 plot bosTau3] | ||
|- | |- | ||
Line 739: | Line 837: | ||
| style='text-align:right'| 9381 | | style='text-align:right'| 9381 | ||
| style='text-align:right'| 11147570812 | | style='text-align:right'| 11147570812 | ||
| 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau4&tanDups=pack&position=chr5:52417493-52418157 chr5:52417493-52418157] | | 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau4&tanDups=pack&gap=dense&position=chr5:52417493-52418157 chr5:52417493-52418157] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau4 plot bosTau4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau4 plot bosTau4] | ||
|- | |- | ||
Line 753: | Line 851: | ||
| style='text-align:right'| 9372 | | style='text-align:right'| 9372 | ||
| style='text-align:right'| 10891150076 | | style='text-align:right'| 10891150076 | ||
| 474, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau5&tanDups=pack&position=chr1:65205480-65206428 chr1:65205480-65206428] | | 474, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau5&tanDups=pack&gap=dense&position=chr1:65205480-65206428 chr1:65205480-65206428] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau5 plot bosTau5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau5 plot bosTau5] | ||
|- | |- | ||
Line 767: | Line 865: | ||
| style='text-align:right'| 8928 | | style='text-align:right'| 8928 | ||
| style='text-align:right'| 11394478150 | | style='text-align:right'| 11394478150 | ||
| 923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau6&tanDups=pack&position=chr22:31476636-31478482 chr22:31476636-31478482] | | 923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau6&tanDups=pack&gap=dense&position=chr22:31476636-31478482 chr22:31476636-31478482] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau6 plot bosTau6] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau6 plot bosTau6] | ||
|- | |- | ||
Line 781: | Line 879: | ||
| style='text-align:right'| 8876 | | style='text-align:right'| 8876 | ||
| style='text-align:right'| 11556236690 | | style='text-align:right'| 11556236690 | ||
| 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7&tanDups=pack&position=chr5:52215273-52215937 chr5:52215273-52215937] | | 332, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7&tanDups=pack&gap=dense&position=chr5:52215273-52215937 chr5:52215273-52215937] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau7 plot bosTau7] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau7 plot bosTau7] | ||
|- | |- | ||
Line 795: | Line 893: | ||
| style='text-align:right'| 8930 | | style='text-align:right'| 8930 | ||
| style='text-align:right'| 11394290218 | | style='text-align:right'| 11394290218 | ||
| 923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8&tanDups=pack&position=chr22:31476636-31478482 chr22:31476636-31478482] | | 923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8&tanDups=pack&gap=dense&position=chr22:31476636-31478482 chr22:31476636-31478482] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau8 plot bosTau8] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTau8 plot bosTau8] | ||
|- | |- | ||
Line 809: | Line 907: | ||
| style='text-align:right'| 9197 | | style='text-align:right'| 9197 | ||
| style='text-align:right'| 11353955385 | | style='text-align:right'| 11353955385 | ||
| 923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTauMd3&tanDups=pack&position=chr22:31476636-31478482 chr22:31476636-31478482] | | 923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTauMd3&tanDups=pack&gap=dense&position=chr22:31476636-31478482 chr22:31476636-31478482] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTauMd3 plot bosTauMd3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bosTauMd3 plot bosTauMd3] | ||
|- | |- | ||
Line 823: | Line 921: | ||
| style='text-align:right'| 1088 | | style='text-align:right'| 1088 | ||
| style='text-align:right'| 1244816809 | | style='text-align:right'| 1244816809 | ||
| 1512, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=braFlo2&tanDups=pack&position=Bf_V2_32:3091839-3094863 Bf_V2_32:3091839-3094863] | | 1512, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=braFlo2&tanDups=pack&gap=dense&position=Bf_V2_32:3091839-3094863 Bf_V2_32:3091839-3094863] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braFlo2 plot braFlo2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braFlo2 plot braFlo2] | ||
|- | |- | ||
Line 837: | Line 935: | ||
| style='text-align:right'| 2750 | | style='text-align:right'| 2750 | ||
| style='text-align:right'| 314357742 | | style='text-align:right'| 314357742 | ||
| 1288, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=braRap1&tanDups=pack&position=chrA5:13328835-13331412 chrA5:13328835-13331412] | | 1288, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=braRap1&tanDups=pack&gap=dense&position=chrA5:13328835-13331412 chrA5:13328835-13331412] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braRap1 plot braRap1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=braRap1 plot braRap1] | ||
|- | |- | ||
Line 851: | Line 949: | ||
| style='text-align:right'| 264 | | style='text-align:right'| 264 | ||
| style='text-align:right'| 46555408 | | style='text-align:right'| 46555408 | ||
| 321, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal1&tanDups=pack&position=Bmal_supercontigDegenerate10576:240-882 Bmal_supercontigDegenerate10576:240-882] | | 321, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal1&tanDups=pack&gap=dense&position=Bmal_supercontigDegenerate10576:240-882 Bmal_supercontigDegenerate10576:240-882] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal1 plot bruMal1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal1 plot bruMal1] | ||
|- | |- | ||
Line 865: | Line 963: | ||
| style='text-align:right'| 402 | | style='text-align:right'| 402 | ||
| style='text-align:right'| 111607550 | | style='text-align:right'| 111607550 | ||
| 453, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2&tanDups=pack&position=Bmal_v3_scaffold8088:119-1025 Bmal_v3_scaffold8088:119-1025] | | 453, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bruMal2&tanDups=pack&gap=dense&position=Bmal_v3_scaffold8088:119-1025 Bmal_v3_scaffold8088:119-1025] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal2 plot bruMal2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bruMal2 plot bruMal2] | ||
|- | |- | ||
Line 879: | Line 977: | ||
| style='text-align:right'| 7913 | | style='text-align:right'| 7913 | ||
| style='text-align:right'| 8291159158 | | style='text-align:right'| 8291159158 | ||
| 576, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bubBub1&tanDups=pack&position=KI419055:2574813-2575965 KI419055:2574813-2575965] | | 576, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bubBub1&tanDups=pack&gap=dense&position=KI419055:2574813-2575965 KI419055:2574813-2575965] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bubBub1 plot bubBub1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bubBub1 plot bubBub1] | ||
|- | |- | ||
Line 893: | Line 991: | ||
| style='text-align:right'| 73 | | style='text-align:right'| 73 | ||
| style='text-align:right'| 48672532 | | style='text-align:right'| 48672532 | ||
| 715, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bucRhi1&tanDups=pack&position=KL533494:44624-46054 KL533494:44624-46054] | | 715, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bucRhi1&tanDups=pack&gap=dense&position=KL533494:44624-46054 KL533494:44624-46054] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bucRhi1 plot bucRhi1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=bucRhi1 plot bucRhi1] | ||
|- | |- | ||
Line 907: | Line 1,005: | ||
| style='text-align:right'| 1694 | | style='text-align:right'| 1694 | ||
| style='text-align:right'| 51888226 | | style='text-align:right'| 51888226 | ||
| 134, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1&tanDups=pack&position=scaffold01254:876286-876554 scaffold01254:876286-876554] | | 134, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=burXyl1&tanDups=pack&gap=dense&position=scaffold01254:876286-876554 scaffold01254:876286-876554] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=burXyl1 plot burXyl1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=burXyl1 plot burXyl1] | ||
|- | |- | ||
Line 921: | Line 1,019: | ||
| style='text-align:right'| 305 | | style='text-align:right'| 305 | ||
| style='text-align:right'| 156635287 | | style='text-align:right'| 156635287 | ||
| 71, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng1&tanDups=pack&position=scafRNAPATHr22140:12806-12948 scafRNAPATHr22140:12806-12948] | | 71, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng1&tanDups=pack&gap=dense&position=scafRNAPATHr22140:12806-12948 scafRNAPATHr22140:12806-12948] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng1 plot caeAng1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng1 plot caeAng1] | ||
|- | |- | ||
Line 935: | Line 1,033: | ||
| style='text-align:right'| 369 | | style='text-align:right'| 369 | ||
| style='text-align:right'| 202631392 | | style='text-align:right'| 202631392 | ||
| 131, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2&tanDups=pack&position=Cang_2012_03_13_00262:54689-54951 Cang_2012_03_13_00262:54689-54951] | | 131, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeAng2&tanDups=pack&gap=dense&position=Cang_2012_03_13_00262:54689-54951 Cang_2012_03_13_00262:54689-54951] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng2 plot caeAng2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeAng2 plot caeAng2] | ||
|- | |- | ||
Line 949: | Line 1,047: | ||
| style='text-align:right'| 669 | | style='text-align:right'| 669 | ||
| style='text-align:right'| 184995823 | | style='text-align:right'| 184995823 | ||
| 179, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap1&tanDups=pack&position=chrUn:91344286-91344644 chrUn:91344286-91344644] | | 179, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap1&tanDups=pack&gap=dense&position=chrUn:91344286-91344644 chrUn:91344286-91344644] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap1 plot caeJap1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap1 plot caeJap1] | ||
|- | |- | ||
Line 963: | Line 1,061: | ||
| style='text-align:right'| 1128.5 | | style='text-align:right'| 1128.5 | ||
| style='text-align:right'| 219090212 | | style='text-align:right'| 219090212 | ||
| 153, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap2&tanDups=pack&position=chrUn:143662847-143663153 chrUn:143662847-143663153] | | 153, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap2&tanDups=pack&gap=dense&position=chrUn:143662847-143663153 chrUn:143662847-143663153] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2 plot caeJap2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2 plot caeJap2] | ||
|- | |- | ||
Line 977: | Line 1,075: | ||
| style='text-align:right'| 973 | | style='text-align:right'| 973 | ||
| style='text-align:right'| 192672580 | | style='text-align:right'| 192672580 | ||
| 153, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap2a&tanDups=pack&position=Cjap_Contig3098:12088-12394 Cjap_Contig3098:12088-12394] | | 153, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap2a&tanDups=pack&gap=dense&position=Cjap_Contig3098:12088-12394 Cjap_Contig3098:12088-12394] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2a plot caeJap2a] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap2a plot caeJap2a] | ||
|- | |- | ||
Line 991: | Line 1,089: | ||
| style='text-align:right'| 360 | | style='text-align:right'| 360 | ||
| style='text-align:right'| 75708219 | | style='text-align:right'| 75708219 | ||
| 176, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap3&tanDups=pack&position=ABLE03028834:844-1196 ABLE03028834:844-1196] | | 176, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap3&tanDups=pack&gap=dense&position=ABLE03028834:844-1196 ABLE03028834:844-1196] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap3 plot caeJap3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap3 plot caeJap3] | ||
|- | |- | ||
Line 1,005: | Line 1,103: | ||
| style='text-align:right'| 815 | | style='text-align:right'| 815 | ||
| style='text-align:right'| 226847582 | | style='text-align:right'| 226847582 | ||
| 176, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4&tanDups=pack&position=Scaffold17893:329482-329834 Scaffold17893:329482-329834] | | 176, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeJap4&tanDups=pack&gap=dense&position=Scaffold17893:329482-329834 Scaffold17893:329482-329834] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap4 plot caeJap4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeJap4 plot caeJap4] | ||
|- | |- | ||
Line 1,019: | Line 1,117: | ||
| style='text-align:right'| 2009 | | style='text-align:right'| 2009 | ||
| style='text-align:right'| 281616954 | | style='text-align:right'| 281616954 | ||
| 168, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb1&tanDups=pack&position=chrUn:161968878-161969214 chrUn:161968878-161969214] | | 168, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb1&tanDups=pack&gap=dense&position=chrUn:161968878-161969214 chrUn:161968878-161969214] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb1 plot caePb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb1 plot caePb1] | ||
|- | |- | ||
Line 1,033: | Line 1,131: | ||
| style='text-align:right'| 3788.5 | | style='text-align:right'| 3788.5 | ||
| style='text-align:right'| 420907669 | | style='text-align:right'| 420907669 | ||
| 239, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb2&tanDups=pack&position=chrUn:97561553-97562031 chrUn:97561553-97562031] | | 239, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb2&tanDups=pack&gap=dense&position=chrUn:97561553-97562031 chrUn:97561553-97562031] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb2 plot caePb2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb2 plot caePb2] | ||
|- | |- | ||
Line 1,047: | Line 1,145: | ||
| style='text-align:right'| 3770 | | style='text-align:right'| 3770 | ||
| style='text-align:right'| 420080585 | | style='text-align:right'| 420080585 | ||
| 239, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3&tanDups=pack&position=Scfld02_132:346628-347106 Scfld02_132:346628-347106] | | 239, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3&tanDups=pack&gap=dense&position=Scfld02_132:346628-347106 Scfld02_132:346628-347106] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb3 plot caePb3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caePb3 plot caePb3] | ||
|- | |- | ||
Line 1,061: | Line 1,159: | ||
| style='text-align:right'| 1786 | | style='text-align:right'| 1786 | ||
| style='text-align:right'| 318215569 | | style='text-align:right'| 318215569 | ||
| 193, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem1&tanDups=pack&position=SuperCont3184:2552-2938 SuperCont3184:2552-2938] | | 193, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem1&tanDups=pack&gap=dense&position=SuperCont3184:2552-2938 SuperCont3184:2552-2938] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem1 plot caeRem1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem1 plot caeRem1] | ||
|- | |- | ||
Line 1,075: | Line 1,173: | ||
| style='text-align:right'| 859 | | style='text-align:right'| 859 | ||
| style='text-align:right'| 350685995 | | style='text-align:right'| 350685995 | ||
| 193, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem2&tanDups=pack&position=chrUn:145434398-145434784 chrUn:145434398-145434784] | | 193, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem2&tanDups=pack&gap=dense&position=chrUn:145434398-145434784 chrUn:145434398-145434784] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem2 plot caeRem2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem2 plot caeRem2] | ||
|- | |- | ||
Line 1,089: | Line 1,187: | ||
| style='text-align:right'| 2408 | | style='text-align:right'| 2408 | ||
| style='text-align:right'| 318941600 | | style='text-align:right'| 318941600 | ||
| 181, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem3&tanDups=pack&position=chrUn:147913992-147914354 chrUn:147913992-147914354] | | 181, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem3&tanDups=pack&gap=dense&position=chrUn:147913992-147914354 chrUn:147913992-147914354] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem3 plot caeRem3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem3 plot caeRem3] | ||
|- | |- | ||
Line 1,103: | Line 1,201: | ||
| style='text-align:right'| 2320 | | style='text-align:right'| 2320 | ||
| style='text-align:right'| 319257206 | | style='text-align:right'| 319257206 | ||
| 181, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem4&tanDups=pack&position=Crem_Contig169:93478-93840 Crem_Contig169:93478-93840] | | 181, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeRem4&tanDups=pack&gap=dense&position=Crem_Contig169:93478-93840 Crem_Contig169:93478-93840] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem4 plot caeRem4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeRem4 plot caeRem4] | ||
|- | |- | ||
Line 1,117: | Line 1,215: | ||
| style='text-align:right'| 2230.5 | | style='text-align:right'| 2230.5 | ||
| style='text-align:right'| 70961296 | | style='text-align:right'| 70961296 | ||
| 161, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111&tanDups=pack&position=Scaffold630:3047861-3048183 Scaffold630:3047861-3048183] | | 161, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp111&tanDups=pack&gap=dense&position=Scaffold630:3047861-3048183 Scaffold630:3047861-3048183] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp111 plot caeSp111] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp111 plot caeSp111] | ||
|- | |- | ||
Line 1,131: | Line 1,229: | ||
| style='text-align:right'| 1869 | | style='text-align:right'| 1869 | ||
| style='text-align:right'| 57741956 | | style='text-align:right'| 57741956 | ||
| 109, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51&tanDups=pack&position=Csp5_scaffold_04217:6885-7103 Csp5_scaffold_04217:6885-7103] | | 109, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp51&tanDups=pack&gap=dense&position=Csp5_scaffold_04217:6885-7103 Csp5_scaffold_04217:6885-7103] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp51 plot caeSp51] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp51 plot caeSp51] | ||
|- | |- | ||
Line 1,145: | Line 1,243: | ||
| style='text-align:right'| 1418 | | style='text-align:right'| 1418 | ||
| style='text-align:right'| 221671479 | | style='text-align:right'| 221671479 | ||
| 195, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp91&tanDups=pack&position=Scaffold7109:118818-119208 Scaffold7109:118818-119208] | | 195, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=caeSp91&tanDups=pack&gap=dense&position=Scaffold7109:118818-119208 Scaffold7109:118818-119208] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp91 plot caeSp91] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=caeSp91 plot caeSp91] | ||
|- | |- | ||
Line 1,159: | Line 1,257: | ||
| style='text-align:right'| 590 | | style='text-align:right'| 590 | ||
| style='text-align:right'| 450885170 | | style='text-align:right'| 450885170 | ||
| 1104, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calAnn1&tanDups=pack&position=KL218440:2851016-2853224 KL218440:2851016-2853224] | | 1104, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calAnn1&tanDups=pack&gap=dense&position=KL218440:2851016-2853224 KL218440:2851016-2853224] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calAnn1 plot calAnn1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calAnn1 plot calAnn1] | ||
|- | |- | ||
Line 1,173: | Line 1,271: | ||
| style='text-align:right'| 2838 | | style='text-align:right'| 2838 | ||
| style='text-align:right'| 7224876806 | | style='text-align:right'| 7224876806 | ||
| 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac1&tanDups=pack&position=Contig38531:3004-3688 Contig38531:3004-3688] | | 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac1&tanDups=pack&gap=dense&position=Contig38531:3004-3688 Contig38531:3004-3688] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calJac1 plot calJac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calJac1 plot calJac1] | ||
|- | |- | ||
Line 1,187: | Line 1,285: | ||
| style='text-align:right'| 4319 | | style='text-align:right'| 4319 | ||
| style='text-align:right'| 6020954211 | | style='text-align:right'| 6020954211 | ||
| 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3&tanDups=pack&position=chrUn_GL289980:2548-3232 chrUn_GL289980:2548-3232] | | 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3&tanDups=pack&gap=dense&position=chrUn_GL289980:2548-3232 chrUn_GL289980:2548-3232] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calJac3 plot calJac3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calJac3 plot calJac3] | ||
|- | |- | ||
Line 1,201: | Line 1,299: | ||
| style='text-align:right'| 1428 | | style='text-align:right'| 1428 | ||
| style='text-align:right'| 1794921679 | | style='text-align:right'| 1794921679 | ||
| 144, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calMil1&tanDups=pack&position=KI635985:586597-586885 KI635985:586597-586885] | | 144, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calMil1&tanDups=pack&gap=dense&position=KI635985:586597-586885 KI635985:586597-586885] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calMil1 plot calMil1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=calMil1 plot calMil1] | ||
|- | |- | ||
Line 1,215: | Line 1,313: | ||
| style='text-align:right'| 162 | | style='text-align:right'| 162 | ||
| style='text-align:right'| 292517673 | | style='text-align:right'| 292517673 | ||
| 934, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1&tanDups=pack&position=KB017230:2215149-2217017 KB017230:2215149-2217017] | | 934, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1&tanDups=pack&gap=dense&position=KB017230:2215149-2217017 KB017230:2215149-2217017] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=camFer1 plot camFer1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=camFer1 plot camFer1] | ||
|- | |- | ||
Line 1,229: | Line 1,327: | ||
| style='text-align:right'| 8269 | | style='text-align:right'| 8269 | ||
| style='text-align:right'| 6176862199 | | style='text-align:right'| 6176862199 | ||
| 292, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam1&tanDups=pack&position=chr7:79846479-79847063 chr7:79846479-79847063] | | 292, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam1&tanDups=pack&gap=dense&position=chr7:79846479-79847063 chr7:79846479-79847063] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam1 plot canFam1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam1 plot canFam1] | ||
|- | |- | ||
Line 1,243: | Line 1,341: | ||
| style='text-align:right'| 7862 | | style='text-align:right'| 7862 | ||
| style='text-align:right'| 8147344317 | | style='text-align:right'| 8147344317 | ||
| 746, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam2&tanDups=pack&position=chrUn:76334072-76335564 chrUn:76334072-76335564] | | 746, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam2&tanDups=pack&gap=dense&position=chrUn:76334072-76335564 chrUn:76334072-76335564] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam2 plot canFam2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam2 plot canFam2] | ||
|- | |- | ||
Line 1,257: | Line 1,355: | ||
| style='text-align:right'| 7312 | | style='text-align:right'| 7312 | ||
| style='text-align:right'| 7976595682 | | style='text-align:right'| 7976595682 | ||
| 292, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3&tanDups=pack&position=chr7:77369247-77369831 chr7:77369247-77369831] | | 292, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3&tanDups=pack&gap=dense&position=chr7:77369247-77369831 chr7:77369247-77369831] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam3 plot canFam3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFam3 plot canFam3] | ||
|- | |- | ||
Line 1,271: | Line 1,369: | ||
| style='text-align:right'| 138 | | style='text-align:right'| 138 | ||
| style='text-align:right'| 18530637 | | style='text-align:right'| 18530637 | ||
| 210, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFamPoodle1&tanDups=pack&position=AACN010470517:102-522 AACN010470517:102-522] | | 210, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFamPoodle1&tanDups=pack&gap=dense&position=AACN010470517:102-522 AACN010470517:102-522] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFamPoodle1 plot canFamPoodle1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canFamPoodle1 plot canFamPoodle1] | ||
|- | |- | ||
Line 1,285: | Line 1,383: | ||
| style='text-align:right'| 617 | | style='text-align:right'| 617 | ||
| style='text-align:right'| 139440788 | | style='text-align:right'| 139440788 | ||
| 121, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canHg12&tanDups=pack&position=12:76878573-76878815 12:76878573-76878815] | | 121, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canHg12&tanDups=pack&gap=dense&position=12:76878573-76878815 12:76878573-76878815] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canHg12 plot canHg12] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=canHg12 plot canHg12] | ||
|- | |- | ||
Line 1,299: | Line 1,397: | ||
| style='text-align:right'| 389.5 | | style='text-align:right'| 389.5 | ||
| style='text-align:right'| 221999357 | | style='text-align:right'| 221999357 | ||
| 1265, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capCar1&tanDups=pack&position=KL360999:16916-19447 KL360999:16916-19447] | | 1265, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capCar1&tanDups=pack&gap=dense&position=KL360999:16916-19447 KL360999:16916-19447] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capCar1 plot capCar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capCar1 plot capCar1] | ||
|- | |- | ||
Line 1,313: | Line 1,411: | ||
| style='text-align:right'| 6750 | | style='text-align:right'| 6750 | ||
| style='text-align:right'| 4701845701 | | style='text-align:right'| 4701845701 | ||
| 4915, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1&tanDups=pack&position=chr24:61180186-61190016 chr24:61180186-61190016] | | 4915, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1&tanDups=pack&gap=dense&position=chr24:61180186-61190016 chr24:61180186-61190016] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capHir1 plot capHir1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=capHir1 plot capHir1] | ||
|- | |- | ||
Line 1,327: | Line 1,425: | ||
| style='text-align:right'| 68 | | style='text-align:right'| 68 | ||
| style='text-align:right'| 30549622 | | style='text-align:right'| 30549622 | ||
| 529, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=carCri1&tanDups=pack&position=KK515247:46620-47678 KK515247:46620-47678] | | 529, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=carCri1&tanDups=pack&gap=dense&position=KK515247:46620-47678 KK515247:46620-47678] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=carCri1 plot carCri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=carCri1 plot carCri1] | ||
|- | |- | ||
| 099 | | 099 | ||
| 2006 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor2 cavPor2] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 153670 | |||
| style='text-align:right'| 41 | |||
| style='text-align:right'| 9672753 | |||
| | |||
| style='text-align:right'| 3682 | |||
| style='text-align:right'| 600037188 | |||
| 260, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor2&tanDups=pack&gap=dense&position=scaffold_228157:14475-14995 scaffold_228157:14475-14995] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cavPor2 plot cavPor2] | |||
|- | |||
| 100 | |||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3] | ||
Line 1,341: | Line 1,453: | ||
| style='text-align:right'| 5720 | | style='text-align:right'| 5720 | ||
| style='text-align:right'| 3122228393 | | style='text-align:right'| 3122228393 | ||
| 260, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3&tanDups=pack&position=scaffold_239:788868-789388 scaffold_239:788868-789388] | | 260, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3&tanDups=pack&gap=dense&position=scaffold_239:788868-789388 scaffold_239:788868-789388] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cavPor3 plot cavPor3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cavPor3 plot cavPor3] | ||
|- | |- | ||
| | | 101 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb1 cb1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb1 cb1] | ||
Line 1,355: | Line 1,467: | ||
| style='text-align:right'| 558 | | style='text-align:right'| 558 | ||
| style='text-align:right'| 98718219 | | style='text-align:right'| 98718219 | ||
| 191, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb1&tanDups=pack&position=chrUn:90311348-90311730 chrUn:90311348-90311730] | | 191, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb1&tanDups=pack&gap=dense&position=chrUn:90311348-90311730 chrUn:90311348-90311730] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb1 plot cb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb1 plot cb1] | ||
|- | |- | ||
| | | 102 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb2 cb2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb2 cb2] | ||
Line 1,369: | Line 1,481: | ||
| style='text-align:right'| 560 | | style='text-align:right'| 560 | ||
| style='text-align:right'| 98588417 | | style='text-align:right'| 98588417 | ||
| 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb2&tanDups=pack&position=chrIII:126724-127358 chrIII:126724-127358] | | 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb2&tanDups=pack&gap=dense&position=chrIII:126724-127358 chrIII:126724-127358] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb2 plot cb2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb2 plot cb2] | ||
|- | |- | ||
| | | 103 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb3 cb3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb3 cb3] | ||
Line 1,383: | Line 1,495: | ||
| style='text-align:right'| 568.5 | | style='text-align:right'| 568.5 | ||
| style='text-align:right'| 99618994 | | style='text-align:right'| 99618994 | ||
| 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb3&tanDups=pack&position=chrIII:11646590-11647224 chrIII:11646590-11647224] | | 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb3&tanDups=pack&gap=dense&position=chrIII:11646590-11647224 chrIII:11646590-11647224] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb3 plot cb3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb3 plot cb3] | ||
|- | |- | ||
| | | 104 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4] | ||
Line 1,397: | Line 1,509: | ||
| style='text-align:right'| 578 | | style='text-align:right'| 578 | ||
| style='text-align:right'| 100960462 | | style='text-align:right'| 100960462 | ||
| 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4&tanDups=pack&position=chrIII:76433-77067 chrIII:76433-77067] | | 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4&tanDups=pack&gap=dense&position=chrIII:76433-77067 chrIII:76433-77067] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb4 plot cb4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cb4 plot cb4] | ||
|- | |- | ||
| | | 105 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce10 ce10] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce10 ce10] | ||
Line 1,411: | Line 1,523: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82769023 | | style='text-align:right'| 82769023 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce10&tanDups=pack&position=chrIV:5554976-5557976 chrIV:5554976-5557976] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce10&tanDups=pack&gap=dense&position=chrIV:5554976-5557976 chrIV:5554976-5557976] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce10 plot ce10] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce10 plot ce10] | ||
|- | |- | ||
| | | 106 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11] | ||
Line 1,425: | Line 1,537: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82800067 | | style='text-align:right'| 82800067 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11&tanDups=pack&position=chrIV:5554985-5557985 chrIV:5554985-5557985] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11&tanDups=pack&gap=dense&position=chrIV:5554985-5557985 chrIV:5554985-5557985] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce11 plot ce11] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce11 plot ce11] | ||
|- | |- | ||
| | | 107 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce2 ce2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce2 ce2] | ||
Line 1,439: | Line 1,551: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82752389 | | style='text-align:right'| 82752389 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce2&tanDups=pack&position=chrIV:5554978-5557978 chrIV:5554978-5557978] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce2&tanDups=pack&gap=dense&position=chrIV:5554978-5557978 chrIV:5554978-5557978] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce2 plot ce2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce2 plot ce2] | ||
|- | |- | ||
| | | 108 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce3 ce3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce3 ce3] | ||
Line 1,453: | Line 1,565: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82752398 | | style='text-align:right'| 82752398 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce3&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce3&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce3 plot ce3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce3 plot ce3] | ||
|- | |- | ||
| | | 109 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce4 ce4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce4 ce4] | ||
Line 1,467: | Line 1,579: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82743753 | | style='text-align:right'| 82743753 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce4&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce4&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce4 plot ce4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce4 plot ce4] | ||
|- | |- | ||
| | | 110 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce5 ce5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce5 ce5] | ||
Line 1,481: | Line 1,593: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82743927 | | style='text-align:right'| 82743927 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce5&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce5&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce5 plot ce5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce5 plot ce5] | ||
|- | |- | ||
| | | 111 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce6 ce6] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce6 ce6] | ||
Line 1,495: | Line 1,607: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82743927 | | style='text-align:right'| 82743927 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce6&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce6&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce6 plot ce6] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce6 plot ce6] | ||
|- | |- | ||
| | | 112 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce7 ce7] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce7 ce7] | ||
Line 1,509: | Line 1,621: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82769007 | | style='text-align:right'| 82769007 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce7&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce7&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce7 plot ce7] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce7 plot ce7] | ||
|- | |- | ||
| | | 113 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce8 ce8] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce8 ce8] | ||
Line 1,523: | Line 1,635: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82769007 | | style='text-align:right'| 82769007 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce8&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce8&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce8 plot ce8] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce8 plot ce8] | ||
|- | |- | ||
| | | 114 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce9 ce9] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce9 ce9] | ||
Line 1,537: | Line 1,649: | ||
| style='text-align:right'| 427 | | style='text-align:right'| 427 | ||
| style='text-align:right'| 82769007 | | style='text-align:right'| 82769007 | ||
| 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce9&tanDups=pack&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | | 1500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce9&tanDups=pack&gap=dense&position=chrIV:5554972-5557972 chrIV:5554972-5557972] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce9 plot ce9] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ce9 plot ce9] | ||
|- | |- | ||
| | | 115 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1] | ||
Line 1,551: | Line 1,663: | ||
| style='text-align:right'| 7694 | | style='text-align:right'| 7694 | ||
| style='text-align:right'| 1503937586 | | style='text-align:right'| 1503937586 | ||
| 217, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1&tanDups=pack&position=JH767741:19156533-19156967 JH767741:19156533-19156967] | | 217, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1&tanDups=pack&gap=dense&position=JH767741:19156533-19156967 JH767741:19156533-19156967] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cerSim1 plot cerSim1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cerSim1 plot cerSim1] | ||
|- | |- | ||
| | | 116 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1 chaVoc1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1 chaVoc1] | ||
Line 1,565: | Line 1,677: | ||
| style='text-align:right'| 1813 | | style='text-align:right'| 1813 | ||
| style='text-align:right'| 256127930 | | style='text-align:right'| 256127930 | ||
| 1729, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1&tanDups=pack&position=KL408233:1252791-1256250 KL408233:1252791-1256250] | | 1729, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc1&tanDups=pack&gap=dense&position=KL408233:1252791-1256250 KL408233:1252791-1256250] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc1 plot chaVoc1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc1 plot chaVoc1] | ||
|- | |- | ||
| | | 117 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2 chaVoc2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2 chaVoc2] | ||
Line 1,579: | Line 1,691: | ||
| style='text-align:right'| 1812 | | style='text-align:right'| 1812 | ||
| style='text-align:right'| 256095280 | | style='text-align:right'| 256095280 | ||
| 1729, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2&tanDups=pack&position=KL871243:1252791-1256250 KL871243:1252791-1256250] | | 1729, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chaVoc2&tanDups=pack&gap=dense&position=KL871243:1252791-1256250 KL871243:1252791-1256250] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc2 plot chaVoc2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chaVoc2 plot chaVoc2] | ||
|- | |- | ||
| | | 118 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1] | ||
Line 1,593: | Line 1,705: | ||
| style='text-align:right'| 2112 | | style='text-align:right'| 2112 | ||
| style='text-align:right'| 1711904320 | | style='text-align:right'| 1711904320 | ||
| 2073, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1&tanDups=pack&position=KB534909:887250-891396 KB534909:887250-891396] | | 2073, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1&tanDups=pack&gap=dense&position=KB534909:887250-891396 KB534909:887250-891396] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cheMyd1 plot cheMyd1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cheMyd1 plot cheMyd1] | ||
|- | |- | ||
| | | 119 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1] | ||
Line 1,607: | Line 1,719: | ||
| style='text-align:right'| 5673 | | style='text-align:right'| 5673 | ||
| style='text-align:right'| 1154905940 | | style='text-align:right'| 1154905940 | ||
| 274, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1&tanDups=pack&position=JH721868:33430685-33431233 JH721868:33430685-33431233] | | 274, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1&tanDups=pack&gap=dense&position=JH721868:33430685-33431233 JH721868:33430685-33431233] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chiLan1 plot chiLan1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chiLan1 plot chiLan1] | ||
|- | |- | ||
| | | 120 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab1 chlSab1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab1 chlSab1] | ||
Line 1,621: | Line 1,733: | ||
| style='text-align:right'| 4819 | | style='text-align:right'| 4819 | ||
| style='text-align:right'| 6164212406 | | style='text-align:right'| 6164212406 | ||
| 1783, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab1&tanDups=pack&position=chrY:1553648-1557214 chrY:1553648-1557214] | | 1783, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab1&tanDups=pack&gap=dense&position=chrY:1553648-1557214 chrY:1553648-1557214] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlSab1 plot chlSab1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlSab1 plot chlSab1] | ||
|- | |- | ||
| | | 121 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2] | ||
Line 1,635: | Line 1,747: | ||
| style='text-align:right'| 4823 | | style='text-align:right'| 4823 | ||
| style='text-align:right'| 6168422847 | | style='text-align:right'| 6168422847 | ||
| 1783, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2&tanDups=pack&position=chrY:1553648-1557214 chrY:1553648-1557214] | | 1783, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2&tanDups=pack&gap=dense&position=chrY:1553648-1557214 chrY:1553648-1557214] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlSab2 plot chlSab2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlSab2 plot chlSab2] | ||
|- | |- | ||
| | | 122 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1 chlUnd1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1 chlUnd1] | ||
Line 1,649: | Line 1,761: | ||
| style='text-align:right'| 165 | | style='text-align:right'| 165 | ||
| style='text-align:right'| 94696650 | | style='text-align:right'| 94696650 | ||
| 497, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1&tanDups=pack&position=KK750077:105999-106993 KK750077:105999-106993] | | 497, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chlUnd1&tanDups=pack&gap=dense&position=KK750077:105999-106993 KK750077:105999-106993] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlUnd1 plot chlUnd1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chlUnd1 plot chlUnd1] | ||
|- | |- | ||
| | | 123 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1 choHof1] | ||
Line 1,663: | Line 1,775: | ||
| style='text-align:right'| 431 | | style='text-align:right'| 431 | ||
| style='text-align:right'| 262030496 | | style='text-align:right'| 262030496 | ||
| 307, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1&tanDups=pack&position=scaffold_3919:20103-20717 scaffold_3919:20103-20717] | | 307, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=choHof1&tanDups=pack&gap=dense&position=scaffold_3919:20103-20717 scaffold_3919:20103-20717] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=choHof1 plot choHof1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=choHof1 plot choHof1] | ||
|- | |- | ||
| | | 124 | ||
| 2012 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000296735.1/ GCF_000296735.1] | |||
| allpaths v. R42316 HAPLOIDIFY=True | |||
| style='text-align:right'| 805638 | |||
| style='text-align:right'| 33 | |||
| style='text-align:right'| 32771937 | |||
| | |||
| style='text-align:right'| 6438 | |||
| style='text-align:right'| 6141282666 | |||
| 8327, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1&tanDups=pack&gap=dense&position=JH823352:5306275-5322931 JH823352:5306275-5322931] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrAsi1 plot chrAsi1] | |||
|- | |||
| 125 | |||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1 chrPic1] | ||
Line 1,677: | Line 1,803: | ||
| style='text-align:right'| 1275 | | style='text-align:right'| 1275 | ||
| style='text-align:right'| 1210278039 | | style='text-align:right'| 1210278039 | ||
| 255, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1&tanDups=pack&position=JH584700:738019-738529 JH584700:738019-738529] | | 255, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic1&tanDups=pack&gap=dense&position=JH584700:738019-738529 JH584700:738019-738529] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrPic1 plot chrPic1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrPic1 plot chrPic1] | ||
|- | |- | ||
| | | 126 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2] | ||
Line 1,691: | Line 1,817: | ||
| style='text-align:right'| 1246 | | style='text-align:right'| 1246 | ||
| style='text-align:right'| 1347589030 | | style='text-align:right'| 1347589030 | ||
| 269, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2&tanDups=pack&position=chrUn_KK085497v1:1941-2479 chrUn_KK085497v1:1941-2479] | | 269, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2&tanDups=pack&gap=dense&position=chrUn_KK085497v1:1941-2479 chrUn_KK085497v1:1941-2479] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrPic2 plot chrPic2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=chrPic2 plot chrPic2] | ||
|- | |- | ||
| | | 127 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci1 ci1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci1 ci1] | ||
Line 1,705: | Line 1,831: | ||
| style='text-align:right'| 626 | | style='text-align:right'| 626 | ||
| style='text-align:right'| 122189601 | | style='text-align:right'| 122189601 | ||
| 486, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci1&tanDups=pack&position=Scaffold_604:30085-31057 Scaffold_604:30085-31057] | | 486, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci1&tanDups=pack&gap=dense&position=Scaffold_604:30085-31057 Scaffold_604:30085-31057] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci1 plot ci1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci1 plot ci1] | ||
|- | |- | ||
| | | 128 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci2 ci2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci2 ci2] | ||
Line 1,719: | Line 1,845: | ||
| style='text-align:right'| 1961 | | style='text-align:right'| 1961 | ||
| style='text-align:right'| 566064667 | | style='text-align:right'| 566064667 | ||
| 358, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci2&tanDups=pack&position=scaffold_83:159982-160698 scaffold_83:159982-160698] | | 358, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci2&tanDups=pack&gap=dense&position=scaffold_83:159982-160698 scaffold_83:159982-160698] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci2 plot ci2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci2 plot ci2] | ||
|- | |- | ||
| | | 129 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci3 ci3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci3 ci3] | ||
Line 1,733: | Line 1,859: | ||
| style='text-align:right'| 692 | | style='text-align:right'| 692 | ||
| style='text-align:right'| 149951145 | | style='text-align:right'| 149951145 | ||
| 486, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci3&tanDups=pack&position=chrUn_NW_004190340v1:65099-66071 chrUn_NW_004190340v1:65099-66071] | | 486, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ci3&tanDups=pack&gap=dense&position=chrUn_NW_004190340v1:65099-66071 chrUn_NW_004190340v1:65099-66071] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci3 plot ci3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ci3 plot ci3] | ||
|- | |- | ||
| | | 130 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav1 cioSav1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav1 cioSav1] | ||
Line 1,747: | Line 1,873: | ||
| style='text-align:right'| 2503 | | style='text-align:right'| 2503 | ||
| style='text-align:right'| 618224769 | | style='text-align:right'| 618224769 | ||
| 189, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav1&tanDups=pack&position=ps_297:30448-30826 ps_297:30448-30826] | | 189, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav1&tanDups=pack&gap=dense&position=ps_297:30448-30826 ps_297:30448-30826] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav1 plot cioSav1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav1 plot cioSav1] | ||
|- | |- | ||
| | | 131 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav2 cioSav2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav2 cioSav2] | ||
Line 1,761: | Line 1,887: | ||
| style='text-align:right'| 2875 | | style='text-align:right'| 2875 | ||
| style='text-align:right'| 819500559 | | style='text-align:right'| 819500559 | ||
| 280, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav2&tanDups=pack&position=reftig_238:125039-125599 reftig_238:125039-125599] | | 280, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cioSav2&tanDups=pack&gap=dense&position=reftig_238:125039-125599 reftig_238:125039-125599] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav2 plot cioSav2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cioSav2 plot cioSav2] | ||
|- | |- | ||
| | | 132 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colAng1 colAng1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colAng1 colAng1] | ||
Line 1,775: | Line 1,901: | ||
| style='text-align:right'| 6816 | | style='text-align:right'| 6816 | ||
| style='text-align:right'| 5701906030 | | style='text-align:right'| 5701906030 | ||
| 219, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colAng1&tanDups=pack&position=NW_012114455v1:1212718-1213156 NW_012114455v1:1212718-1213156] | | 219, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colAng1&tanDups=pack&gap=dense&position=NW_012114455v1:1212718-1213156 NW_012114455v1:1212718-1213156] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colAng1 plot colAng1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colAng1 plot colAng1] | ||
|- | |- | ||
| | | 133 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1] | ||
Line 1,789: | Line 1,915: | ||
| style='text-align:right'| 112 | | style='text-align:right'| 112 | ||
| style='text-align:right'| 419571584 | | style='text-align:right'| 419571584 | ||
| 3080, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1&tanDups=pack&position=KB375367:1029739-1035900 KB375367:1029739-1035900] | | 3080, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1&tanDups=pack&gap=dense&position=KB375367:1029739-1035900 KB375367:1029739-1035900] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colLiv1 plot colLiv1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colLiv1 plot colLiv1] | ||
|- | |- | ||
| | | 134 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colStr1 colStr1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colStr1 colStr1] | ||
Line 1,803: | Line 1,929: | ||
| style='text-align:right'| 131 | | style='text-align:right'| 131 | ||
| style='text-align:right'| 154687137 | | style='text-align:right'| 154687137 | ||
| 309, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colStr1&tanDups=pack&position=KK533057:6873-7491 KK533057:6873-7491] | | 309, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=colStr1&tanDups=pack&gap=dense&position=KK533057:6873-7491 KK533057:6873-7491] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colStr1 plot colStr1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=colStr1 plot colStr1] | ||
|- | |- | ||
| | | 135 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1] | ||
Line 1,817: | Line 1,943: | ||
| style='text-align:right'| 7807 | | style='text-align:right'| 7807 | ||
| style='text-align:right'| 2109955223 | | style='text-align:right'| 2109955223 | ||
| 265, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1&tanDups=pack&position=JH655888:40209348-40209878 JH655888:40209348-40209878] | | 265, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1&tanDups=pack&gap=dense&position=JH655888:40209348-40209878 JH655888:40209348-40209878] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=conCri1 plot conCri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=conCri1 plot conCri1] | ||
|- | |- | ||
| | | 136 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corBra1 corBra1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corBra1 corBra1] | ||
Line 1,831: | Line 1,957: | ||
| style='text-align:right'| 297 | | style='text-align:right'| 297 | ||
| style='text-align:right'| 248570100 | | style='text-align:right'| 248570100 | ||
| 1583, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corBra1&tanDups=pack&position=KK718913:5901493-5904659 KK718913:5901493-5904659] | | 1583, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corBra1&tanDups=pack&gap=dense&position=KK718913:5901493-5904659 KK718913:5901493-5904659] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corBra1 plot corBra1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corBra1 plot corBra1] | ||
|- | |- | ||
| | | 137 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corCor1 corCor1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corCor1 corCor1] | ||
Line 1,845: | Line 1,971: | ||
| style='text-align:right'| 370 | | style='text-align:right'| 370 | ||
| style='text-align:right'| 184023111 | | style='text-align:right'| 184023111 | ||
| 1935, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corCor1&tanDups=pack&position=KL997525:15617964-15621834 KL997525:15617964-15621834] | | 1935, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=corCor1&tanDups=pack&gap=dense&position=KL997525:15617964-15621834 KL997525:15617964-15621834] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corCor1 plot corCor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=corCor1 plot corCor1] | ||
|- | |- | ||
| | | 138 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cotJap1 cotJap1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cotJap1 cotJap1] | ||
Line 1,859: | Line 1,985: | ||
| style='text-align:right'| 75 | | style='text-align:right'| 75 | ||
| style='text-align:right'| 2914174 | | style='text-align:right'| 2914174 | ||
| 214, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cotJap1&tanDups=pack&position=DF262918:84572-85000 DF262918:84572-85000] | | 214, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cotJap1&tanDups=pack&gap=dense&position=DF262918:84572-85000 DF262918:84572-85000] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cotJap1 plot cotJap1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cotJap1 plot cotJap1] | ||
|- | |- | ||
| | | 139 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1] | ||
Line 1,873: | Line 1,999: | ||
| style='text-align:right'| 4676 | | style='text-align:right'| 4676 | ||
| style='text-align:right'| 2562035140 | | style='text-align:right'| 2562035140 | ||
| 2419, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1&tanDups=pack&position=KE383702:1200830-1205668 KE383702:1200830-1205668] | | 2419, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1&tanDups=pack&gap=dense&position=KE383702:1200830-1205668 KE383702:1200830-1205668] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=criGri1 plot criGri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=criGri1 plot criGri1] | ||
|- | |- | ||
| | | 140 | ||
| 2017 | | 2017 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1 criGriChoV1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1 criGriChoV1] | ||
Line 1,887: | Line 2,013: | ||
| style='text-align:right'| 3409 | | style='text-align:right'| 3409 | ||
| style='text-align:right'| 2361128543 | | style='text-align:right'| 2361128543 | ||
| 2346, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1&tanDups=pack&position=NW_003614503v1:231537-236229 NW_003614503v1:231537-236229] | | 2346, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGriChoV1&tanDups=pack&gap=dense&position=NW_003614503v1:231537-236229 NW_003614503v1:231537-236229] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=criGriChoV1 plot criGriChoV1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=criGriChoV1 plot criGriChoV1] | ||
|- | |- | ||
| | | 141 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cucCan1 cucCan1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cucCan1 cucCan1] | ||
Line 1,901: | Line 2,027: | ||
| style='text-align:right'| 2142 | | style='text-align:right'| 2142 | ||
| style='text-align:right'| 633238955 | | style='text-align:right'| 633238955 | ||
| 2278, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cucCan1&tanDups=pack&position=KL448309:4464943-4469499 KL448309:4464943-4469499] | | 2278, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cucCan1&tanDups=pack&gap=dense&position=KL448309:4464943-4469499 KL448309:4464943-4469499] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cucCan1 plot cucCan1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cucCan1 plot cucCan1] | ||
|- | |- | ||
| | | 142 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cynSem1 cynSem1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cynSem1 cynSem1] | ||
Line 1,915: | Line 2,041: | ||
| style='text-align:right'| 261 | | style='text-align:right'| 261 | ||
| style='text-align:right'| 184971677 | | style='text-align:right'| 184971677 | ||
| 1536, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cynSem1&tanDups=pack&position=chr1:16715796-16718868 chr1:16715796-16718868] | | 1536, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cynSem1&tanDups=pack&gap=dense&position=chr1:16715796-16718868 chr1:16715796-16718868] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cynSem1 plot cynSem1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cynSem1 plot cynSem1] | ||
|- | |- | ||
| | | 143 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cypVar1 cypVar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cypVar1 cypVar1] | ||
Line 1,929: | Line 2,055: | ||
| style='text-align:right'| 1299 | | style='text-align:right'| 1299 | ||
| style='text-align:right'| 502219020 | | style='text-align:right'| 502219020 | ||
| 2138, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cypVar1&tanDups=pack&position=KL652705:564642-568918 KL652705:564642-568918] | | 2138, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cypVar1&tanDups=pack&gap=dense&position=KL652705:564642-568918 KL652705:564642-568918] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cypVar1 plot cypVar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=cypVar1 plot cypVar1] | ||
|- | |- | ||
| | | 144 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10] | ||
Line 1,943: | Line 2,069: | ||
| style='text-align:right'| 1138 | | style='text-align:right'| 1138 | ||
| style='text-align:right'| 3506165088 | | style='text-align:right'| 3506165088 | ||
| 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10&tanDups=pack&position=chr7:19536660-19538318 chr7:19536660-19538318] | | 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10&tanDups=pack&gap=dense&position=chr7:19536660-19538318 chr7:19536660-19538318] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer10 plot danRer10] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer10 plot danRer10] | ||
|- | |- | ||
| | | 145 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer4 danRer4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer4 danRer4] | ||
Line 1,957: | Line 2,083: | ||
| style='text-align:right'| 1483 | | style='text-align:right'| 1483 | ||
| style='text-align:right'| -5209059568647030784 | | style='text-align:right'| -5209059568647030784 | ||
| 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer4&tanDups=pack&position=chr7:22863126-22864784 chr7:22863126-22864784] | | 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer4&tanDups=pack&gap=dense&position=chr7:22863126-22864784 chr7:22863126-22864784] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer4 plot danRer4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer4 plot danRer4] | ||
|- | |- | ||
| | | 146 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5 danRer5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5 danRer5] | ||
Line 1,971: | Line 2,097: | ||
| style='text-align:right'| 1103 | | style='text-align:right'| 1103 | ||
| style='text-align:right'| 3637100049 | | style='text-align:right'| 3637100049 | ||
| 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5&tanDups=pack&position=chr7:21951036-21952694 chr7:21951036-21952694] | | 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer5&tanDups=pack&gap=dense&position=chr7:21951036-21952694 chr7:21951036-21952694] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer5 plot danRer5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer5 plot danRer5] | ||
|- | |- | ||
| | | 147 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6 danRer6] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6 danRer6] | ||
Line 1,985: | Line 2,111: | ||
| style='text-align:right'| 1381 | | style='text-align:right'| 1381 | ||
| style='text-align:right'| 4517471825 | | style='text-align:right'| 4517471825 | ||
| 2083, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6&tanDups=pack&position=chr10:31284766-31288932 chr10:31284766-31288932] | | 2083, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer6&tanDups=pack&gap=dense&position=chr10:31284766-31288932 chr10:31284766-31288932] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer6 plot danRer6] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer6 plot danRer6] | ||
|- | |- | ||
| | | 148 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7] | ||
Line 1,999: | Line 2,125: | ||
| style='text-align:right'| 1289 | | style='text-align:right'| 1289 | ||
| style='text-align:right'| 3925402743 | | style='text-align:right'| 3925402743 | ||
| 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7&tanDups=pack&position=chr7:20946224-20947882 chr7:20946224-20947882] | | 829, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7&tanDups=pack&gap=dense&position=chr7:20946224-20947882 chr7:20946224-20947882] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer7 plot danRer7] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=danRer7 plot danRer7] | ||
|- | |- | ||
| | | 149 | ||
| 2005 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov1 dasNov1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 154605 | |||
| style='text-align:right'| 37 | |||
| style='text-align:right'| 7624828 | |||
| | |||
| style='text-align:right'| 1001 | |||
| style='text-align:right'| 335128473 | |||
| 306, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov1&tanDups=pack&gap=dense&position=scaffold_52384:6155-6767 scaffold_52384:6155-6767] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dasNov1 plot dasNov1] | |||
|- | |||
| 150 | |||
| 2008 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2 dasNov2] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 208970 | |||
| style='text-align:right'| 39 | |||
| style='text-align:right'| 11666796 | |||
| | |||
| style='text-align:right'| 2156 | |||
| style='text-align:right'| 635204397 | |||
| 306, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov2&tanDups=pack&gap=dense&position=scaffold_34025:7890-8502 scaffold_34025:7890-8502] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dasNov2 plot dasNov2] | |||
|- | |||
| 151 | |||
| 2012 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000208655.1/ GCF_000208655.1] | |||
| Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill | |||
| style='text-align:right'| 482246 | |||
| style='text-align:right'| 37 | |||
| style='text-align:right'| 24275809 | |||
| | |||
| style='text-align:right'| 3870 | |||
| style='text-align:right'| 2851995366 | |||
| 1375, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3&tanDups=pack&gap=dense&position=JH574868:466920-469670 JH574868:466920-469670] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dasNov3 plot dasNov3] | |||
|- | |||
| 152 | |||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1 dicLab1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1 dicLab1] | ||
Line 2,013: | Line 2,181: | ||
| style='text-align:right'| 924 | | style='text-align:right'| 924 | ||
| style='text-align:right'| 691437386 | | style='text-align:right'| 691437386 | ||
| 841, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1&tanDups=pack&position=HG916851:32290203-32291885 HG916851:32290203-32291885] | | 841, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dicLab1&tanDups=pack&gap=dense&position=HG916851:32290203-32291885 HG916851:32290203-32291885] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dicLab1 plot dicLab1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dicLab1 plot dicLab1] | ||
|- | |- | ||
| | | 153 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1 dipOrd1] | ||
Line 2,027: | Line 2,195: | ||
| style='text-align:right'| 2185 | | style='text-align:right'| 2185 | ||
| style='text-align:right'| 7963556509 | | style='text-align:right'| 7963556509 | ||
| 183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1&tanDups=pack&position=scaffold_30074:4167-4533 scaffold_30074:4167-4533] | | 183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dipOrd1&tanDups=pack&gap=dense&position=scaffold_30074:4167-4533 scaffold_30074:4167-4533] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dipOrd1 plot dipOrd1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dipOrd1 plot dipOrd1] | ||
|- | |- | ||
| | | 154 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1 dirImm1] | ||
Line 2,041: | Line 2,209: | ||
| style='text-align:right'| 58 | | style='text-align:right'| 58 | ||
| style='text-align:right'| 1820327 | | style='text-align:right'| 1820327 | ||
| 1613, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1&tanDups=pack&position=nDi_2_2_scaf00284:19002-22228 nDi_2_2_scaf00284:19002-22228] | | 1613, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dirImm1&tanDups=pack&gap=dense&position=nDi_2_2_scaf00284:19002-22228 nDi_2_2_scaf00284:19002-22228] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dirImm1 plot dirImm1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dirImm1 plot dirImm1] | ||
|- | |- | ||
| | | 155 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1 dm1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1 dm1] | ||
Line 2,055: | Line 2,223: | ||
| style='text-align:right'| 3445 | | style='text-align:right'| 3445 | ||
| style='text-align:right'| 60460276 | | style='text-align:right'| 60460276 | ||
| 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1&tanDups=pack&position=chr2L:1894810-1902575 chr2L:1894810-1902575] | | 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm1&tanDups=pack&gap=dense&position=chr2L:1894810-1902575 chr2L:1894810-1902575] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm1 plot dm1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm1 plot dm1] | ||
|- | |- | ||
| | | 156 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2 dm2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2 dm2] | ||
Line 2,069: | Line 2,237: | ||
| style='text-align:right'| 3723 | | style='text-align:right'| 3723 | ||
| style='text-align:right'| 67342596 | | style='text-align:right'| 67342596 | ||
| 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2&tanDups=pack&position=chr2L:1893145-1900910 chr2L:1893145-1900910] | | 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm2&tanDups=pack&gap=dense&position=chr2L:1893145-1900910 chr2L:1893145-1900910] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm2 plot dm2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm2 plot dm2] | ||
|- | |- | ||
| | | 157 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3 dm3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3 dm3] | ||
Line 2,083: | Line 2,251: | ||
| style='text-align:right'| 2412 | | style='text-align:right'| 2412 | ||
| style='text-align:right'| 622002007 | | style='text-align:right'| 622002007 | ||
| 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3&tanDups=pack&position=chr2L:1893145-1900910 chr2L:1893145-1900910] | | 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm3&tanDups=pack&gap=dense&position=chr2L:1893145-1900910 chr2L:1893145-1900910] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm3 plot dm3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm3 plot dm3] | ||
|- | |- | ||
| | | 158 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6] | ||
Line 2,097: | Line 2,265: | ||
| style='text-align:right'| 3448 | | style='text-align:right'| 3448 | ||
| style='text-align:right'| 254474999 | | style='text-align:right'| 254474999 | ||
| 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6&tanDups=pack&position=chr2L:1893145-1900910 chr2L:1893145-1900910] | | 3882, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6&tanDups=pack&gap=dense&position=chr2L:1893145-1900910 chr2L:1893145-1900910] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm6 plot dm6] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dm6 plot dm6] | ||
|- | |- | ||
| | | 159 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2 dp2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2 dp2] | ||
Line 2,111: | Line 2,279: | ||
| style='text-align:right'| 926 | | style='text-align:right'| 926 | ||
| style='text-align:right'| 42217528 | | style='text-align:right'| 42217528 | ||
| 227, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2&tanDups=pack&position=Contig7446_Contig2444:1979445-1979899 Contig7446_Contig2444:1979445-1979899] | | 227, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp2&tanDups=pack&gap=dense&position=Contig7446_Contig2444:1979445-1979899 Contig7446_Contig2444:1979445-1979899] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp2 plot dp2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp2 plot dp2] | ||
|- | |- | ||
| | | 160 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3 dp3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3 dp3] | ||
Line 2,125: | Line 2,293: | ||
| style='text-align:right'| 1239 | | style='text-align:right'| 1239 | ||
| style='text-align:right'| 62703720 | | style='text-align:right'| 62703720 | ||
| 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3&tanDups=pack&position=chrU:9357988-9358612 chrU:9357988-9358612] | | 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp3&tanDups=pack&gap=dense&position=chrU:9357988-9358612 chrU:9357988-9358612] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp3 plot dp3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp3 plot dp3] | ||
|- | |- | ||
| | | 161 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4 dp4] | ||
Line 2,139: | Line 2,307: | ||
| style='text-align:right'| 2437 | | style='text-align:right'| 2437 | ||
| style='text-align:right'| 228127096 | | style='text-align:right'| 228127096 | ||
| 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4&tanDups=pack&position=Unknown_singleton_2460:32411-33035 Unknown_singleton_2460:32411-33035] | | 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dp4&tanDups=pack&gap=dense&position=Unknown_singleton_2460:32411-33035 Unknown_singleton_2460:32411-33035] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp4 plot dp4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=dp4 plot dp4] | ||
|- | |- | ||
| | | 162 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1 droAlb1] | ||
Line 2,153: | Line 2,321: | ||
| style='text-align:right'| 70 | | style='text-align:right'| 70 | ||
| style='text-align:right'| 35343627 | | style='text-align:right'| 35343627 | ||
| 76, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1&tanDups=pack&position=JH853217:889-1041 JH853217:889-1041] | | 76, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAlb1&tanDups=pack&gap=dense&position=JH853217:889-1041 JH853217:889-1041] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAlb1 plot droAlb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAlb1 plot droAlb1] | ||
|- | |- | ||
| | | 163 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1 droAna1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1 droAna1] | ||
Line 2,167: | Line 2,335: | ||
| style='text-align:right'| 697 | | style='text-align:right'| 697 | ||
| style='text-align:right'| 196198368 | | style='text-align:right'| 196198368 | ||
| 572, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1&tanDups=pack&position=2446670:645-1789 2446670:645-1789] | | 572, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna1&tanDups=pack&gap=dense&position=2446670:645-1789 2446670:645-1789] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna1 plot droAna1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna1 plot droAna1] | ||
|- | |- | ||
| | | 164 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2 droAna2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2 droAna2] | ||
Line 2,181: | Line 2,349: | ||
| style='text-align:right'| 918 | | style='text-align:right'| 918 | ||
| style='text-align:right'| 748771139 | | style='text-align:right'| 748771139 | ||
| 572, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2&tanDups=pack&position=scaffold_13499:1095908-1097052 scaffold_13499:1095908-1097052] | | 572, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna2&tanDups=pack&gap=dense&position=scaffold_13499:1095908-1097052 scaffold_13499:1095908-1097052] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna2 plot droAna2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna2 plot droAna2] | ||
|- | |- | ||
| | | 165 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3 droAna3] | ||
Line 2,195: | Line 2,363: | ||
| style='text-align:right'| 927 | | style='text-align:right'| 927 | ||
| style='text-align:right'| 745835855 | | style='text-align:right'| 745835855 | ||
| 572, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3&tanDups=pack&position=scaffold_13499:1092668-1093812 scaffold_13499:1092668-1093812] | | 572, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droAna3&tanDups=pack&gap=dense&position=scaffold_13499:1092668-1093812 scaffold_13499:1092668-1093812] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna3 plot droAna3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droAna3 plot droAna3] | ||
|- | |- | ||
| | | 166 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2 droBia2] | ||
Line 2,209: | Line 2,377: | ||
| style='text-align:right'| 2591 | | style='text-align:right'| 2591 | ||
| style='text-align:right'| 175612579 | | style='text-align:right'| 175612579 | ||
| 2241, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2&tanDups=pack&position=AFFD02006372:54233-58717 AFFD02006372:54233-58717] | | 2241, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBia2&tanDups=pack&gap=dense&position=AFFD02006372:54233-58717 AFFD02006372:54233-58717] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBia2 plot droBia2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBia2 plot droBia2] | ||
|- | |- | ||
| | | 167 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2 droBip2] | ||
Line 2,223: | Line 2,391: | ||
| style='text-align:right'| 1371 | | style='text-align:right'| 1371 | ||
| style='text-align:right'| 204354268 | | style='text-align:right'| 204354268 | ||
| 179, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2&tanDups=pack&position=KB463958:131929-132287 KB463958:131929-132287] | | 179, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droBip2&tanDups=pack&gap=dense&position=KB463958:131929-132287 KB463958:131929-132287] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBip2 plot droBip2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droBip2 plot droBip2] | ||
|- | |- | ||
| | | 168 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2 droEle2] | ||
Line 2,237: | Line 2,405: | ||
| style='text-align:right'| 2187 | | style='text-align:right'| 2187 | ||
| style='text-align:right'| 135919965 | | style='text-align:right'| 135919965 | ||
| 270, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2&tanDups=pack&position=KB458613:1953986-1954526 KB458613:1953986-1954526] | | 270, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEle2&tanDups=pack&gap=dense&position=KB458613:1953986-1954526 KB458613:1953986-1954526] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEle2 plot droEle2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEle2 plot droEle2] | ||
|- | |- | ||
| | | 169 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1 droEre1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1 droEre1] | ||
Line 2,251: | Line 2,419: | ||
| style='text-align:right'| 674 | | style='text-align:right'| 674 | ||
| style='text-align:right'| 191777516 | | style='text-align:right'| 191777516 | ||
| 359, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1&tanDups=pack&position=scaffold_1301:371-1089 scaffold_1301:371-1089] | | 359, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre1&tanDups=pack&gap=dense&position=scaffold_1301:371-1089 scaffold_1301:371-1089] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre1 plot droEre1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre1 plot droEre1] | ||
|- | |- | ||
| | | 170 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2 droEre2] | ||
Line 2,265: | Line 2,433: | ||
| style='text-align:right'| 676 | | style='text-align:right'| 676 | ||
| style='text-align:right'| 190524603 | | style='text-align:right'| 190524603 | ||
| 359, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2&tanDups=pack&position=scaffold_1301:371-1089 scaffold_1301:371-1089] | | 359, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEre2&tanDups=pack&gap=dense&position=scaffold_1301:371-1089 scaffold_1301:371-1089] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre2 plot droEre2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEre2 plot droEre2] | ||
|- | |- | ||
| | | 171 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2 droEug2] | ||
Line 2,279: | Line 2,447: | ||
| style='text-align:right'| 1518 | | style='text-align:right'| 1518 | ||
| style='text-align:right'| 181127987 | | style='text-align:right'| 181127987 | ||
| 141, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2&tanDups=pack&position=KB464979:6084-6366 KB464979:6084-6366] | | 141, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droEug2&tanDups=pack&gap=dense&position=KB464979:6084-6366 KB464979:6084-6366] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEug2 plot droEug2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droEug2 plot droEug2] | ||
|- | |- | ||
| | | 172 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2 droFic2] | ||
Line 2,293: | Line 2,461: | ||
| style='text-align:right'| 2380.5 | | style='text-align:right'| 2380.5 | ||
| style='text-align:right'| 83742114 | | style='text-align:right'| 83742114 | ||
| 190, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2&tanDups=pack&position=AFFG02001364:4041-4421 AFFG02001364:4041-4421] | | 190, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droFic2&tanDups=pack&gap=dense&position=AFFG02001364:4041-4421 AFFG02001364:4041-4421] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droFic2 plot droFic2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droFic2 plot droFic2] | ||
|- | |- | ||
| | | 173 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1 droGri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1 droGri1] | ||
Line 2,307: | Line 2,475: | ||
| style='text-align:right'| 509 | | style='text-align:right'| 509 | ||
| style='text-align:right'| 538034457 | | style='text-align:right'| 538034457 | ||
| 491, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1&tanDups=pack&position=scaffold_2211:899-1881 scaffold_2211:899-1881] | | 491, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri1&tanDups=pack&gap=dense&position=scaffold_2211:899-1881 scaffold_2211:899-1881] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri1 plot droGri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri1 plot droGri1] | ||
|- | |- | ||
| | | 174 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2 droGri2] | ||
Line 2,321: | Line 2,489: | ||
| style='text-align:right'| 522 | | style='text-align:right'| 522 | ||
| style='text-align:right'| 418546843 | | style='text-align:right'| 418546843 | ||
| 188, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2&tanDups=pack&position=scaffold_6592:1167-1543 scaffold_6592:1167-1543] | | 188, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droGri2&tanDups=pack&gap=dense&position=scaffold_6592:1167-1543 scaffold_6592:1167-1543] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri2 plot droGri2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droGri2 plot droGri2] | ||
|- | |- | ||
| | | 175 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2 droKik2] | ||
Line 2,335: | Line 2,503: | ||
| style='text-align:right'| 1533.5 | | style='text-align:right'| 1533.5 | ||
| style='text-align:right'| 112074726 | | style='text-align:right'| 112074726 | ||
| 117, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2&tanDups=pack&position=KB459586:778466-778700 KB459586:778466-778700] | | 117, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droKik2&tanDups=pack&gap=dense&position=KB459586:778466-778700 KB459586:778466-778700] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droKik2 plot droKik2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droKik2 plot droKik2] | ||
|- | |- | ||
| | | 176 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2 droMir2] | ||
Line 2,349: | Line 2,517: | ||
| style='text-align:right'| 1747 | | style='text-align:right'| 1747 | ||
| style='text-align:right'| 75101816 | | style='text-align:right'| 75101816 | ||
| 140, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2&tanDups=pack&position=chr2:3040735-3041015 chr2:3040735-3041015] | | 140, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMir2&tanDups=pack&gap=dense&position=chr2:3040735-3041015 chr2:3040735-3041015] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMir2 plot droMir2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMir2 plot droMir2] | ||
|- | |- | ||
| | | 177 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1 droMoj1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1 droMoj1] | ||
Line 2,363: | Line 2,531: | ||
| style='text-align:right'| 310 | | style='text-align:right'| 310 | ||
| style='text-align:right'| 78711524 | | style='text-align:right'| 78711524 | ||
| 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1&tanDups=pack&position=contig_34282:247-697 contig_34282:247-697] | | 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj1&tanDups=pack&gap=dense&position=contig_34282:247-697 contig_34282:247-697] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj1 plot droMoj1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj1 plot droMoj1] | ||
|- | |- | ||
| | | 178 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2 droMoj2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2 droMoj2] | ||
Line 2,377: | Line 2,545: | ||
| style='text-align:right'| 1086 | | style='text-align:right'| 1086 | ||
| style='text-align:right'| 363630258 | | style='text-align:right'| 363630258 | ||
| 202, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2&tanDups=pack&position=scaffold_6540:14391223-14391627 scaffold_6540:14391223-14391627] | | 202, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj2&tanDups=pack&gap=dense&position=scaffold_6540:14391223-14391627 scaffold_6540:14391223-14391627] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj2 plot droMoj2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj2 plot droMoj2] | ||
|- | |- | ||
| | | 179 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3 droMoj3] | ||
Line 2,391: | Line 2,559: | ||
| style='text-align:right'| 1114 | | style='text-align:right'| 1114 | ||
| style='text-align:right'| 361818537 | | style='text-align:right'| 361818537 | ||
| 202, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3&tanDups=pack&position=scaffold_6540:14384339-14384743 scaffold_6540:14384339-14384743] | | 202, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droMoj3&tanDups=pack&gap=dense&position=scaffold_6540:14384339-14384743 scaffold_6540:14384339-14384743] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj3 plot droMoj3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droMoj3 plot droMoj3] | ||
|- | |- | ||
| | | 180 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1] | ||
Line 2,405: | Line 2,573: | ||
| style='text-align:right'| 2595 | | style='text-align:right'| 2595 | ||
| style='text-align:right'| 325634621 | | style='text-align:right'| 325634621 | ||
| 580, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1&tanDups=pack&position=super_62:246420-247581 super_62:246420-247581] | | 580, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1&tanDups=pack&gap=dense&position=super_62:246420-247581 super_62:246420-247581] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPer1 plot droPer1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPer1 plot droPer1] | ||
|- | |- | ||
| | | 181 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3 droPse3] | ||
Line 2,419: | Line 2,587: | ||
| style='text-align:right'| 2480 | | style='text-align:right'| 2480 | ||
| style='text-align:right'| 231367590 | | style='text-align:right'| 231367590 | ||
| 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3&tanDups=pack&position=chrUn_CH674897_1:32411-33035 chrUn_CH674897_1:32411-33035] | | 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPse3&tanDups=pack&gap=dense&position=chrUn_CH674897_1:32411-33035 chrUn_CH674897_1:32411-33035] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPse3 plot droPse3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droPse3 plot droPse3] | ||
|- | |- | ||
| | | 182 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2 droRho2] | ||
Line 2,433: | Line 2,601: | ||
| style='text-align:right'| 1672 | | style='text-align:right'| 1672 | ||
| style='text-align:right'| 235074913 | | style='text-align:right'| 235074913 | ||
| 205, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2&tanDups=pack&position=AFPP02028413:1419-1829 AFPP02028413:1419-1829] | | 205, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droRho2&tanDups=pack&gap=dense&position=AFPP02028413:1419-1829 AFPP02028413:1419-1829] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droRho2 plot droRho2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droRho2 plot droRho2] | ||
|- | |- | ||
| | | 183 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1 droSec1] | ||
Line 2,447: | Line 2,615: | ||
| style='text-align:right'| 465 | | style='text-align:right'| 465 | ||
| style='text-align:right'| 177925676 | | style='text-align:right'| 177925676 | ||
| 360, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1&tanDups=pack&position=super_6483:1086-1806 super_6483:1086-1806] | | 360, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSec1&tanDups=pack&gap=dense&position=super_6483:1086-1806 super_6483:1086-1806] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSec1 plot droSec1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSec1 plot droSec1] | ||
|- | |- | ||
| | | 184 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1 droSim1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1 droSim1] | ||
Line 2,461: | Line 2,629: | ||
| style='text-align:right'| 1400 | | style='text-align:right'| 1400 | ||
| style='text-align:right'| 171101666 | | style='text-align:right'| 171101666 | ||
| 217, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1&tanDups=pack&position=chr3R_random:168062-168496 chr3R_random:168062-168496] | | 217, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim1&tanDups=pack&gap=dense&position=chr3R_random:168062-168496 chr3R_random:168062-168496] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim1 plot droSim1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim1 plot droSim1] | ||
|- | |- | ||
| | | 185 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2 droSim2] | ||
Line 2,475: | Line 2,643: | ||
| style='text-align:right'| 466 | | style='text-align:right'| 466 | ||
| style='text-align:right'| 26120972 | | style='text-align:right'| 26120972 | ||
| 217, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2&tanDups=pack&position=chrUn_NW_015496898v1:4674-5108 chrUn_NW_015496898v1:4674-5108] | | 217, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSim2&tanDups=pack&gap=dense&position=chrUn_NW_015496898v1:4674-5108 chrUn_NW_015496898v1:4674-5108] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim2 plot droSim2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSim2 plot droSim2] | ||
|- | |- | ||
| | | 186 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1 droSuz1] | ||
Line 2,489: | Line 2,657: | ||
| style='text-align:right'| 2277 | | style='text-align:right'| 2277 | ||
| style='text-align:right'| 517597655 | | style='text-align:right'| 517597655 | ||
| 4939, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1&tanDups=pack&position=KI419149:2637663-2647541 KI419149:2637663-2647541] | | 4939, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droSuz1&tanDups=pack&gap=dense&position=KI419149:2637663-2647541 KI419149:2637663-2647541] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSuz1 plot droSuz1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droSuz1 plot droSuz1] | ||
|- | |- | ||
| | | 187 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2 droTak2] | ||
Line 2,503: | Line 2,671: | ||
| style='text-align:right'| 2013 | | style='text-align:right'| 2013 | ||
| style='text-align:right'| 202395837 | | style='text-align:right'| 202395837 | ||
| 306, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2&tanDups=pack&position=AFFI02002878:4290-4902 AFFI02002878:4290-4902] | | 306, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droTak2&tanDups=pack&gap=dense&position=AFFI02002878:4290-4902 AFFI02002878:4290-4902] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droTak2 plot droTak2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droTak2 plot droTak2] | ||
|- | |- | ||
| | | 188 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1 droVir1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1 droVir1] | ||
Line 2,517: | Line 2,685: | ||
| style='text-align:right'| 429 | | style='text-align:right'| 429 | ||
| style='text-align:right'| 239695710 | | style='text-align:right'| 239695710 | ||
| 244, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1&tanDups=pack&position=scaffold_0:5707381-5707869 scaffold_0:5707381-5707869] | | 244, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir1&tanDups=pack&gap=dense&position=scaffold_0:5707381-5707869 scaffold_0:5707381-5707869] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir1 plot droVir1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir1 plot droVir1] | ||
|- | |- | ||
| | | 189 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2 droVir2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2 droVir2] | ||
Line 2,531: | Line 2,699: | ||
| style='text-align:right'| 481 | | style='text-align:right'| 481 | ||
| style='text-align:right'| 757905036 | | style='text-align:right'| 757905036 | ||
| 244, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2&tanDups=pack&position=scaffold_13049:18877549-18878037 scaffold_13049:18877549-18878037] | | 244, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir2&tanDups=pack&gap=dense&position=scaffold_13049:18877549-18878037 scaffold_13049:18877549-18878037] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir2 plot droVir2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir2 plot droVir2] | ||
|- | |- | ||
| | | 190 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3 droVir3] | ||
Line 2,545: | Line 2,713: | ||
| style='text-align:right'| 495 | | style='text-align:right'| 495 | ||
| style='text-align:right'| 747769004 | | style='text-align:right'| 747769004 | ||
| 244, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3&tanDups=pack&position=scaffold_13049:18848863-18849351 scaffold_13049:18848863-18849351] | | 244, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droVir3&tanDups=pack&gap=dense&position=scaffold_13049:18848863-18849351 scaffold_13049:18848863-18849351] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir3 plot droVir3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droVir3 plot droVir3] | ||
|- | |- | ||
| | | 191 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1 droWil1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1 droWil1] | ||
Line 2,559: | Line 2,727: | ||
| style='text-align:right'| 1695 | | style='text-align:right'| 1695 | ||
| style='text-align:right'| 472632964 | | style='text-align:right'| 472632964 | ||
| 954, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1&tanDups=pack&position=scaffold_181130:9135849-9137757 scaffold_181130:9135849-9137757] | | 954, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil1&tanDups=pack&gap=dense&position=scaffold_181130:9135849-9137757 scaffold_181130:9135849-9137757] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil1 plot droWil1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil1 plot droWil1] | ||
|- | |- | ||
| | | 192 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2 droWil2] | ||
Line 2,573: | Line 2,741: | ||
| style='text-align:right'| 1695 | | style='text-align:right'| 1695 | ||
| style='text-align:right'| 472142234 | | style='text-align:right'| 472142234 | ||
| 954, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2&tanDups=pack&position=CH964272:9135849-9137757 CH964272:9135849-9137757] | | 954, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droWil2&tanDups=pack&gap=dense&position=CH964272:9135849-9137757 CH964272:9135849-9137757] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil2 plot droWil2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droWil2 plot droWil2] | ||
|- | |- | ||
| | | 193 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1 droYak1] | ||
Line 2,587: | Line 2,755: | ||
| style='text-align:right'| 3752 | | style='text-align:right'| 3752 | ||
| style='text-align:right'| 459910434 | | style='text-align:right'| 459910434 | ||
| 851, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1&tanDups=pack&position=chr3L:24830341-24832043 chr3L:24830341-24832043] | | 851, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak1&tanDups=pack&gap=dense&position=chr3L:24830341-24832043 chr3L:24830341-24832043] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak1 plot droYak1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak1 plot droYak1] | ||
|- | |- | ||
| | | 194 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2 droYak2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2 droYak2] | ||
Line 2,601: | Line 2,769: | ||
| style='text-align:right'| 3518 | | style='text-align:right'| 3518 | ||
| style='text-align:right'| 501527798 | | style='text-align:right'| 501527798 | ||
| 1122, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2&tanDups=pack&position=chrU:731511-733756 chrU:731511-733756] | | 1122, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak2&tanDups=pack&gap=dense&position=chrU:731511-733756 chrU:731511-733756] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak2 plot droYak2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak2 plot droYak2] | ||
|- | |- | ||
| | | 195 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3 droYak3] | ||
Line 2,615: | Line 2,783: | ||
| style='text-align:right'| 2641 | | style='text-align:right'| 2641 | ||
| style='text-align:right'| 404384429 | | style='text-align:right'| 404384429 | ||
| 1122, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3&tanDups=pack&position=chrUn_CH892674_1:731511-733756 chrUn_CH892674_1:731511-733756] | | 1122, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droYak3&tanDups=pack&gap=dense&position=chrUn_CH892674_1:731511-733756 chrUn_CH892674_1:731511-733756] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak3 plot droYak3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=droYak3 plot droYak3] | ||
|- | |- | ||
| | | 198 | ||
| 2005 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1 echTel1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 116281 | |||
| style='text-align:right'| 36 | |||
| style='text-align:right'| 5131198 | |||
| | |||
| style='text-align:right'| 673 | |||
| style='text-align:right'| 256369374 | |||
| 229, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel1&tanDups=pack&gap=dense&position=scaffold_292508:7264-7722 scaffold_292508:7264-7722] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=echTel1 plot echTel1] | |||
|- | |||
| 199 | |||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2] | ||
Line 2,629: | Line 2,811: | ||
| style='text-align:right'| 2860 | | style='text-align:right'| 2860 | ||
| style='text-align:right'| 1049531975 | | style='text-align:right'| 1049531975 | ||
| 345, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2&tanDups=pack&position=JH980443:629844-630535 JH980443:629844-630535] | | 345, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2&tanDups=pack&gap=dense&position=JH980443:629844-630535 JH980443:629844-630535] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=echTel2 plot echTel2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=echTel2 plot echTel2] | ||
|- | |- | ||
| | | 200 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1 egrGar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1 egrGar1] | ||
Line 2,643: | Line 2,825: | ||
| style='text-align:right'| 893 | | style='text-align:right'| 893 | ||
| style='text-align:right'| 271113520 | | style='text-align:right'| 271113520 | ||
| 2791, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1&tanDups=pack&position=KK500861:718810-724392 KK500861:718810-724392] | | 2791, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=egrGar1&tanDups=pack&gap=dense&position=KK500861:718810-724392 KK500861:718810-724392] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=egrGar1 plot egrGar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=egrGar1 plot egrGar1] | ||
|- | |- | ||
| | | 201 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1 eidHel1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1 eidHel1] | ||
Line 2,657: | Line 2,839: | ||
| style='text-align:right'| 126 | | style='text-align:right'| 126 | ||
| style='text-align:right'| 36481318 | | style='text-align:right'| 36481318 | ||
| 7647, 43, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1&tanDups=pack&position=AWHC01288168:1-15337 AWHC01288168:1-15337] | | 7647, 43, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eidHel1&tanDups=pack&gap=dense&position=AWHC01288168:1-15337 AWHC01288168:1-15337] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eidHel1 plot eidHel1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eidHel1 plot eidHel1] | ||
|- | |- | ||
| | | 202 | ||
| 2012 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000299155.1/ GCF_000299155.1] | |||
| allpaths v. R42301 HAPLOIDIFY=True | |||
| style='text-align:right'| 356320 | |||
| style='text-align:right'| 35 | |||
| style='text-align:right'| 16209356 | |||
| | |||
| style='text-align:right'| 6988 | |||
| style='text-align:right'| 2779337445 | |||
| 408, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1&tanDups=pack&gap=dense&position=JH947532:444932-445748 JH947532:444932-445748] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eleEdw1 plot eleEdw1] | |||
|- | |||
| 203 | |||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1] | ||
Line 2,671: | Line 2,867: | ||
| style='text-align:right'| 2177 | | style='text-align:right'| 2177 | ||
| style='text-align:right'| 1173955475 | | style='text-align:right'| 1173955475 | ||
| 211, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1&tanDups=pack&position=JH977672:6077044-6077466 JH977672:6077044-6077466] | | 211, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1&tanDups=pack&gap=dense&position=JH977672:6077044-6077466 JH977672:6077044-6077466] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eptFus1 plot eptFus1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eptFus1 plot eptFus1] | ||
|- | |- | ||
| | | 204 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2] | ||
Line 2,685: | Line 2,881: | ||
| style='text-align:right'| 2842 | | style='text-align:right'| 2842 | ||
| style='text-align:right'| 2161091933 | | style='text-align:right'| 2161091933 | ||
| 526, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2&tanDups=pack&position=chr14:85222625-85223677 chr14:85222625-85223677] | | 526, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2&tanDups=pack&gap=dense&position=chr14:85222625-85223677 chr14:85222625-85223677] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=equCab2 plot equCab2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=equCab2 plot equCab2] | ||
|- | |- | ||
| | | 205 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1 equPrz1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1 equPrz1] | ||
Line 2,699: | Line 2,895: | ||
| style='text-align:right'| 107 | | style='text-align:right'| 107 | ||
| style='text-align:right'| 801082402 | | style='text-align:right'| 801082402 | ||
| 1923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1&tanDups=pack&position=KK950139:433764-437610 KK950139:433764-437610] | | 1923, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equPrz1&tanDups=pack&gap=dense&position=KK950139:433764-437610 KK950139:433764-437610] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=equPrz1 plot equPrz1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=equPrz1 plot equPrz1] | ||
|- | |- | ||
| | | 206 | ||
| 2007 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1 eriEur1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 406856 | |||
| style='text-align:right'| 36 | |||
| style='text-align:right'| 19671809 | |||
| | |||
| style='text-align:right'| 3390 | |||
| style='text-align:right'| 2085450281 | |||
| 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur1&tanDups=pack&gap=dense&position=scaffold_334489:6021-6625 scaffold_334489:6021-6625] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eriEur1 plot eriEur1] | |||
|- | |||
| 207 | |||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2] | ||
Line 2,713: | Line 2,923: | ||
| style='text-align:right'| 7216 | | style='text-align:right'| 7216 | ||
| style='text-align:right'| 6808639747 | | style='text-align:right'| 6808639747 | ||
| 13780, 5, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2&tanDups=pack&position=JH835378:10400-37964 JH835378:10400-37964] | | 13780, 5, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2&tanDups=pack&gap=dense&position=JH835378:10400-37964 JH835378:10400-37964] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eriEur2 plot eriEur2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eriEur2 plot eriEur2] | ||
|- | |- | ||
| | | 208 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1 esoLuc1] | ||
Line 2,727: | Line 2,937: | ||
| style='text-align:right'| 109 | | style='text-align:right'| 109 | ||
| style='text-align:right'| 633934424 | | style='text-align:right'| 633934424 | ||
| 1803, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1&tanDups=pack&position=KL593524:286555-290161 KL593524:286555-290161] | | 1803, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=esoLuc1&tanDups=pack&gap=dense&position=KL593524:286555-290161 KL593524:286555-290161] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=esoLuc1 plot esoLuc1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=esoLuc1 plot esoLuc1] | ||
|- | |- | ||
| | | 209 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13 euaGli13] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13 euaGli13] | ||
Line 2,741: | Line 2,951: | ||
| style='text-align:right'| 981 | | style='text-align:right'| 981 | ||
| style='text-align:right'| 360128068 | | style='text-align:right'| 360128068 | ||
| 95, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13&tanDups=pack&position=4-7:24024058-24024248 4-7:24024058-24024248] | | 95, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=euaGli13&tanDups=pack&gap=dense&position=4-7:24024058-24024248 4-7:24024058-24024248] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=euaGli13 plot euaGli13] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=euaGli13 plot euaGli13] | ||
|- | |- | ||
| | | 210 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1 eurHel1] | ||
Line 2,755: | Line 2,965: | ||
| style='text-align:right'| 3690 | | style='text-align:right'| 3690 | ||
| style='text-align:right'| 271468700 | | style='text-align:right'| 271468700 | ||
| 462, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1&tanDups=pack&position=KK561721:27808-28732 KK561721:27808-28732] | | 462, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eurHel1&tanDups=pack&gap=dense&position=KK561721:27808-28732 KK561721:27808-28732] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eurHel1 plot eurHel1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eurHel1 plot eurHel1] | ||
|- | |- | ||
| | | 211 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13 eutHer13] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13 eutHer13] | ||
Line 2,769: | Line 2,979: | ||
| style='text-align:right'| 1220 | | style='text-align:right'| 1220 | ||
| style='text-align:right'| 345926827 | | style='text-align:right'| 345926827 | ||
| 125, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13&tanDups=pack&position=5-6:21163986-21164236 5-6:21163986-21164236] | | 125, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eutHer13&tanDups=pack&gap=dense&position=5-6:21163986-21164236 5-6:21163986-21164236] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eutHer13 plot eutHer13] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=eutHer13 plot eutHer13] | ||
|- | |- | ||
| | | 212 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1] | ||
Line 2,783: | Line 2,993: | ||
| style='text-align:right'| 144 | | style='text-align:right'| 144 | ||
| style='text-align:right'| 71160661 | | style='text-align:right'| 71160661 | ||
| 1589, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1&tanDups=pack&position=KB397979:787306-790484 KB397979:787306-790484] | | 1589, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1&tanDups=pack&gap=dense&position=KB397979:787306-790484 KB397979:787306-790484] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falChe1 plot falChe1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falChe1 plot falChe1] | ||
|- | |- | ||
| | | 213 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1] | ||
Line 2,797: | Line 3,007: | ||
| style='text-align:right'| 156 | | style='text-align:right'| 156 | ||
| style='text-align:right'| 69981752 | | style='text-align:right'| 69981752 | ||
| 1888, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1&tanDups=pack&position=KB390863:6987566-6991342 KB390863:6987566-6991342] | | 1888, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1&tanDups=pack&gap=dense&position=KB390863:6987566-6991342 KB390863:6987566-6991342] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falPer1 plot falPer1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=falPer1 plot falPer1] | ||
|- | |- | ||
| | | 214 | ||
| 2006 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat1 felCat1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 403441 | |||
| style='text-align:right'| 42 | |||
| style='text-align:right'| 30873956 | |||
| | |||
| style='text-align:right'| 930 | |||
| style='text-align:right'| 1162418824 | |||
| 482, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat1&tanDups=pack&gap=dense&position=scaffold_30190:390-1354 scaffold_30190:390-1354] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat1 plot felCat1] | |||
|- | |||
| 215 | |||
| 2006 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat3 felCat3] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 403441 | |||
| style='text-align:right'| 42 | |||
| style='text-align:right'| 30873956 | |||
| | |||
| style='text-align:right'| 930 | |||
| style='text-align:right'| 1162418824 | |||
| 482, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat3&tanDups=pack&gap=dense&position=scaffold_30190:390-1354 scaffold_30190:390-1354] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat3 plot felCat3] | |||
|- | |||
| 216 | |||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4 felCat4] | ||
Line 2,811: | Line 3,049: | ||
| style='text-align:right'| 3301 | | style='text-align:right'| 3301 | ||
| style='text-align:right'| 2364466223 | | style='text-align:right'| 2364466223 | ||
| 5373, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4&tanDups=pack&position=chrA1:165589032-165599787 chrA1:165589032-165599787] | | 5373, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat4&tanDups=pack&gap=dense&position=chrA1:165589032-165599787 chrA1:165589032-165599787] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat4 plot felCat4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat4 plot felCat4] | ||
|- | |- | ||
| | | 217 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5] | ||
Line 2,825: | Line 3,063: | ||
| style='text-align:right'| 7873 | | style='text-align:right'| 7873 | ||
| style='text-align:right'| 3800500393 | | style='text-align:right'| 3800500393 | ||
| 238, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5&tanDups=pack&position=chrB2:9942275-9942751 chrB2:9942275-9942751] | | 238, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5&tanDups=pack&gap=dense&position=chrB2:9942275-9942751 chrB2:9942275-9942751] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat5 plot felCat5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat5 plot felCat5] | ||
|- | |- | ||
| | | 218 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8] | ||
Line 2,839: | Line 3,077: | ||
| style='text-align:right'| 5064 | | style='text-align:right'| 5064 | ||
| style='text-align:right'| 4215814492 | | style='text-align:right'| 4215814492 | ||
| 482, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8&tanDups=pack&position=chrUn_AANG03063521v1:145-1109 chrUn_AANG03063521v1:145-1109] | | 482, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8&tanDups=pack&gap=dense&position=chrUn_AANG03063521v1:145-1109 chrUn_AANG03063521v1:145-1109] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat8 plot felCat8] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=felCat8 plot felCat8] | ||
|- | |- | ||
| | | 219 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1 fr1] | ||
Line 2,853: | Line 3,091: | ||
| style='text-align:right'| 165 | | style='text-align:right'| 165 | ||
| style='text-align:right'| 124234021 | | style='text-align:right'| 124234021 | ||
| 304, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1&tanDups=pack&position=chrUn:169005183-169005791 chrUn:169005183-169005791] | | 304, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr1&tanDups=pack&gap=dense&position=chrUn:169005183-169005791 chrUn:169005183-169005791] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr1 plot fr1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr1 plot fr1] | ||
|- | |- | ||
| | | 220 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2 fr2] | ||
Line 2,867: | Line 3,105: | ||
| style='text-align:right'| 156 | | style='text-align:right'| 156 | ||
| style='text-align:right'| 261084207 | | style='text-align:right'| 261084207 | ||
| 151, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2&tanDups=pack&position=chrUn:356162839-356163141 chrUn:356162839-356163141] | | 151, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr2&tanDups=pack&gap=dense&position=chrUn:356162839-356163141 chrUn:356162839-356163141] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr2 plot fr2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr2 plot fr2] | ||
|- | |- | ||
| | | 221 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3] | ||
Line 2,881: | Line 3,119: | ||
| style='text-align:right'| 157 | | style='text-align:right'| 157 | ||
| style='text-align:right'| 257018230 | | style='text-align:right'| 257018230 | ||
| 151, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3&tanDups=pack&position=HE592488:202-504 HE592488:202-504] | | 151, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3&tanDups=pack&gap=dense&position=HE592488:202-504 HE592488:202-504] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr3 plot fr3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fr3 plot fr3] | ||
|- | |- | ||
| | | 222 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1 fulGla1] | ||
Line 2,895: | Line 3,133: | ||
| style='text-align:right'| 93 | | style='text-align:right'| 93 | ||
| style='text-align:right'| 36399474 | | style='text-align:right'| 36399474 | ||
| 576, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1&tanDups=pack&position=KK595554:8470-9622 KK595554:8470-9622] | | 576, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fulGla1&tanDups=pack&gap=dense&position=KK595554:8470-9622 KK595554:8470-9622] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fulGla1 plot fulGla1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=fulGla1 plot fulGla1] | ||
|- | |- | ||
| | | 223 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1] | ||
Line 2,909: | Line 3,147: | ||
| style='text-align:right'| 24 | | style='text-align:right'| 24 | ||
| style='text-align:right'| 573821154 | | style='text-align:right'| 573821154 | ||
| 131, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1&tanDups=pack&position=HE571852:62524-62786 HE571852:62524-62786] | | 131, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1&tanDups=pack&gap=dense&position=HE571852:62524-62786 HE571852:62524-62786] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gadMor1 plot gadMor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gadMor1 plot gadMor1] | ||
|- | |- | ||
| | | 224 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2 galGal2] | ||
Line 2,923: | Line 3,161: | ||
| style='text-align:right'| 3723 | | style='text-align:right'| 3723 | ||
| style='text-align:right'| 846924205 | | style='text-align:right'| 846924205 | ||
| 208, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2&tanDups=pack&position=chr2:94743278-94743694 chr2:94743278-94743694] | | 208, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal2&tanDups=pack&gap=dense&position=chr2:94743278-94743694 chr2:94743278-94743694] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal2 plot galGal2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal2 plot galGal2] | ||
|- | |- | ||
| | | 225 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3 galGal3] | ||
Line 2,937: | Line 3,175: | ||
| style='text-align:right'| 3004 | | style='text-align:right'| 3004 | ||
| style='text-align:right'| 1138149811 | | style='text-align:right'| 1138149811 | ||
| 208, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3&tanDups=pack&position=chr2:97262115-97262531 chr2:97262115-97262531] | | 208, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal3&tanDups=pack&gap=dense&position=chr2:97262115-97262531 chr2:97262115-97262531] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal3 plot galGal3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal3 plot galGal3] | ||
|- | |- | ||
| | | 226 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4] | ||
Line 2,951: | Line 3,189: | ||
| style='text-align:right'| 2968 | | style='text-align:right'| 2968 | ||
| style='text-align:right'| 493569103 | | style='text-align:right'| 493569103 | ||
| 17591, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4&tanDups=pack&position=chrZ:21320544-21355741 chrZ:21320544-21355741] | | 17591, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4&tanDups=pack&gap=dense&position=chrZ:21320544-21355741 chrZ:21320544-21355741] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal4 plot galGal4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal4 plot galGal4] | ||
|- | |- | ||
| | | 227 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5 galGal5] | ||
Line 2,965: | Line 3,203: | ||
| style='text-align:right'| 1925 | | style='text-align:right'| 1925 | ||
| style='text-align:right'| 3490824745 | | style='text-align:right'| 3490824745 | ||
| 17591, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5&tanDups=pack&position=chrZ:21461674-21496871 chrZ:21461674-21496871] | | 17591, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal5&tanDups=pack&gap=dense&position=chrZ:21461674-21496871 chrZ:21461674-21496871] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal5 plot galGal5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galGal5 plot galGal5] | ||
|- | |- | ||
| | | 228 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1] | ||
Line 2,979: | Line 3,217: | ||
| style='text-align:right'| 510 | | style='text-align:right'| 510 | ||
| style='text-align:right'| 2494777971 | | style='text-align:right'| 2494777971 | ||
| 1998, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1&tanDups=pack&position=NW_007726895v1:52419-56415 NW_007726895v1:52419-56415] | | 1998, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1&tanDups=pack&gap=dense&position=NW_007726895v1:52419-56415 NW_007726895v1:52419-56415] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galVar1 plot galVar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=galVar1 plot galVar1] | ||
|- | |- | ||
| | | 229 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1] | ||
Line 2,993: | Line 3,231: | ||
| style='text-align:right'| 3635 | | style='text-align:right'| 3635 | ||
| style='text-align:right'| 770629287 | | style='text-align:right'| 770629287 | ||
| 296, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1&tanDups=pack&position=chrUn:59780312-59780904 chrUn:59780312-59780904] | | 296, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1&tanDups=pack&gap=dense&position=chrUn:59780312-59780904 chrUn:59780312-59780904] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAcu1 plot gasAcu1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAcu1 plot gasAcu1] | ||
|- | |- | ||
| | | 230 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAsc0 gasAsc0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAsc0 gasAsc0] | ||
Line 3,007: | Line 3,245: | ||
| style='text-align:right'| 1417 | | style='text-align:right'| 1417 | ||
| style='text-align:right'| 518945407 | | style='text-align:right'| 518945407 | ||
| 316, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAsc0&tanDups=pack&position=contig_16726:674-1306 contig_16726:674-1306] | | 316, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAsc0&tanDups=pack&gap=dense&position=contig_16726:674-1306 contig_16726:674-1306] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAsc0 plot gasAsc0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gasAsc0 plot gasAsc0] | ||
|- | |- | ||
| | | 231 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0 gavGan0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0 gavGan0] | ||
Line 3,021: | Line 3,259: | ||
| style='text-align:right'| 5005 | | style='text-align:right'| 5005 | ||
| style='text-align:right'| 732648585 | | style='text-align:right'| 732648585 | ||
| 2263, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0&tanDups=pack&position=scaffold7460:20241-24776 scaffold7460:20241-24776] | | 2263, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavGan0&tanDups=pack&gap=dense&position=scaffold7460:20241-24776 scaffold7460:20241-24776] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavGan0 plot gavGan0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavGan0 plot gavGan0] | ||
|- | |- | ||
| | | 232 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1 gavSte1] | ||
Line 3,035: | Line 3,273: | ||
| style='text-align:right'| 75 | | style='text-align:right'| 75 | ||
| style='text-align:right'| 47417993 | | style='text-align:right'| 47417993 | ||
| 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1&tanDups=pack&position=KK611813:2739-3343 KK611813:2739-3343] | | 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gavSte1&tanDups=pack&gap=dense&position=KK611813:2739-3343 KK611813:2739-3343] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavSte1 plot gavSte1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gavSte1 plot gavSte1] | ||
|- | |- | ||
| | | 233 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1] | ||
Line 3,049: | Line 3,287: | ||
| style='text-align:right'| 204 | | style='text-align:right'| 204 | ||
| style='text-align:right'| 268468600 | | style='text-align:right'| 268468600 | ||
| 1013, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1&tanDups=pack&position=JH739970:2776008-2778034 JH739970:2776008-2778034] | | 1013, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1&tanDups=pack&gap=dense&position=JH739970:2776008-2778034 JH739970:2776008-2778034] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=geoFor1 plot geoFor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=geoFor1 plot geoFor1] | ||
|- | |- | ||
| | | 234 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13 gliRes13] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13 gliRes13] | ||
Line 3,063: | Line 3,301: | ||
| style='text-align:right'| 1661 | | style='text-align:right'| 1661 | ||
| style='text-align:right'| 143989628 | | style='text-align:right'| 143989628 | ||
| 95, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13&tanDups=pack&position=4-7:15697982-15698172 4-7:15697982-15698172] | | 95, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gliRes13&tanDups=pack&gap=dense&position=4-7:15697982-15698172 4-7:15697982-15698172] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gliRes13 plot gliRes13] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gliRes13 plot gliRes13] | ||
|- | |- | ||
| | | 235 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor1 gorGor1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor1 gorGor1] | ||
Line 3,077: | Line 3,315: | ||
| style='text-align:right'| 1003 | | style='text-align:right'| 1003 | ||
| style='text-align:right'| 5481108486 | | style='text-align:right'| 5481108486 | ||
| 368, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor1&tanDups=pack&position=Supercontig_0046707:4946-5682 Supercontig_0046707:4946-5682] | | 368, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor1&tanDups=pack&gap=dense&position=Supercontig_0046707:4946-5682 Supercontig_0046707:4946-5682] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor1 plot gorGor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor1 plot gorGor1] | ||
|- | |- | ||
| | | 236 | ||
| 2009 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor2 gorGor2] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 2199951 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 102221723 | |||
| | |||
| style='text-align:right'| 1655 | |||
| style='text-align:right'| 9056398920 | |||
| 6680, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor2&tanDups=pack&gap=dense&position=chr11_104921458_1199196:710959-724328 chr11_104921458_1199196:710959-724328] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor2 plot gorGor2] | |||
|- | |||
| 237 | |||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5 gorGor5] | ||
Line 3,091: | Line 3,343: | ||
| style='text-align:right'| 4102 | | style='text-align:right'| 4102 | ||
| style='text-align:right'| 21270991545 | | style='text-align:right'| 21270991545 | ||
| 338, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5&tanDups=pack&position=CYUI01005848v1:13590-14266 CYUI01005848v1:13590-14266] | | 338, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor5&tanDups=pack&gap=dense&position=CYUI01005848v1:13590-14266 CYUI01005848v1:13590-14266] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor5 plot gorGor5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=gorGor5 plot gorGor5] | ||
|- | |- | ||
| | | 238 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1 haeCon1] | ||
Line 3,105: | Line 3,357: | ||
| style='text-align:right'| 1251.5 | | style='text-align:right'| 1251.5 | ||
| style='text-align:right'| 319005845 | | style='text-align:right'| 319005845 | ||
| 196, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1&tanDups=pack&position=Hcon_Contig0025586:3955-4347 Hcon_Contig0025586:3955-4347] | | 196, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon1&tanDups=pack&gap=dense&position=Hcon_Contig0025586:3955-4347 Hcon_Contig0025586:3955-4347] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon1 plot haeCon1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon1 plot haeCon1] | ||
|- | |- | ||
| | | 239 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2 haeCon2] | ||
Line 3,119: | Line 3,371: | ||
| style='text-align:right'| 570 | | style='text-align:right'| 570 | ||
| style='text-align:right'| 187299643 | | style='text-align:right'| 187299643 | ||
| 2147, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2&tanDups=pack&position=scaffold_1557:10532-14826 scaffold_1557:10532-14826] | | 2147, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=haeCon2&tanDups=pack&gap=dense&position=scaffold_1557:10532-14826 scaffold_1557:10532-14826] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon2 plot haeCon2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=haeCon2 plot haeCon2] | ||
|- | |- | ||
| | | 240 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1 halAlb1] | ||
Line 3,133: | Line 3,385: | ||
| style='text-align:right'| 301 | | style='text-align:right'| 301 | ||
| style='text-align:right'| 41720730 | | style='text-align:right'| 41720730 | ||
| 548, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1&tanDups=pack&position=KK653364:30569-31666 KK653364:30569-31666] | | 548, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halAlb1&tanDups=pack&gap=dense&position=KK653364:30569-31666 KK653364:30569-31666] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halAlb1 plot halAlb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halAlb1 plot halAlb1] | ||
|- | |- | ||
| | | 241 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1 halLeu1] | ||
Line 3,147: | Line 3,399: | ||
| style='text-align:right'| 4586 | | style='text-align:right'| 4586 | ||
| style='text-align:right'| 98353830 | | style='text-align:right'| 98353830 | ||
| 79, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1&tanDups=pack&position=KL869431:1084034-1084192 KL869431:1084034-1084192] | | 79, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=halLeu1&tanDups=pack&gap=dense&position=KL869431:1084034-1084192 KL869431:1084034-1084192] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halLeu1 plot halLeu1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=halLeu1 plot halLeu1] | ||
|- | |- | ||
| | | 242 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1] | ||
Line 3,161: | Line 3,413: | ||
| style='text-align:right'| 3524.5 | | style='text-align:right'| 3524.5 | ||
| style='text-align:right'| 202958431 | | style='text-align:right'| 202958431 | ||
| 10390, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1&tanDups=pack&position=JH425331:1373378-1394177 JH425331:1373378-1394177] | | 10390, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1&tanDups=pack&gap=dense&position=JH425331:1373378-1394177 JH425331:1373378-1394177] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hapBur1 plot hapBur1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hapBur1 plot hapBur1] | ||
|- | |- | ||
| | | 243 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1 hetBac1] | ||
Line 3,175: | Line 3,427: | ||
| style='text-align:right'| 673 | | style='text-align:right'| 673 | ||
| style='text-align:right'| 12041725 | | style='text-align:right'| 12041725 | ||
| 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1&tanDups=pack&position=GL996135v1:102345-102979 GL996135v1:102345-102979] | | 317, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetBac1&tanDups=pack&gap=dense&position=GL996135v1:102345-102979 GL996135v1:102345-102979] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetBac1 plot hetBac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetBac1 plot hetBac1] | ||
|- | |- | ||
| | | 244 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1 hetGla1] | ||
Line 3,189: | Line 3,441: | ||
| style='text-align:right'| 3329 | | style='text-align:right'| 3329 | ||
| style='text-align:right'| 1244942735 | | style='text-align:right'| 1244942735 | ||
| 3930, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1&tanDups=pack&position=JH170644:110745-118605 JH170644:110745-118605] | | 3930, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla1&tanDups=pack&gap=dense&position=JH170644:110745-118605 JH170644:110745-118605] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetGla1 plot hetGla1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetGla1 plot hetGla1] | ||
|- | |- | ||
| | | 245 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2] | ||
Line 3,203: | Line 3,455: | ||
| style='text-align:right'| 6941 | | style='text-align:right'| 6941 | ||
| style='text-align:right'| 791605735 | | style='text-align:right'| 791605735 | ||
| 158, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2&tanDups=pack&position=JH602100:6973404-6973720 JH602100:6973404-6973720] | | 158, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2&tanDups=pack&gap=dense&position=JH602100:6973404-6973720 JH602100:6973404-6973720] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetGla2 plot hetGla2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hetGla2 plot hetGla2] | ||
|- | |- | ||
| | | 246 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19] | ||
Line 3,217: | Line 3,469: | ||
| style='text-align:right'| 7299 | | style='text-align:right'| 7299 | ||
| style='text-align:right'| 8376915441 | | style='text-align:right'| 8376915441 | ||
| 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19&tanDups=pack&position=chr13:80531634-80532084 chr13:80531634-80532084] | | 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19&tanDups=pack&gap=dense&position=chr13:80531634-80532084 chr13:80531634-80532084] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hg19 plot hg19] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hg19 plot hg19] | ||
|- | |- | ||
| | | 247 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38] | ||
Line 3,231: | Line 3,483: | ||
| style='text-align:right'| 7485 | | style='text-align:right'| 7485 | ||
| style='text-align:right'| 11152418001 | | style='text-align:right'| 11152418001 | ||
| 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38&tanDups=pack&position=chr13:79957499-79957949 chr13:79957499-79957949] | | 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38&tanDups=pack&gap=dense&position=chr13:79957499-79957949 chr13:79957499-79957949] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hg38 plot hg38] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=hg38 plot hg38] | ||
|- | |- | ||
| | | 248 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homIni14 homIni14] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homIni14 homIni14] | ||
Line 3,245: | Line 3,497: | ||
| style='text-align:right'| 7838 | | style='text-align:right'| 7838 | ||
| style='text-align:right'| 8265721353 | | style='text-align:right'| 8265721353 | ||
| 294, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homIni14&tanDups=pack&position=chr20:9839450-9840038 chr20:9839450-9840038] | | 294, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homIni14&tanDups=pack&gap=dense&position=chr20:9839450-9840038 chr20:9839450-9840038] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homIni14 plot homIni14] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homIni14 plot homIni14] | ||
|- | |- | ||
| | | 249 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homNea0 homNea0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homNea0 homNea0] | ||
Line 3,259: | Line 3,511: | ||
| style='text-align:right'| 14.5 | | style='text-align:right'| 14.5 | ||
| style='text-align:right'| 2669 | | style='text-align:right'| 2669 | ||
| 37, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homNea0&tanDups=pack&position=151586_3339_2553:20-94 151586_3339_2553:20-94] | | 37, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=homNea0&tanDups=pack&gap=dense&position=151586_3339_2553:20-94 151586_3339_2553:20-94] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homNea0 plot homNea0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=homNea0 plot homNea0] | ||
|- | |- | ||
| | | 251 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1] | ||
Line 3,273: | Line 3,525: | ||
| style='text-align:right'| 6295 | | style='text-align:right'| 6295 | ||
| style='text-align:right'| 3230508925 | | style='text-align:right'| 3230508925 | ||
| 276, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1&tanDups=pack&position=JH725590:3244288-3244840 JH725590:3244288-3244840] | | 276, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1&tanDups=pack&gap=dense&position=JH725590:3244288-3244840 JH725590:3244288-3244840] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=jacJac1 plot jacJac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=jacJac1 plot jacJac1] | ||
|- | |- | ||
| | | 252 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1] | ||
Line 3,287: | Line 3,539: | ||
| style='text-align:right'| 1038 | | style='text-align:right'| 1038 | ||
| style='text-align:right'| 1285603914 | | style='text-align:right'| 1285603914 | ||
| 182, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1&tanDups=pack&position=JH128998:42125-42489 JH128998:42125-42489] | | 182, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1&tanDups=pack&gap=dense&position=JH128998:42125-42489 JH128998:42125-42489] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=latCha1 plot latCha1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=latCha1 plot latCha1] | ||
|- | |- | ||
| | | 253 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13 lauRas13] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13 lauRas13] | ||
Line 3,301: | Line 3,553: | ||
| style='text-align:right'| 1493 | | style='text-align:right'| 1493 | ||
| style='text-align:right'| 210427636 | | style='text-align:right'| 210427636 | ||
| 125, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13&tanDups=pack&position=5-6:22761072-22761322 5-6:22761072-22761322] | | 125, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lauRas13&tanDups=pack&gap=dense&position=5-6:22761072-22761322 5-6:22761072-22761322] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lauRas13 plot lauRas13] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lauRas13 plot lauRas13] | ||
|- | |- | ||
| | | 254 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1 lepDis1] | ||
Line 3,315: | Line 3,567: | ||
| style='text-align:right'| 94 | | style='text-align:right'| 94 | ||
| style='text-align:right'| 31438992 | | style='text-align:right'| 31438992 | ||
| 199, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1&tanDups=pack&position=JJRK01010260:4452-4850 JJRK01010260:4452-4850] | | 199, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepDis1&tanDups=pack&gap=dense&position=JJRK01010260:4452-4850 JJRK01010260:4452-4850] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepDis1 plot lepDis1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepDis1 plot lepDis1] | ||
|- | |- | ||
| | | 255 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1] | ||
Line 3,329: | Line 3,581: | ||
| style='text-align:right'| 1084 | | style='text-align:right'| 1084 | ||
| style='text-align:right'| 350156295 | | style='text-align:right'| 350156295 | ||
| 488, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1&tanDups=pack&position=chrLG5:14840992-14841969 chrLG5:14840992-14841969] | | 488, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1&tanDups=pack&gap=dense&position=chrLG5:14840992-14841969 chrLG5:14840992-14841969] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepOcu1 plot lepOcu1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepOcu1 plot lepOcu1] | ||
|- | |- | ||
| | | 256 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1] | ||
Line 3,343: | Line 3,595: | ||
| style='text-align:right'| 7787 | | style='text-align:right'| 7787 | ||
| style='text-align:right'| 2911858141 | | style='text-align:right'| 2911858141 | ||
| 168, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1&tanDups=pack&position=KB716722:387801-388137 KB716722:387801-388137] | | 168, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1&tanDups=pack&gap=dense&position=KB716722:387801-388137 KB716722:387801-388137] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepWed1 plot lepWed1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lepWed1 plot lepWed1] | ||
|- | |- | ||
| | | 257 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1 letCam1] | ||
Line 3,357: | Line 3,609: | ||
| style='text-align:right'| 153 | | style='text-align:right'| 153 | ||
| style='text-align:right'| 1525909318 | | style='text-align:right'| 1525909318 | ||
| 207, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1&tanDups=pack&position=KE997215:997-1411 KE997215:997-1411] | | 207, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=letCam1&tanDups=pack&gap=dense&position=KE997215:997-1411 KE997215:997-1411] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=letCam1 plot letCam1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=letCam1 plot letCam1] | ||
|- | |- | ||
| | | 258 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=linHum0 linHum0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=linHum0 linHum0] | ||
Line 3,371: | Line 3,623: | ||
| style='text-align:right'| 5018 | | style='text-align:right'| 5018 | ||
| style='text-align:right'| 259661061 | | style='text-align:right'| 259661061 | ||
| 101, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=linHum0&tanDups=pack&position=NW_012160424:64875-65077 NW_012160424:64875-65077] | | 101, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=linHum0&tanDups=pack&gap=dense&position=NW_012160424:64875-65077 NW_012160424:64875-65077] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=linHum0 plot linHum0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=linHum0 plot linHum0] | ||
|- | |- | ||
| | | 259 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1 lipVex1] | ||
Line 3,385: | Line 3,637: | ||
| style='text-align:right'| 8421 | | style='text-align:right'| 8421 | ||
| style='text-align:right'| 4503138248 | | style='text-align:right'| 4503138248 | ||
| 6076, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1&tanDups=pack&position=KE559913:905157-917309 KE559913:905157-917309] | | 6076, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=lipVex1&tanDups=pack&gap=dense&position=KE559913:905157-917309 KE559913:905157-917309] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lipVex1 plot lipVex1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=lipVex1 plot lipVex1] | ||
|- | |- | ||
| | | 260 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1 loaLoa1] | ||
Line 3,399: | Line 3,651: | ||
| style='text-align:right'| 188 | | style='text-align:right'| 188 | ||
| style='text-align:right'| 16478676 | | style='text-align:right'| 16478676 | ||
| 109, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1&tanDups=pack&position=JH717180v1:404-622 JH717180v1:404-622] | | 109, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loaLoa1&tanDups=pack&gap=dense&position=JH717180v1:404-622 JH717180v1:404-622] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loaLoa1 plot loaLoa1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loaLoa1 plot loaLoa1] | ||
|- | |- | ||
| | | 261 | ||
| 2005 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr1 loxAfr1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 357658 | |||
| style='text-align:right'| 40 | |||
| style='text-align:right'| 19137870 | |||
| | |||
| style='text-align:right'| 2747 | |||
| style='text-align:right'| 1623517964 | |||
| 191, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr1&tanDups=pack&gap=dense&position=scaffold_68013:5261-5643 scaffold_68013:5261-5643] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loxAfr1 plot loxAfr1] | |||
|- | |||
| 262 | |||
| 2008 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr2 loxAfr2] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 452605 | |||
| style='text-align:right'| 42 | |||
| style='text-align:right'| 26444359 | |||
| | |||
| style='text-align:right'| 3136 | |||
| style='text-align:right'| 2138902576 | |||
| 191, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr2&tanDups=pack&gap=dense&position=scaffold_2221:111993-112375 scaffold_2221:111993-112375] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loxAfr2 plot loxAfr2] | |||
|- | |||
| 263 | |||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3] | ||
Line 3,413: | Line 3,693: | ||
| style='text-align:right'| 7538 | | style='text-align:right'| 7538 | ||
| style='text-align:right'| 3438092453 | | style='text-align:right'| 3438092453 | ||
| 223, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3&tanDups=pack&position=scaffold_12:19769054-19769500 scaffold_12:19769054-19769500] | | 223, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3&tanDups=pack&gap=dense&position=scaffold_12:19769054-19769500 scaffold_12:19769054-19769500] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loxAfr3 plot loxAfr3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=loxAfr3 plot loxAfr3] | ||
|- | |- | ||
| | | 264 | ||
| 2008 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug1 macEug1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 165545 | |||
| style='text-align:right'| 37 | |||
| style='text-align:right'| 7960226 | |||
| | |||
| style='text-align:right'| 131 | |||
| style='text-align:right'| 298753576 | |||
| 227, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug1&tanDups=pack&gap=dense&position=Scaffold4099:16828-17282 Scaffold4099:16828-17282] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macEug1 plot macEug1] | |||
|- | |||
| 265 | |||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2] | ||
Line 3,427: | Line 3,721: | ||
| style='text-align:right'| 242 | | style='text-align:right'| 242 | ||
| style='text-align:right'| 580939886 | | style='text-align:right'| 580939886 | ||
| 216, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2&tanDups=pack&position=GL085287:42394-42826 GL085287:42394-42826] | | 216, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2&tanDups=pack&gap=dense&position=GL085287:42394-42826 GL085287:42394-42826] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macEug2 plot macEug2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macEug2 plot macEug2] | ||
|- | |- | ||
| | | 266 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5] | ||
Line 3,441: | Line 3,735: | ||
| style='text-align:right'| 5488 | | style='text-align:right'| 5488 | ||
| style='text-align:right'| 8623449917 | | style='text-align:right'| 8623449917 | ||
| 215, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5&tanDups=pack&position=chr12:93264384-93264814 chr12:93264384-93264814] | | 215, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5&tanDups=pack&gap=dense&position=chr12:93264384-93264814 chr12:93264384-93264814] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macFas5 plot macFas5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macFas5 plot macFas5] | ||
|- | |- | ||
| | | 267 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1 macNem1] | ||
Line 3,455: | Line 3,749: | ||
| style='text-align:right'| 5927 | | style='text-align:right'| 5927 | ||
| style='text-align:right'| 6575951123 | | style='text-align:right'| 6575951123 | ||
| 2580, 4, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1&tanDups=pack&position=NW_012015577v1:7214313-7219476 NW_012015577v1:7214313-7219476] | | 2580, 4, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macNem1&tanDups=pack&gap=dense&position=NW_012015577v1:7214313-7219476 NW_012015577v1:7214313-7219476] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macNem1 plot macNem1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=macNem1 plot macNem1] | ||
|- | |- | ||
| | | 268 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1 manPen1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1 manPen1] | ||
Line 3,469: | Line 3,763: | ||
| style='text-align:right'| 853 | | style='text-align:right'| 853 | ||
| style='text-align:right'| 887951462 | | style='text-align:right'| 887951462 | ||
| 4944, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1&tanDups=pack&position=KN012191:2418-12306 KN012191:2418-12306] | | 4944, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manPen1&tanDups=pack&gap=dense&position=KN012191:2418-12306 KN012191:2418-12306] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manPen1 plot manPen1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manPen1 plot manPen1] | ||
|- | |- | ||
| | | 269 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1 manVit1] | ||
Line 3,483: | Line 3,777: | ||
| style='text-align:right'| 206 | | style='text-align:right'| 206 | ||
| style='text-align:right'| 245456943 | | style='text-align:right'| 245456943 | ||
| 5268, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1&tanDups=pack&position=KK733349:4046063-4056599 KK733349:4046063-4056599] | | 5268, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=manVit1&tanDups=pack&gap=dense&position=KK733349:4046063-4056599 KK733349:4046063-4056599] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manVit1 plot manVit1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=manVit1 plot manVit1] | ||
|- | |- | ||
| | | 271 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1] | ||
Line 3,497: | Line 3,791: | ||
| style='text-align:right'| 4159 | | style='text-align:right'| 4159 | ||
| style='text-align:right'| 307830483 | | style='text-align:right'| 307830483 | ||
| 9605, 105, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1&tanDups=pack&position=JH720664:938440-957754 JH720664:938440-957754] | | 9605, 105, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1&tanDups=pack&gap=dense&position=JH720664:938440-957754 JH720664:938440-957754] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mayZeb1 plot mayZeb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mayZeb1 plot mayZeb1] | ||
|- | |- | ||
| | | 272 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1 megLyr1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1 megLyr1] | ||
Line 3,511: | Line 3,805: | ||
| style='text-align:right'| 112 | | style='text-align:right'| 112 | ||
| style='text-align:right'| 35852812 | | style='text-align:right'| 35852812 | ||
| 149, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1&tanDups=pack&position=KI041466:2479-2777 KI041466:2479-2777] | | 149, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=megLyr1&tanDups=pack&gap=dense&position=KI041466:2479-2777 KI041466:2479-2777] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=megLyr1 plot megLyr1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=megLyr1 plot megLyr1] | ||
|- | |- | ||
| | | 273 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1] | ||
Line 3,525: | Line 3,819: | ||
| style='text-align:right'| 2825 | | style='text-align:right'| 2825 | ||
| style='text-align:right'| 133788059 | | style='text-align:right'| 133788059 | ||
| 169, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1&tanDups=pack&position=chr3:54352580-54352918 chr3:54352580-54352918] | | 169, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1&tanDups=pack&gap=dense&position=chr3:54352580-54352918 chr3:54352580-54352918] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal1 plot melGal1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal1 plot melGal1] | ||
|- | |- | ||
| | | 274 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5 melGal5] | ||
Line 3,539: | Line 3,833: | ||
| style='text-align:right'| 197 | | style='text-align:right'| 197 | ||
| style='text-align:right'| 188019328 | | style='text-align:right'| 188019328 | ||
| 173, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5&tanDups=pack&position=chrUn_NW_011217171v1:1-347 chrUn_NW_011217171v1:1-347] | | 173, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal5&tanDups=pack&gap=dense&position=chrUn_NW_011217171v1:1-347 chrUn_NW_011217171v1:1-347] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal5 plot melGal5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melGal5 plot melGal5] | ||
|- | |- | ||
| | | 275 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1 melHap1] | ||
Line 3,553: | Line 3,847: | ||
| style='text-align:right'| 375 | | style='text-align:right'| 375 | ||
| style='text-align:right'| 21806223 | | style='text-align:right'| 21806223 | ||
| 157, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1&tanDups=pack&position=MhA1_Contig2844:850-1164 MhA1_Contig2844:850-1164] | | 157, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melHap1&tanDups=pack&gap=dense&position=MhA1_Contig2844:850-1164 MhA1_Contig2844:850-1164] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melHap1 plot melHap1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melHap1 plot melHap1] | ||
|- | |- | ||
| | | 276 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1 melInc1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1 melInc1] | ||
Line 3,567: | Line 3,861: | ||
| style='text-align:right'| 558 | | style='text-align:right'| 558 | ||
| style='text-align:right'| 47252172 | | style='text-align:right'| 47252172 | ||
| 183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1&tanDups=pack&position=Minc_Contig6373:3669-4035 Minc_Contig6373:3669-4035] | | 183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc1&tanDups=pack&gap=dense&position=Minc_Contig6373:3669-4035 Minc_Contig6373:3669-4035] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc1 plot melInc1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc1 plot melInc1] | ||
|- | |- | ||
| | | 277 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2 melInc2] | ||
Line 3,581: | Line 3,875: | ||
| style='text-align:right'| 1067 | | style='text-align:right'| 1067 | ||
| style='text-align:right'| 83086394 | | style='text-align:right'| 83086394 | ||
| 183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2&tanDups=pack&position=MiV1ctg2756:3669-4035 MiV1ctg2756:3669-4035] | | 183, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melInc2&tanDups=pack&gap=dense&position=MiV1ctg2756:3669-4035 MiV1ctg2756:3669-4035] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc2 plot melInc2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melInc2 plot melInc2] | ||
|- | |- | ||
| | | 278 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1] | ||
Line 3,595: | Line 3,889: | ||
| style='text-align:right'| 6271 | | style='text-align:right'| 6271 | ||
| style='text-align:right'| 754338919 | | style='text-align:right'| 754338919 | ||
| 120, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1&tanDups=pack&position=JH556605:5210251-5210491 JH556605:5210251-5210491] | | 120, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1&tanDups=pack&gap=dense&position=JH556605:5210251-5210491 JH556605:5210251-5210491] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melUnd1 plot melUnd1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=melUnd1 plot melUnd1] | ||
|- | |- | ||
| | | 279 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1 merNub1] | ||
Line 3,609: | Line 3,903: | ||
| style='text-align:right'| 174 | | style='text-align:right'| 174 | ||
| style='text-align:right'| 103616988 | | style='text-align:right'| 103616988 | ||
| 543, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1&tanDups=pack&position=KK705997:21022-22108 KK705997:21022-22108] | | 543, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=merNub1&tanDups=pack&gap=dense&position=KK705997:21022-22108 KK705997:21022-22108] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=merNub1 plot merNub1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=merNub1 plot merNub1] | ||
|- | |- | ||
| | | 280 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1] | ||
Line 3,623: | Line 3,917: | ||
| style='text-align:right'| 3099 | | style='text-align:right'| 3099 | ||
| style='text-align:right'| 1465851012 | | style='text-align:right'| 1465851012 | ||
| 529, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1&tanDups=pack&position=KB708261:1360324-1361383 KB708261:1360324-1361383] | | 529, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1&tanDups=pack&gap=dense&position=KB708261:1360324-1361383 KB708261:1360324-1361383] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesAur1 plot mesAur1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesAur1 plot mesAur1] | ||
|- | |- | ||
| | | 281 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1 mesUni1] | ||
Line 3,637: | Line 3,931: | ||
| style='text-align:right'| 257 | | style='text-align:right'| 257 | ||
| style='text-align:right'| 120590969 | | style='text-align:right'| 120590969 | ||
| 271, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1&tanDups=pack&position=JJRI01098248:16372-16914 JJRI01098248:16372-16914] | | 271, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mesUni1&tanDups=pack&gap=dense&position=JJRI01098248:16372-16914 JJRI01098248:16372-16914] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesUni1 plot mesUni1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mesUni1 plot mesUni1] | ||
|- | |- | ||
| | | 282 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur0 micMur0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur0 micMur0] | ||
Line 3,651: | Line 3,945: | ||
| style='text-align:right'| 3493 | | style='text-align:right'| 3493 | ||
| style='text-align:right'| 1863320468 | | style='text-align:right'| 1863320468 | ||
| 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur0&tanDups=pack&position=scaffold_11535:27481-28085 scaffold_11535:27481-28085] | | 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur0&tanDups=pack&gap=dense&position=scaffold_11535:27481-28085 scaffold_11535:27481-28085] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur0 plot micMur0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur0 plot micMur0] | ||
|- | |- | ||
| | | 283 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1 micMur1] | ||
Line 3,665: | Line 3,959: | ||
| style='text-align:right'| 3194 | | style='text-align:right'| 3194 | ||
| style='text-align:right'| 1669326577 | | style='text-align:right'| 1669326577 | ||
| 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1&tanDups=pack&position=scaffold_11535:27481-28085 scaffold_11535:27481-28085] | | 302, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur1&tanDups=pack&gap=dense&position=scaffold_11535:27481-28085 scaffold_11535:27481-28085] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur1 plot micMur1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur1 plot micMur1] | ||
|- | |- | ||
| | | 284 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2] | ||
Line 3,679: | Line 3,973: | ||
| style='text-align:right'| 7563 | | style='text-align:right'| 7563 | ||
| style='text-align:right'| 8957944918 | | style='text-align:right'| 8957944918 | ||
| 3388, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2&tanDups=pack&position=KQ058422v1:91440-98218 KQ058422v1:91440-98218] | | 3388, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2&tanDups=pack&gap=dense&position=KQ058422v1:91440-98218 KQ058422v1:91440-98218] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur2 plot micMur2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur2 plot micMur2] | ||
|- | |- | ||
| | | 285 | ||
| 2017 | | 2017 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3 micMur3] | ||
Line 3,693: | Line 3,987: | ||
| style='text-align:right'| 7729 | | style='text-align:right'| 7729 | ||
| style='text-align:right'| 9630726519 | | style='text-align:right'| 9630726519 | ||
| 185, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3&tanDups=pack&position=chr5:43933509-43933879 chr5:43933509-43933879] | | 185, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur3&tanDups=pack&gap=dense&position=chr5:43933509-43933879 chr5:43933509-43933879] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur3 plot micMur3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micMur3 plot micMur3] | ||
|- | |- | ||
| | | 286 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1] | ||
Line 3,707: | Line 4,001: | ||
| style='text-align:right'| 2433 | | style='text-align:right'| 2433 | ||
| style='text-align:right'| 1838809952 | | style='text-align:right'| 1838809952 | ||
| 278, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1&tanDups=pack&position=chrLG5:33413026-33413582 chrLG5:33413026-33413582] | | 278, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1&tanDups=pack&gap=dense&position=chrLG5:33413026-33413582 chrLG5:33413026-33413582] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micOch1 plot micOch1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=micOch1 plot micOch1] | ||
|- | |- | ||
| | | 287 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm5 mm5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm5 mm5] | ||
Line 3,721: | Line 4,015: | ||
| style='text-align:right'| 5464 | | style='text-align:right'| 5464 | ||
| style='text-align:right'| 5947046883 | | style='text-align:right'| 5947046883 | ||
| 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm5&tanDups=pack&position=chr11:108081652-108082650 chr11:108081652-108082650] | | 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm5&tanDups=pack&gap=dense&position=chr11:108081652-108082650 chr11:108081652-108082650] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm5 plot mm5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm5 plot mm5] | ||
|- | |- | ||
| | | 288 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm6 mm6] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm6 mm6] | ||
Line 3,735: | Line 4,029: | ||
| style='text-align:right'| 5669 | | style='text-align:right'| 5669 | ||
| style='text-align:right'| 6168390266 | | style='text-align:right'| 6168390266 | ||
| 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm6&tanDups=pack&position=chr11:108231617-108232615 chr11:108231617-108232615] | | 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm6&tanDups=pack&gap=dense&position=chr11:108231617-108232615 chr11:108231617-108232615] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm6 plot mm6] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm6 plot mm6] | ||
|- | |- | ||
| | | 289 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7 mm7] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7 mm7] | ||
Line 3,749: | Line 4,043: | ||
| style='text-align:right'| 6053 | | style='text-align:right'| 6053 | ||
| style='text-align:right'| 5781640680 | | style='text-align:right'| 5781640680 | ||
| 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7&tanDups=pack&position=chr11:108519568-108520566 chr11:108519568-108520566] | | 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm7&tanDups=pack&gap=dense&position=chr11:108519568-108520566 chr11:108519568-108520566] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm7 plot mm7] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm7 plot mm7] | ||
|- | |- | ||
| | | 290 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8 mm8] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8 mm8] | ||
Line 3,763: | Line 4,057: | ||
| style='text-align:right'| 6175 | | style='text-align:right'| 6175 | ||
| style='text-align:right'| 5992918402 | | style='text-align:right'| 5992918402 | ||
| 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8&tanDups=pack&position=chr11:108226617-108227615 chr11:108226617-108227615] | | 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm8&tanDups=pack&gap=dense&position=chr11:108226617-108227615 chr11:108226617-108227615] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm8 plot mm8] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm8 plot mm8] | ||
|- | |- | ||
| | | 291 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9 mm9] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9 mm9] | ||
Line 3,777: | Line 4,071: | ||
| style='text-align:right'| 6202 | | style='text-align:right'| 6202 | ||
| style='text-align:right'| 6169636600 | | style='text-align:right'| 6169636600 | ||
| 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9&tanDups=pack&position=chr11:108271841-108272839 chr11:108271841-108272839] | | 499, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9&tanDups=pack&gap=dense&position=chr11:108271841-108272839 chr11:108271841-108272839] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm9 plot mm9] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=mm9 plot mm9] | ||
|- | |- | ||
| | | 292 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom1 monDom1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom1 monDom1] | ||
Line 3,791: | Line 4,085: | ||
| style='text-align:right'| 4462 | | style='text-align:right'| 4462 | ||
| style='text-align:right'| 3384507689 | | style='text-align:right'| 3384507689 | ||
| 487, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom1&tanDups=pack&position=scaffold_14964:3383335-3384309 scaffold_14964:3383335-3384309] | | 487, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom1&tanDups=pack&gap=dense&position=scaffold_14964:3383335-3384309 scaffold_14964:3383335-3384309] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=monDom1 plot monDom1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=monDom1 plot monDom1] | ||
|- | |- | ||
| | | 293 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom2 monDom2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom2 monDom2] | ||
Line 3,805: | Line 4,099: | ||
| style='text-align:right'| 4132 | | style='text-align:right'| 4132 | ||
| style='text-align:right'| 4182097432 | | style='text-align:right'| 4182097432 | ||
| 685, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom2&tanDups=pack&position=scaffold_47:13428470-13429840 scaffold_47:13428470-13429840] | | 685, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom2&tanDups=pack&gap=dense&position=scaffold_47:13428470-13429840 scaffold_47:13428470-13429840] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=monDom2 plot monDom2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=monDom2 plot monDom2] | ||
|- | |- | ||
| | | 294 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2 musDom2] | ||
Line 3,819: | Line 4,113: | ||
| style='text-align:right'| 1941 | | style='text-align:right'| 1941 | ||
| style='text-align:right'| 2513509860 | | style='text-align:right'| 2513509860 | ||
| 2028, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2&tanDups=pack&position=KB856326:64184-68240 KB856326:64184-68240] | | 2028, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musDom2&tanDups=pack&gap=dense&position=KB856326:64184-68240 KB856326:64184-68240] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musDom2 plot musDom2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musDom2 plot musDom2] | ||
|- | |- | ||
| | | 295 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1] | ||
Line 3,833: | Line 4,127: | ||
| style='text-align:right'| 8370 | | style='text-align:right'| 8370 | ||
| style='text-align:right'| 2709245222 | | style='text-align:right'| 2709245222 | ||
| 446, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1&tanDups=pack&position=GL896951:5218180-5219072 GL896951:5218180-5219072] | | 446, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1&tanDups=pack&gap=dense&position=GL896951:5218180-5219072 GL896951:5218180-5219072] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musFur1 plot musFur1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=musFur1 plot musFur1] | ||
|- | |- | ||
| | | 296 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1 myoBra1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1 myoBra1] | ||
Line 3,847: | Line 4,141: | ||
| style='text-align:right'| 1070 | | style='text-align:right'| 1070 | ||
| style='text-align:right'| 2100859228 | | style='text-align:right'| 2100859228 | ||
| 3719, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1&tanDups=pack&position=KE163224:7566116-7573554 KE163224:7566116-7573554] | | 3719, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoBra1&tanDups=pack&gap=dense&position=KE163224:7566116-7573554 KE163224:7566116-7573554] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoBra1 plot myoBra1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoBra1 plot myoBra1] | ||
|- | |- | ||
| | | 297 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1] | ||
Line 3,861: | Line 4,155: | ||
| style='text-align:right'| 2186 | | style='text-align:right'| 2186 | ||
| style='text-align:right'| 1562115676 | | style='text-align:right'| 1562115676 | ||
| 595, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1&tanDups=pack&position=KB109238:3742816-3744006 KB109238:3742816-3744006] | | 595, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1&tanDups=pack&gap=dense&position=KB109238:3742816-3744006 KB109238:3742816-3744006] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoDav1 plot myoDav1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoDav1 plot myoDav1] | ||
|- | |- | ||
| | | 298 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1 myoLuc1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1 myoLuc1] | ||
Line 3,875: | Line 4,169: | ||
| style='text-align:right'| 2605 | | style='text-align:right'| 2605 | ||
| style='text-align:right'| 1175238045 | | style='text-align:right'| 1175238045 | ||
| 253, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1&tanDups=pack&position=scaffold_116983:3336-3842 scaffold_116983:3336-3842] | | 253, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc1&tanDups=pack&gap=dense&position=scaffold_116983:3336-3842 scaffold_116983:3336-3842] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoLuc1 plot myoLuc1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoLuc1 plot myoLuc1] | ||
|- | |- | ||
| | | 299 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2] | ||
Line 3,889: | Line 4,183: | ||
| style='text-align:right'| 5420 | | style='text-align:right'| 5420 | ||
| style='text-align:right'| 2827568613 | | style='text-align:right'| 2827568613 | ||
| 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2&tanDups=pack&position=GL430179:150290-150914 GL430179:150290-150914] | | 312, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2&tanDups=pack&gap=dense&position=GL430179:150290-150914 GL430179:150290-150914] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoLuc2 plot myoLuc2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=myoLuc2 plot myoLuc2] | ||
|- | |- | ||
| | | 300 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanGal1 nanGal1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanGal1 nanGal1] | ||
Line 3,903: | Line 4,197: | ||
| style='text-align:right'| 3120.5 | | style='text-align:right'| 3120.5 | ||
| style='text-align:right'| 3348487653 | | style='text-align:right'| 3348487653 | ||
| 767, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanGal1&tanDups=pack&position=KL200570:476406-477940 KL200570:476406-477940] | | 767, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanGal1&tanDups=pack&gap=dense&position=KL200570:476406-477940 KL200570:476406-477940] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nanGal1 plot nanGal1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nanGal1 plot nanGal1] | ||
|- | |- | ||
| | | 301 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1 nanPar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1 nanPar1] | ||
Line 3,917: | Line 4,211: | ||
| style='text-align:right'| 248 | | style='text-align:right'| 248 | ||
| style='text-align:right'| 1815148366 | | style='text-align:right'| 1815148366 | ||
| 7565, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1&tanDups=pack&position=KN905954v1:74233-89363 KN905954v1:74233-89363] | | 7565, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nanPar1&tanDups=pack&gap=dense&position=KN905954v1:74233-89363 KN905954v1:74233-89363] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nanPar1 plot nanPar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nanPar1 plot nanPar1] | ||
|- | |- | ||
| | | 302 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1 nasLar1] | ||
Line 3,931: | Line 4,225: | ||
| style='text-align:right'| 5276 | | style='text-align:right'| 5276 | ||
| style='text-align:right'| 1979226063 | | style='text-align:right'| 1979226063 | ||
| 5956, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1&tanDups=pack&position=chrX:51509450-51521363 chrX:51509450-51521363] | | 5956, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nasLar1&tanDups=pack&gap=dense&position=chrX:51509450-51521363 chrX:51509450-51521363] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nasLar1 plot nasLar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nasLar1 plot nasLar1] | ||
|- | |- | ||
| | | 303 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1 necAme1] | ||
Line 3,945: | Line 4,239: | ||
| style='text-align:right'| 1580 | | style='text-align:right'| 1580 | ||
| style='text-align:right'| 123448969 | | style='text-align:right'| 123448969 | ||
| 93, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1&tanDups=pack&position=KI659398v1:132-318 KI659398v1:132-318] | | 93, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=necAme1&tanDups=pack&gap=dense&position=KI659398v1:132-318 KI659398v1:132-318] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=necAme1 plot necAme1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=necAme1 plot necAme1] | ||
|- | |- | ||
| | | 304 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1 nemVec1] | ||
Line 3,959: | Line 4,253: | ||
| style='text-align:right'| 589 | | style='text-align:right'| 589 | ||
| style='text-align:right'| 1501673463 | | style='text-align:right'| 1501673463 | ||
| 353, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1&tanDups=pack&position=scaffold_201:423580-424286 scaffold_201:423580-424286] | | 353, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nemVec1&tanDups=pack&gap=dense&position=scaffold_201:423580-424286 scaffold_201:423580-424286] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nemVec1 plot nemVec1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nemVec1 plot nemVec1] | ||
|- | |- | ||
| | | 305 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1] | ||
Line 3,973: | Line 4,267: | ||
| style='text-align:right'| 1655 | | style='text-align:right'| 1655 | ||
| style='text-align:right'| 274117853 | | style='text-align:right'| 274117853 | ||
| 8242, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1&tanDups=pack&position=JH422273:8382583-8399086 JH422273:8382583-8399086] | | 8242, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1&tanDups=pack&gap=dense&position=JH422273:8382583-8399086 JH422273:8382583-8399086] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=neoBri1 plot neoBri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=neoBri1 plot neoBri1] | ||
|- | |- | ||
| | | 306 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1 nipNip1] | ||
Line 3,987: | Line 4,281: | ||
| style='text-align:right'| 251 | | style='text-align:right'| 251 | ||
| style='text-align:right'| 104452416 | | style='text-align:right'| 104452416 | ||
| 1496, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1&tanDups=pack&position=KL409846:432608-435600 KL409846:432608-435600] | | 1496, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nipNip1&tanDups=pack&gap=dense&position=KL409846:432608-435600 KL409846:432608-435600] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nipNip1 plot nipNip1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nipNip1 plot nipNip1] | ||
|- | |- | ||
| | | 307 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1 nomLeu1] | ||
Line 4,001: | Line 4,295: | ||
| style='text-align:right'| 2770 | | style='text-align:right'| 2770 | ||
| style='text-align:right'| 8727221218 | | style='text-align:right'| 8727221218 | ||
| 427, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1&tanDups=pack&position=GL397370:1321325-1322179 GL397370:1321325-1322179] | | 427, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu1&tanDups=pack&gap=dense&position=GL397370:1321325-1322179 GL397370:1321325-1322179] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nomLeu1 plot nomLeu1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nomLeu1 plot nomLeu1] | ||
|- | |- | ||
| | | 308 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2 nomLeu2] | ||
Line 4,015: | Line 4,309: | ||
| style='text-align:right'| 2770 | | style='text-align:right'| 2770 | ||
| style='text-align:right'| 8727221218 | | style='text-align:right'| 8727221218 | ||
| 427, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2&tanDups=pack&position=GL397370:1321325-1322179 GL397370:1321325-1322179] | | 427, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu2&tanDups=pack&gap=dense&position=GL397370:1321325-1322179 GL397370:1321325-1322179] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nomLeu2 plot nomLeu2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nomLeu2 plot nomLeu2] | ||
|- | |- | ||
| | | 309 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3] | ||
Line 4,029: | Line 4,323: | ||
| style='text-align:right'| 2776 | | style='text-align:right'| 2776 | ||
| style='text-align:right'| 8748833073 | | style='text-align:right'| 8748833073 | ||
| 427, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3&tanDups=pack&position=chr17:28153188-28154042 chr17:28153188-28154042] | | 427, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3&tanDups=pack&gap=dense&position=chr17:28153188-28154042 chr17:28153188-28154042] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nomLeu3 plot nomLeu3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=nomLeu3 plot nomLeu3] | ||
|- | |- | ||
| | | 310 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1 notCor1] | ||
Line 4,043: | Line 4,337: | ||
| style='text-align:right'| 199 | | style='text-align:right'| 199 | ||
| style='text-align:right'| 393266432 | | style='text-align:right'| 393266432 | ||
| 407, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1&tanDups=pack&position=KL665414:596304-597118 KL665414:596304-597118] | | 407, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=notCor1&tanDups=pack&gap=dense&position=KL665414:596304-597118 KL665414:596304-597118] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=notCor1 plot notCor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=notCor1 plot notCor1] | ||
|- | |- | ||
| | | 311 | ||
| 2008 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri0 ochPri0] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 1112332 | |||
| style='text-align:right'| 39 | |||
| style='text-align:right'| 56228146 | |||
| | |||
| style='text-align:right'| 978 | |||
| style='text-align:right'| 3230892899 | |||
| 340, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri0&tanDups=pack&gap=dense&position=scaffold_108746:3869-4549 scaffold_108746:3869-4549] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ochPri0 plot ochPri0] | |||
|- | |||
| 312 | |||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2 ochPri2] | ||
Line 4,057: | Line 4,365: | ||
| style='text-align:right'| 967 | | style='text-align:right'| 967 | ||
| style='text-align:right'| 3107510489 | | style='text-align:right'| 3107510489 | ||
| 340, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2&tanDups=pack&position=scaffold_108746:3869-4549 scaffold_108746:3869-4549] | | 340, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri2&tanDups=pack&gap=dense&position=scaffold_108746:3869-4549 scaffold_108746:3869-4549] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ochPri2 plot ochPri2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ochPri2 plot ochPri2] | ||
|- | |- | ||
| | | 313 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3] | ||
Line 4,071: | Line 4,379: | ||
| style='text-align:right'| 6664 | | style='text-align:right'| 6664 | ||
| style='text-align:right'| 2042363947 | | style='text-align:right'| 2042363947 | ||
| 5916, 11, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3&tanDups=pack&position=JH802070:23930294-23942136 JH802070:23930294-23942136] | | 5916, 11, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3&tanDups=pack&gap=dense&position=JH802070:23930294-23942136 JH802070:23930294-23942136] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ochPri3 plot ochPri3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ochPri3 plot ochPri3] | ||
|- | |- | ||
| | | 314 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1] | ||
Line 4,085: | Line 4,393: | ||
| style='text-align:right'| 6219 | | style='text-align:right'| 6219 | ||
| style='text-align:right'| 2321422433 | | style='text-align:right'| 2321422433 | ||
| 538, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1&tanDups=pack&position=JH651588:2148235-2149311 JH651588:2148235-2149311] | | 538, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1&tanDups=pack&gap=dense&position=JH651588:2148235-2149311 JH651588:2148235-2149311] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=octDeg1 plot octDeg1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=octDeg1 plot octDeg1] | ||
|- | |- | ||
| | | 315 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1] | ||
Line 4,099: | Line 4,407: | ||
| style='text-align:right'| 7248 | | style='text-align:right'| 7248 | ||
| style='text-align:right'| 3092233269 | | style='text-align:right'| 3092233269 | ||
| 336, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1&tanDups=pack&position=KB228946:1914846-1915518 KB228946:1914846-1915518] | | 336, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1&tanDups=pack&gap=dense&position=KB228946:1914846-1915518 KB228946:1914846-1915518] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=odoRosDiv1 plot odoRosDiv1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=odoRosDiv1 plot odoRosDiv1] | ||
|- | |- | ||
| | | 316 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1 oncVol1] | ||
Line 4,113: | Line 4,421: | ||
| style='text-align:right'| 2124 | | style='text-align:right'| 2124 | ||
| style='text-align:right'| 28089581 | | style='text-align:right'| 28089581 | ||
| 739, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1&tanDups=pack&position=HG738137v1:12037947-12039425 HG738137v1:12037947-12039425] | | 739, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oncVol1&tanDups=pack&gap=dense&position=HG738137v1:12037947-12039425 HG738137v1:12037947-12039425] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oncVol1 plot oncVol1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oncVol1 plot oncVol1] | ||
|- | |- | ||
| | | 317 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1 opiHoa1] | ||
Line 4,127: | Line 4,435: | ||
| style='text-align:right'| 4083 | | style='text-align:right'| 4083 | ||
| style='text-align:right'| 456471575 | | style='text-align:right'| 456471575 | ||
| 1119, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1&tanDups=pack&position=KK734928:246587-248825 KK734928:246587-248825] | | 1119, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=opiHoa1&tanDups=pack&gap=dense&position=KK734928:246587-248825 KK734928:246587-248825] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=opiHoa1 plot opiHoa1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=opiHoa1 plot opiHoa1] | ||
|- | |- | ||
| | | 318 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1] | ||
Line 4,141: | Line 4,449: | ||
| style='text-align:right'| 8151 | | style='text-align:right'| 8151 | ||
| style='text-align:right'| 3040130649 | | style='text-align:right'| 3040130649 | ||
| 4550, 14, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1&tanDups=pack&position=NW_004438537v1:3574224-3583337 NW_004438537v1:3574224-3583337] | | 4550, 14, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1&tanDups=pack&gap=dense&position=NW_004438537v1:3574224-3583337 NW_004438537v1:3574224-3583337] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=orcOrc1 plot orcOrc1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=orcOrc1 plot orcOrc1] | ||
|- | |- | ||
| | | 319 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1] | ||
Line 4,155: | Line 4,463: | ||
| style='text-align:right'| 6067 | | style='text-align:right'| 6067 | ||
| style='text-align:right'| 586359236 | | style='text-align:right'| 586359236 | ||
| 9755, 32, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1&tanDups=pack&position=GL831139:3510855-3530396 GL831139:3510855-3530396] | | 9755, 32, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1&tanDups=pack&gap=dense&position=GL831139:3510855-3530396 GL831139:3510855-3530396] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oreNil1 plot oreNil1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oreNil1 plot oreNil1] | ||
|- | |- | ||
| | | 320 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1] | ||
Line 4,169: | Line 4,477: | ||
| style='text-align:right'| 2857 | | style='text-align:right'| 2857 | ||
| style='text-align:right'| 4750437899 | | style='text-align:right'| 4750437899 | ||
| 279, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1&tanDups=pack&position=Contig10711:4568-5126 Contig10711:4568-5126] | | 279, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1&tanDups=pack&gap=dense&position=Contig10711:4568-5126 Contig10711:4568-5126] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ornAna1 plot ornAna1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ornAna1 plot ornAna1] | ||
|- | |- | ||
| | | 321 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2] | ||
Line 4,183: | Line 4,491: | ||
| style='text-align:right'| 2857 | | style='text-align:right'| 2857 | ||
| style='text-align:right'| 4750437899 | | style='text-align:right'| 4750437899 | ||
| 279, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2&tanDups=pack&position=chrUn_DS187984v1:4568-5126 chrUn_DS187984v1:4568-5126] | | 279, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2&tanDups=pack&gap=dense&position=chrUn_DS187984v1:4568-5126 chrUn_DS187984v1:4568-5126] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ornAna2 plot ornAna2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ornAna2 plot ornAna2] | ||
|- | |- | ||
| | | 322 | ||
| 2012 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000298275.1/ GCF_000298275.1] | |||
| allpaths v. R40776 LITTLE_HELPS_BIG=False | |||
| style='text-align:right'| 723185 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 29823049 | |||
| | |||
| style='text-align:right'| 7910 | |||
| style='text-align:right'| 6135084152 | |||
| 201, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1&tanDups=pack&gap=dense&position=JH863815:9524393-9524795 JH863815:9524393-9524795] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryAfe1 plot oryAfe1] | |||
|- | |||
| 323 | |||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun1 oryCun1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun1 oryCun1] | ||
Line 4,197: | Line 4,519: | ||
| style='text-align:right'| 1631 | | style='text-align:right'| 1631 | ||
| style='text-align:right'| 1966576432 | | style='text-align:right'| 1966576432 | ||
| 355, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun1&tanDups=pack&position=scaffold_215240:74823-75533 scaffold_215240:74823-75533] | | 355, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun1&tanDups=pack&gap=dense&position=scaffold_215240:74823-75533 scaffold_215240:74823-75533] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryCun1 plot oryCun1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryCun1 plot oryCun1] | ||
|- | |- | ||
| | | 324 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2] | ||
Line 4,211: | Line 4,533: | ||
| style='text-align:right'| 7982 | | style='text-align:right'| 7982 | ||
| style='text-align:right'| 8671655620 | | style='text-align:right'| 8671655620 | ||
| 355, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2&tanDups=pack&position=chrX:61423000-61423710 chrX:61423000-61423710] | | 355, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2&tanDups=pack&gap=dense&position=chrX:61423000-61423710 chrX:61423000-61423710] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryCun2 plot oryCun2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryCun2 plot oryCun2] | ||
|- | |- | ||
| | | 325 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1 oryLat1] | ||
Line 4,225: | Line 4,547: | ||
| style='text-align:right'| 1210 | | style='text-align:right'| 1210 | ||
| style='text-align:right'| 620191379 | | style='text-align:right'| 620191379 | ||
| 379, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1&tanDups=pack&position=chr9:5041681-5042439 chr9:5041681-5042439] | | 379, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat1&tanDups=pack&gap=dense&position=chr9:5041681-5042439 chr9:5041681-5042439] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat1 plot oryLat1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat1 plot oryLat1] | ||
|- | |- | ||
| | | 326 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2] | ||
Line 4,239: | Line 4,561: | ||
| style='text-align:right'| 1234 | | style='text-align:right'| 1234 | ||
| style='text-align:right'| 592910738 | | style='text-align:right'| 592910738 | ||
| 379, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2&tanDups=pack&position=chr9:5041681-5042439 chr9:5041681-5042439] | | 379, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2&tanDups=pack&gap=dense&position=chr9:5041681-5042439 chr9:5041681-5042439] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat2 plot oryLat2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oryLat2 plot oryLat2] | ||
|- | |- | ||
| | | 327 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar1 otoGar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar1 otoGar1] | ||
Line 4,253: | Line 4,575: | ||
| style='text-align:right'| 3169 | | style='text-align:right'| 3169 | ||
| style='text-align:right'| 1564679906 | | style='text-align:right'| 1564679906 | ||
| 371, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar1&tanDups=pack&position=scaffold_95742.1-347136:293478-294220 scaffold_95742.1-347136:293478-294220] | | 371, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar1&tanDups=pack&gap=dense&position=scaffold_95742.1-347136:293478-294220 scaffold_95742.1-347136:293478-294220] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=otoGar1 plot otoGar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=otoGar1 plot otoGar1] | ||
|- | |- | ||
| | | 328 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3] | ||
Line 4,267: | Line 4,589: | ||
| style='text-align:right'| 5408 | | style='text-align:right'| 5408 | ||
| style='text-align:right'| 2796782144 | | style='text-align:right'| 2796782144 | ||
| 7275, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3&tanDups=pack&position=GL873525:45030822-45045391 GL873525:45030822-45045391] | | 7275, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3&tanDups=pack&gap=dense&position=GL873525:45030822-45045391 GL873525:45030822-45045391] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=otoGar3 plot otoGar3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=otoGar3 plot otoGar3] | ||
|- | |- | ||
| | | 329 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1 oviAri1] | ||
Line 4,281: | Line 4,603: | ||
| style='text-align:right'| 214 | | style='text-align:right'| 214 | ||
| style='text-align:right'| 36573585 | | style='text-align:right'| 36573585 | ||
| 264, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1&tanDups=pack&position=chr15:8985870-8986398 chr15:8985870-8986398] | | 264, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri1&tanDups=pack&gap=dense&position=chr15:8985870-8986398 chr15:8985870-8986398] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oviAri1 plot oviAri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oviAri1 plot oviAri1] | ||
|- | |- | ||
| | | 330 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3] | ||
Line 4,295: | Line 4,617: | ||
| style='text-align:right'| 7004 | | style='text-align:right'| 7004 | ||
| style='text-align:right'| 6099422199 | | style='text-align:right'| 6099422199 | ||
| 7782, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3&tanDups=pack&position=chr21:31441666-31457230 chr21:31441666-31457230] | | 7782, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3&tanDups=pack&gap=dense&position=chr21:31441666-31457230 chr21:31441666-31457230] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oviAri3 plot oviAri3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=oviAri3 plot oviAri3] | ||
|- | |- | ||
| | | 331 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1] | ||
Line 4,309: | Line 4,631: | ||
| style='text-align:right'| 8191 | | style='text-align:right'| 8191 | ||
| style='text-align:right'| 4466818919 | | style='text-align:right'| 4466818919 | ||
| 3120, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1&tanDups=pack&position=KE108970:1986445-1992685 KE108970:1986445-1992685] | | 3120, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1&tanDups=pack&gap=dense&position=KE108970:1986445-1992685 KE108970:1986445-1992685] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panHod1 plot panHod1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panHod1 plot panHod1] | ||
|- | |- | ||
| | | 332 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1] | ||
Line 4,323: | Line 4,645: | ||
| style='text-align:right'| 7453 | | style='text-align:right'| 7453 | ||
| style='text-align:right'| 5965856446 | | style='text-align:right'| 5965856446 | ||
| 156, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1&tanDups=pack&position=JH650446:7527934-7528246 JH650446:7527934-7528246] | | 156, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1&tanDups=pack&gap=dense&position=JH650446:7527934-7528246 JH650446:7527934-7528246] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panPan1 plot panPan1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panPan1 plot panPan1] | ||
|- | |- | ||
| | | 333 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan2 panPan2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan2 panPan2] | ||
Line 4,337: | Line 4,659: | ||
| style='text-align:right'| 7450 | | style='text-align:right'| 7450 | ||
| style='text-align:right'| 5967745842 | | style='text-align:right'| 5967745842 | ||
| 167, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan2&tanDups=pack&position=chr19:49401130-49401464 chr19:49401130-49401464] | | 167, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan2&tanDups=pack&gap=dense&position=chr19:49401130-49401464 chr19:49401130-49401464] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panPan2 plot panPan2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panPan2 plot panPan2] | ||
|- | |- | ||
| | | 334 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1 panRed1] | ||
Line 4,351: | Line 4,673: | ||
| style='text-align:right'| 1396 | | style='text-align:right'| 1396 | ||
| style='text-align:right'| 66559726 | | style='text-align:right'| 66559726 | ||
| 101, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1&tanDups=pack&position=KB454925:8492-8694 KB454925:8492-8694] | | 101, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panRed1&tanDups=pack&gap=dense&position=KB454925:8492-8694 KB454925:8492-8694] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panRed1 plot panRed1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panRed1 plot panRed1] | ||
|- | |- | ||
| | | 335 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTig1 panTig1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTig1 panTig1] | ||
Line 4,365: | Line 4,687: | ||
| style='text-align:right'| 7625 | | style='text-align:right'| 7625 | ||
| style='text-align:right'| 2368098055 | | style='text-align:right'| 2368098055 | ||
| 1135, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTig1&tanDups=pack&position=KE721593:7259595-7261865 KE721593:7259595-7261865] | | 1135, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTig1&tanDups=pack&gap=dense&position=KE721593:7259595-7261865 KE721593:7259595-7261865] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTig1 plot panTig1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTig1 plot panTig1] | ||
|- | |- | ||
| | | 336 | ||
| 2003 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro1 panTro1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 808650 | |||
| style='text-align:right'| 33 | |||
| style='text-align:right'| 35210172 | |||
| | |||
| style='text-align:right'| 5887 | |||
| style='text-align:right'| 5843608490 | |||
| 200, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro1&tanDups=pack&gap=dense&position=chr2:110339092-110339492 chr2:110339092-110339492] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro1 plot panTro1] | |||
|- | |||
| 337 | |||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro2 panTro2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro2 panTro2] | ||
Line 4,379: | Line 4,715: | ||
| style='text-align:right'| 4272 | | style='text-align:right'| 4272 | ||
| style='text-align:right'| 9139837465 | | style='text-align:right'| 9139837465 | ||
| 200, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro2&tanDups=pack&position=chr3:111771142-111771542 chr3:111771142-111771542] | | 200, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro2&tanDups=pack&gap=dense&position=chr3:111771142-111771542 chr3:111771142-111771542] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro2 plot panTro2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro2 plot panTro2] | ||
|- | |- | ||
| | | 338 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro3 panTro3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro3 panTro3] | ||
Line 4,393: | Line 4,729: | ||
| style='text-align:right'| 4651 | | style='text-align:right'| 4651 | ||
| style='text-align:right'| 8652075091 | | style='text-align:right'| 8652075091 | ||
| 15941, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro3&tanDups=pack&position=chrX:43654981-43686878 chrX:43654981-43686878] | | 15941, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro3&tanDups=pack&gap=dense&position=chrX:43654981-43686878 chrX:43654981-43686878] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro3 plot panTro3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro3 plot panTro3] | ||
|- | |- | ||
| | | 339 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4] | ||
Line 4,407: | Line 4,743: | ||
| style='text-align:right'| 4652 | | style='text-align:right'| 4652 | ||
| style='text-align:right'| 8665203604 | | style='text-align:right'| 8665203604 | ||
| 15941, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4&tanDups=pack&position=chrX:43654981-43686878 chrX:43654981-43686878] | | 15941, 16, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4&tanDups=pack&gap=dense&position=chrX:43654981-43686878 chrX:43654981-43686878] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro4 plot panTro4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro4 plot panTro4] | ||
|- | |- | ||
| | | 340 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro5 panTro5] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro5 panTro5] | ||
Line 4,421: | Line 4,757: | ||
| style='text-align:right'| 3609 | | style='text-align:right'| 3609 | ||
| style='text-align:right'| 11734910613 | | style='text-align:right'| 11734910613 | ||
| 4127, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro5&tanDups=pack&position=chr7_NW_015973370v1_random:285172-293435 chr7_NW_015973370v1_random:285172-293435] | | 4127, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro5&tanDups=pack&gap=dense&position=chr7_NW_015973370v1_random:285172-293435 chr7_NW_015973370v1_random:285172-293435] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro5 plot panTro5] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=panTro5 plot panTro5] | ||
|- | |- | ||
| | | 341 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2] | ||
Line 4,435: | Line 4,771: | ||
| style='text-align:right'| 1823 | | style='text-align:right'| 1823 | ||
| style='text-align:right'| 9407152119 | | style='text-align:right'| 9407152119 | ||
| 616, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2&tanDups=pack&position=chr11:83077338-83078570 chr11:83077338-83078570] | | 616, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2&tanDups=pack&gap=dense&position=chr11:83077338-83078570 chr11:83077338-83078570] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=papAnu2 plot papAnu2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=papAnu2 plot papAnu2] | ||
|- | |- | ||
| | | 342 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1 papHam1] | ||
Line 4,449: | Line 4,785: | ||
| style='text-align:right'| 3309 | | style='text-align:right'| 3309 | ||
| style='text-align:right'| 3807206084 | | style='text-align:right'| 3807206084 | ||
| 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1&tanDups=pack&position=Contig28428:39-723 Contig28428:39-723] | | 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papHam1&tanDups=pack&gap=dense&position=Contig28428:39-723 Contig28428:39-723] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=papHam1 plot papHam1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=papHam1 plot papHam1] | ||
|- | |- | ||
| | | 343 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1 pelCri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1 pelCri1] | ||
Line 4,463: | Line 4,799: | ||
| style='text-align:right'| 265 | | style='text-align:right'| 265 | ||
| style='text-align:right'| 127612523 | | style='text-align:right'| 127612523 | ||
| 574, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1&tanDups=pack&position=KK474798:35527-36675 KK474798:35527-36675] | | 574, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelCri1&tanDups=pack&gap=dense&position=KK474798:35527-36675 KK474798:35527-36675] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelCri1 plot pelCri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelCri1 plot pelCri1] | ||
|- | |- | ||
| | | 344 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1] | ||
Line 4,477: | Line 4,813: | ||
| style='text-align:right'| 2114.5 | | style='text-align:right'| 2114.5 | ||
| style='text-align:right'| 1334725849 | | style='text-align:right'| 1334725849 | ||
| 4166, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1&tanDups=pack&position=JH210925:2745573-2753905 JH210925:2745573-2753905] | | 4166, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1&tanDups=pack&gap=dense&position=JH210925:2745573-2753905 JH210925:2745573-2753905] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelSin1 plot pelSin1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pelSin1 plot pelSin1] | ||
|- | |- | ||
| | | 345 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1 perManBai1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1 perManBai1] | ||
Line 4,491: | Line 4,827: | ||
| style='text-align:right'| 3501 | | style='text-align:right'| 3501 | ||
| style='text-align:right'| 4676973953 | | style='text-align:right'| 4676973953 | ||
| 266, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1&tanDups=pack&position=KI615341:3157564-3158096 KI615341:3157564-3158096] | | 266, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=perManBai1&tanDups=pack&gap=dense&position=KI615341:3157564-3158096 KI615341:3157564-3158096] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=perManBai1 plot perManBai1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=perManBai1 plot perManBai1] | ||
|- | |- | ||
| | | 346 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1 petMar1] | ||
Line 4,505: | Line 4,841: | ||
| style='text-align:right'| 201 | | style='text-align:right'| 201 | ||
| style='text-align:right'| 932728649 | | style='text-align:right'| 932728649 | ||
| 362, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1&tanDups=pack&position=Contig99174:237-961 Contig99174:237-961] | | 362, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar1&tanDups=pack&gap=dense&position=Contig99174:237-961 Contig99174:237-961] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar1 plot petMar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar1 plot petMar1] | ||
|- | |- | ||
| | | 347 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2] | ||
Line 4,519: | Line 4,855: | ||
| style='text-align:right'| 692 | | style='text-align:right'| 692 | ||
| style='text-align:right'| 2324558773 | | style='text-align:right'| 2324558773 | ||
| 363, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2&tanDups=pack&position=GL498477:1987-2713 GL498477:1987-2713] | | 363, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2&tanDups=pack&gap=dense&position=GL498477:1987-2713 GL498477:1987-2713] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar2 plot petMar2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=petMar2 plot petMar2] | ||
|- | |- | ||
| | | 348 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1 phaCar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1 phaCar1] | ||
Line 4,533: | Line 4,869: | ||
| style='text-align:right'| 36 | | style='text-align:right'| 36 | ||
| style='text-align:right'| 26355615 | | style='text-align:right'| 26355615 | ||
| 779, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1&tanDups=pack&position=KL418261:30029-31587 KL418261:30029-31587] | | 779, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaCar1&tanDups=pack&gap=dense&position=KL418261:30029-31587 KL418261:30029-31587] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaCar1 plot phaCar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaCar1 plot phaCar1] | ||
|- | |- | ||
| | | 349 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1 phaLep1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1 phaLep1] | ||
Line 4,547: | Line 4,883: | ||
| style='text-align:right'| 216 | | style='text-align:right'| 216 | ||
| style='text-align:right'| 85779441 | | style='text-align:right'| 85779441 | ||
| 1077, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1&tanDups=pack&position=KK455387:47187-49341 KK455387:47187-49341] | | 1077, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phaLep1&tanDups=pack&gap=dense&position=KK455387:47187-49341 KK455387:47187-49341] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaLep1 plot phaLep1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phaLep1 plot phaLep1] | ||
|- | |- | ||
| | | 350 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1 phoRub1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1 phoRub1] | ||
Line 4,561: | Line 4,897: | ||
| style='text-align:right'| 135 | | style='text-align:right'| 135 | ||
| style='text-align:right'| 39934970 | | style='text-align:right'| 39934970 | ||
| 526, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1&tanDups=pack&position=KK424259:7588-8640 KK424259:7588-8640] | | 526, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phoRub1&tanDups=pack&gap=dense&position=KK424259:7588-8640 KK424259:7588-8640] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phoRub1 plot phoRub1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phoRub1 plot phoRub1] | ||
|- | |- | ||
| | | 351 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1 phyCat1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1 phyCat1] | ||
Line 4,575: | Line 4,911: | ||
| style='text-align:right'| 8197 | | style='text-align:right'| 8197 | ||
| style='text-align:right'| 2241115729 | | style='text-align:right'| 2241115729 | ||
| 5565, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1&tanDups=pack&position=KI411098:797892-809022 KI411098:797892-809022] | | 5565, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=phyCat1&tanDups=pack&gap=dense&position=KI411098:797892-809022 KI411098:797892-809022] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phyCat1 plot phyCat1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=phyCat1 plot phyCat1] | ||
|- | |- | ||
| | | 352 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1 picPub1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1 picPub1] | ||
Line 4,589: | Line 4,925: | ||
| style='text-align:right'| 7796 | | style='text-align:right'| 7796 | ||
| style='text-align:right'| 3299119050 | | style='text-align:right'| 3299119050 | ||
| 4915, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1&tanDups=pack&position=KL215520:252741-262573 KL215520:252741-262573] | | 4915, 3, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=picPub1&tanDups=pack&gap=dense&position=KL215520:252741-262573 KL215520:252741-262573] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=picPub1 plot picPub1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=picPub1 plot picPub1] | ||
|- | |- | ||
| | | 353 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1 poeFor1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1 poeFor1] | ||
Line 4,603: | Line 4,939: | ||
| style='text-align:right'| 4650 | | style='text-align:right'| 4650 | ||
| style='text-align:right'| 990605574 | | style='text-align:right'| 990605574 | ||
| 1886, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1&tanDups=pack&position=KI520679:7484-11256 KI520679:7484-11256] | | 1886, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeFor1&tanDups=pack&gap=dense&position=KI520679:7484-11256 KI520679:7484-11256] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeFor1 plot poeFor1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeFor1 plot poeFor1] | ||
|- | |- | ||
| | | 354 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1 poeRet1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1 poeRet1] | ||
Line 4,617: | Line 4,953: | ||
| style='text-align:right'| 1511 | | style='text-align:right'| 1511 | ||
| style='text-align:right'| 343849361 | | style='text-align:right'| 343849361 | ||
| 8790, 4, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1&tanDups=pack&position=chrLG5:27506035-27523618 chrLG5:27506035-27523618] | | 8790, 4, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=poeRet1&tanDups=pack&gap=dense&position=chrLG5:27506035-27523618 chrLG5:27506035-27523618] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeRet1 plot poeRet1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=poeRet1 plot poeRet1] | ||
|- | |- | ||
| | | 355 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe1 ponAbe1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe1 ponAbe1] | ||
Line 4,631: | Line 4,967: | ||
| style='text-align:right'| 3928 | | style='text-align:right'| 3928 | ||
| style='text-align:right'| 8754202217 | | style='text-align:right'| 8754202217 | ||
| 285, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe1&tanDups=pack&position=Contig811:16977-17547 Contig811:16977-17547] | | 285, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe1&tanDups=pack&gap=dense&position=Contig811:16977-17547 Contig811:16977-17547] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ponAbe1 plot ponAbe1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ponAbe1 plot ponAbe1] | ||
|- | |- | ||
| | | 356 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2 ponAbe2] | ||
Line 4,645: | Line 4,981: | ||
| style='text-align:right'| 4659 | | style='text-align:right'| 4659 | ||
| style='text-align:right'| 11283067110 | | style='text-align:right'| 11283067110 | ||
| 769, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2&tanDups=pack&position=chr11:46659515-46661053 chr11:46659515-46661053] | | 769, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ponAbe2&tanDups=pack&gap=dense&position=chr11:46659515-46661053 chr11:46659515-46661053] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ponAbe2 plot ponAbe2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ponAbe2 plot ponAbe2] | ||
|- | |- | ||
| | | 357 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1 priExs1] | ||
Line 4,659: | Line 4,995: | ||
| style='text-align:right'| 1128 | | style='text-align:right'| 1128 | ||
| style='text-align:right'| 98936342 | | style='text-align:right'| 98936342 | ||
| 1626, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1&tanDups=pack&position=scaffold830:51430-54682 scaffold830:51430-54682] | | 1626, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priExs1&tanDups=pack&gap=dense&position=scaffold830:51430-54682 scaffold830:51430-54682] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priExs1 plot priExs1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priExs1 plot priExs1] | ||
|- | |- | ||
| | | 358 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1 priPac1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1 priPac1] | ||
Line 4,673: | Line 5,009: | ||
| style='text-align:right'| 448 | | style='text-align:right'| 448 | ||
| style='text-align:right'| 80615899 | | style='text-align:right'| 80615899 | ||
| 500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1&tanDups=pack&position=chrUn:71534792-71535792 chrUn:71534792-71535792] | | 500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac1&tanDups=pack&gap=dense&position=chrUn:71534792-71535792 chrUn:71534792-71535792] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac1 plot priPac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac1 plot priPac1] | ||
|- | |- | ||
| | | 359 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2 priPac2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2 priPac2] | ||
Line 4,687: | Line 5,023: | ||
| style='text-align:right'| 259 | | style='text-align:right'| 259 | ||
| style='text-align:right'| 25863820 | | style='text-align:right'| 25863820 | ||
| 500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2&tanDups=pack&position=ABKE01002096:3239-4239 ABKE01002096:3239-4239] | | 500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac2&tanDups=pack&gap=dense&position=ABKE01002096:3239-4239 ABKE01002096:3239-4239] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac2 plot priPac2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac2 plot priPac2] | ||
|- | |- | ||
| | | 360 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3 priPac3] | ||
Line 4,701: | Line 5,037: | ||
| style='text-align:right'| 321 | | style='text-align:right'| 321 | ||
| style='text-align:right'| 82136541 | | style='text-align:right'| 82136541 | ||
| 500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3&tanDups=pack&position=Ppa_Contig5:941324-942324 Ppa_Contig5:941324-942324] | | 500, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=priPac3&tanDups=pack&gap=dense&position=Ppa_Contig5:941324-942324 Ppa_Contig5:941324-942324] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac3 plot priPac3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=priPac3 plot priPac3] | ||
|- | |- | ||
| | | 361 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1 proCap1] | ||
Line 4,715: | Line 5,051: | ||
| style='text-align:right'| 935 | | style='text-align:right'| 935 | ||
| style='text-align:right'| 440411229 | | style='text-align:right'| 440411229 | ||
| 254, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1&tanDups=pack&position=scaffold_6350:37640-38148 scaffold_6350:37640-38148] | | 254, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=proCap1&tanDups=pack&gap=dense&position=scaffold_6350:37640-38148 scaffold_6350:37640-38148] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=proCap1 plot proCap1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=proCap1 plot proCap1] | ||
|- | |- | ||
| | | 362 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1] | ||
Line 4,729: | Line 5,065: | ||
| style='text-align:right'| 130 | | style='text-align:right'| 130 | ||
| style='text-align:right'| 200423267 | | style='text-align:right'| 200423267 | ||
| 7517, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1&tanDups=pack&position=KB221191:4083820-4098863 KB221191:4083820-4098863] | | 7517, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1&tanDups=pack&gap=dense&position=KB221191:4083820-4098863 KB221191:4083820-4098863] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pseHum1 plot pseHum1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pseHum1 plot pseHum1] | ||
|- | |- | ||
| | | 363 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1] | ||
Line 4,743: | Line 5,079: | ||
| style='text-align:right'| 223 | | style='text-align:right'| 223 | ||
| style='text-align:right'| 316324647 | | style='text-align:right'| 316324647 | ||
| 1333, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1&tanDups=pack&position=KB031158:55901168-55903834 KB031158:55901168-55903834] | | 1333, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1&tanDups=pack&gap=dense&position=KB031158:55901168-55903834 KB031158:55901168-55903834] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteAle1 plot pteAle1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteAle1 plot pteAle1] | ||
|- | |- | ||
| | | 364 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1 pteGut1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1 pteGut1] | ||
Line 4,757: | Line 5,093: | ||
| style='text-align:right'| 100 | | style='text-align:right'| 100 | ||
| style='text-align:right'| 106772284 | | style='text-align:right'| 106772284 | ||
| 534, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1&tanDups=pack&position=JMFR01060883:1891-2959 JMFR01060883:1891-2959] | | 534, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteGut1&tanDups=pack&gap=dense&position=JMFR01060883:1891-2959 JMFR01060883:1891-2959] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteGut1 plot pteGut1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteGut1 plot pteGut1] | ||
|- | |- | ||
| | | 365 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ptePar1 ptePar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ptePar1 ptePar1] | ||
Line 4,771: | Line 5,107: | ||
| style='text-align:right'| 268 | | style='text-align:right'| 268 | ||
| style='text-align:right'| 31185376 | | style='text-align:right'| 31185376 | ||
| 1327, 6, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ptePar1&tanDups=pack&position=AWGZ01430664:1-2660 AWGZ01430664:1-2660] | | 1327, 6, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ptePar1&tanDups=pack&gap=dense&position=AWGZ01430664:1-2660 AWGZ01430664:1-2660] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ptePar1 plot ptePar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ptePar1 plot ptePar1] | ||
|- | |- | ||
| | | 366 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1] | ||
Line 4,785: | Line 5,121: | ||
| style='text-align:right'| 1547 | | style='text-align:right'| 1547 | ||
| style='text-align:right'| 867093676 | | style='text-align:right'| 867093676 | ||
| 194, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1&tanDups=pack&position=scaffold_275:208852-209240 scaffold_275:208852-209240] | | 194, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1&tanDups=pack&gap=dense&position=scaffold_275:208852-209240 scaffold_275:208852-209240] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteVam1 plot pteVam1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pteVam1 plot pteVam1] | ||
|- | |- | ||
| | | 367 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1] | ||
Line 4,799: | Line 5,135: | ||
| style='text-align:right'| 3630 | | style='text-align:right'| 3630 | ||
| style='text-align:right'| 214952201 | | style='text-align:right'| 214952201 | ||
| 5131, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1&tanDups=pack&position=JH419262:1608400-1618681 JH419262:1608400-1618681] | | 5131, 20, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1&tanDups=pack&gap=dense&position=JH419262:1608400-1618681 JH419262:1608400-1618681] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=punNye1 plot punNye1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=punNye1 plot punNye1] | ||
|- | |- | ||
| | | 368 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1 pygAde1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1 pygAde1] | ||
Line 4,813: | Line 5,149: | ||
| style='text-align:right'| 2165.5 | | style='text-align:right'| 2165.5 | ||
| style='text-align:right'| 202245057 | | style='text-align:right'| 202245057 | ||
| 2147, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1&tanDups=pack&position=KL225502:93242-97536 KL225502:93242-97536] | | 2147, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pygAde1&tanDups=pack&gap=dense&position=KL225502:93242-97536 KL225502:93242-97536] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pygAde1 plot pygAde1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pygAde1 plot pygAde1] | ||
|- | |- | ||
| | | 369 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1 pytBiv1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1 pytBiv1] | ||
Line 4,827: | Line 5,163: | ||
| style='text-align:right'| 217 | | style='text-align:right'| 217 | ||
| style='text-align:right'| 396468667 | | style='text-align:right'| 396468667 | ||
| 235, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1&tanDups=pack&position=KE953144:259222-259692 KE953144:259222-259692] | | 235, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pytBiv1&tanDups=pack&gap=dense&position=KE953144:259222-259692 KE953144:259222-259692] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pytBiv1 plot pytBiv1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=pytBiv1 plot pytBiv1] | ||
|- | |- | ||
| | | 370 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0 repBase0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0 repBase0] | ||
Line 4,841: | Line 5,177: | ||
| style='text-align:right'| 81.5 | | style='text-align:right'| 81.5 | ||
| style='text-align:right'| 7619 | | style='text-align:right'| 7619 | ||
| 70, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0&tanDups=pack&position=MER51A:232-372 MER51A:232-372] | | 70, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase0&tanDups=pack&gap=dense&position=MER51A:232-372 MER51A:232-372] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase0 plot repBase0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase0 plot repBase0] | ||
|- | |- | ||
| | | 371 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1 repBase1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1 repBase1] | ||
Line 4,855: | Line 5,191: | ||
| style='text-align:right'| 77 | | style='text-align:right'| 77 | ||
| style='text-align:right'| 9691 | | style='text-align:right'| 9691 | ||
| 70, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1&tanDups=pack&position=MER51A:232-372 MER51A:232-372] | | 70, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase1&tanDups=pack&gap=dense&position=MER51A:232-372 MER51A:232-372] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase1 plot repBase1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase1 plot repBase1] | ||
|- | |- | ||
| | | 372 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase2 repBase2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase2 repBase2] | ||
Line 4,869: | Line 5,205: | ||
| style='text-align:right'| 79 | | style='text-align:right'| 79 | ||
| style='text-align:right'| 6907 | | style='text-align:right'| 6907 | ||
| 70, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase2&tanDups=pack&position=MER51A:232-372 MER51A:232-372] | | 70, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=repBase2&tanDups=pack&gap=dense&position=MER51A:232-372 MER51A:232-372] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase2 plot repBase2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=repBase2 plot repBase2] | ||
|- | |- | ||
| | | 374 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac1 rheMac1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac1 rheMac1] | ||
Line 4,883: | Line 5,219: | ||
| style='text-align:right'| 3903 | | style='text-align:right'| 3903 | ||
| style='text-align:right'| 4022554742 | | style='text-align:right'| 4022554742 | ||
| 166, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac1&tanDups=pack&position=SCAFFOLD105044:90895-91227 SCAFFOLD105044:90895-91227] | | 166, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac1&tanDups=pack&gap=dense&position=SCAFFOLD105044:90895-91227 SCAFFOLD105044:90895-91227] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac1 plot rheMac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac1 plot rheMac1] | ||
|- | |- | ||
| | | 375 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3] | ||
Line 4,897: | Line 5,233: | ||
| style='text-align:right'| 6165 | | style='text-align:right'| 6165 | ||
| style='text-align:right'| 4578985642 | | style='text-align:right'| 4578985642 | ||
| 1652, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3&tanDups=pack&position=chr7:163447756-163451061 chr7:163447756-163451061] | | 1652, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3&tanDups=pack&gap=dense&position=chr7:163447756-163451061 chr7:163447756-163451061] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac3 plot rheMac3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac3 plot rheMac3] | ||
|- | |- | ||
| | | 376 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8] | ||
Line 4,911: | Line 5,247: | ||
| style='text-align:right'| 652 | | style='text-align:right'| 652 | ||
| style='text-align:right'| 9828434554 | | style='text-align:right'| 9828434554 | ||
| 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8&tanDups=pack&position=chrUn_NW_014851878v1:101-785 chrUn_NW_014851878v1:101-785] | | 342, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8&tanDups=pack&gap=dense&position=chrUn_NW_014851878v1:101-785 chrUn_NW_014851878v1:101-785] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac8 plot rheMac8] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rheMac8 plot rheMac8] | ||
|- | |- | ||
| | | 377 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1 rhiBie1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1 rhiBie1] | ||
Line 4,925: | Line 5,261: | ||
| style='text-align:right'| 5459 | | style='text-align:right'| 5459 | ||
| style='text-align:right'| 6210031772 | | style='text-align:right'| 6210031772 | ||
| 1941, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1&tanDups=pack&position=NW_016810765v1:2055509-2059391 NW_016810765v1:2055509-2059391] | | 1941, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiBie1&tanDups=pack&gap=dense&position=NW_016810765v1:2055509-2059391 NW_016810765v1:2055509-2059391] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiBie1 plot rhiBie1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiBie1 plot rhiBie1] | ||
|- | |- | ||
| | | 378 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1 rhiFer1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1 rhiFer1] | ||
Line 4,939: | Line 5,275: | ||
| style='text-align:right'| 174 | | style='text-align:right'| 174 | ||
| style='text-align:right'| 41741562 | | style='text-align:right'| 41741562 | ||
| 172, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1&tanDups=pack&position=AWHA01239258:1699-2043 AWHA01239258:1699-2043] | | 172, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiFer1&tanDups=pack&gap=dense&position=AWHA01239258:1699-2043 AWHA01239258:1699-2043] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiFer1 plot rhiFer1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiFer1 plot rhiFer1] | ||
|- | |- | ||
| | | 379 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1 rhiRox1] | ||
Line 4,953: | Line 5,289: | ||
| style='text-align:right'| 6393 | | style='text-align:right'| 6393 | ||
| style='text-align:right'| 8021193204 | | style='text-align:right'| 8021193204 | ||
| 11652, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1&tanDups=pack&position=KN294251v1:31824-55128 KN294251v1:31824-55128] | | 11652, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rhiRox1&tanDups=pack&gap=dense&position=KN294251v1:31824-55128 KN294251v1:31824-55128] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiRox1 plot rhiRox1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rhiRox1 plot rhiRox1] | ||
|- | |- | ||
| | | 380 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ricCom1 ricCom1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ricCom1 ricCom1] | ||
Line 4,967: | Line 5,303: | ||
| style='text-align:right'| 2948 | | style='text-align:right'| 2948 | ||
| style='text-align:right'| 2156357980 | | style='text-align:right'| 2156357980 | ||
| 460, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ricCom1&tanDups=pack&position=EQ974418:17730-18650 EQ974418:17730-18650] | | 460, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ricCom1&tanDups=pack&gap=dense&position=EQ974418:17730-18650 EQ974418:17730-18650] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ricCom1 plot ricCom1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ricCom1 plot ricCom1] | ||
|- | |- | ||
| | | 381 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn3 rn3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn3 rn3] | ||
Line 4,981: | Line 5,317: | ||
| style='text-align:right'| 5386 | | style='text-align:right'| 5386 | ||
| style='text-align:right'| 8488809019 | | style='text-align:right'| 8488809019 | ||
| 230, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn3&tanDups=pack&position=chr1:37917795-37918255 chr1:37917795-37918255] | | 230, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn3&tanDups=pack&gap=dense&position=chr1:37917795-37918255 chr1:37917795-37918255] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rn3 plot rn3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rn3 plot rn3] | ||
|- | |- | ||
| | | 382 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4 rn4] | ||
Line 4,995: | Line 5,331: | ||
| style='text-align:right'| 5409 | | style='text-align:right'| 5409 | ||
| style='text-align:right'| 8492561356 | | style='text-align:right'| 8492561356 | ||
| 230, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4&tanDups=pack&position=chr1:37914850-37915310 chr1:37914850-37915310] | | 230, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn4&tanDups=pack&gap=dense&position=chr1:37914850-37915310 chr1:37914850-37915310] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rn4 plot rn4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rn4 plot rn4] | ||
|- | |- | ||
| | | 383 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1 rouAeg1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1 rouAeg1] | ||
Line 5,009: | Line 5,345: | ||
| style='text-align:right'| 5517 | | style='text-align:right'| 5517 | ||
| style='text-align:right'| 522939887 | | style='text-align:right'| 522939887 | ||
| 410, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1&tanDups=pack&position=NW_015493119v1:122550-123371 NW_015493119v1:122550-123371] | | 410, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rouAeg1&tanDups=pack&gap=dense&position=NW_015493119v1:122550-123371 NW_015493119v1:122550-123371] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rouAeg1 plot rouAeg1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=rouAeg1 plot rouAeg1] | ||
|- | |- | ||
| | | 384 | ||
| 2003 | | 2003 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1 sacCer1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1 sacCer1] | ||
Line 5,023: | Line 5,359: | ||
| style='text-align:right'| 1914.5 | | style='text-align:right'| 1914.5 | ||
| style='text-align:right'| 2711249 | | style='text-align:right'| 2711249 | ||
| 50, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1&tanDups=pack&position=chr7:519107-519207 chr7:519107-519207] | | 50, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer1&tanDups=pack&gap=dense&position=chr7:519107-519207 chr7:519107-519207] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer1 plot sacCer1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer1 plot sacCer1] | ||
|- | |- | ||
| | | 385 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2 sacCer2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2 sacCer2] | ||
Line 5,037: | Line 5,373: | ||
| style='text-align:right'| 1868 | | style='text-align:right'| 1868 | ||
| style='text-align:right'| 2711600 | | style='text-align:right'| 2711600 | ||
| 71, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2&tanDups=pack&position=chrX:120898-121040 chrX:120898-121040] | | 71, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer2&tanDups=pack&gap=dense&position=chrX:120898-121040 chrX:120898-121040] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer2 plot sacCer2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer2 plot sacCer2] | ||
|- | |- | ||
| | | 386 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3] | ||
Line 5,051: | Line 5,387: | ||
| style='text-align:right'| 1868 | | style='text-align:right'| 1868 | ||
| style='text-align:right'| 2711582 | | style='text-align:right'| 2711582 | ||
| 1988, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3&tanDups=pack&position=chrVIII:212266-216251 chrVIII:212266-216251] | | 1988, 10, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3&tanDups=pack&gap=dense&position=chrVIII:212266-216251 chrVIII:212266-216251] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer3 plot sacCer3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sacCer3 plot sacCer3] | ||
|- | |- | ||
| | | 387 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1] | ||
Line 5,065: | Line 5,401: | ||
| style='text-align:right'| 7999 | | style='text-align:right'| 7999 | ||
| style='text-align:right'| 4457057956 | | style='text-align:right'| 4457057956 | ||
| 278, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1&tanDups=pack&position=JH378108:18778847-18779403 JH378108:18778847-18779403] | | 278, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1&tanDups=pack&gap=dense&position=JH378108:18778847-18779403 JH378108:18778847-18779403] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=saiBol1 plot saiBol1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=saiBol1 plot saiBol1] | ||
|- | |- | ||
| | | 388 | ||
| 2017 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=salMan0 salMan0] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 13868435 | |||
| style='text-align:right'| 37 | |||
| style='text-align:right'| 686719420 | |||
| | |||
| style='text-align:right'| 1377 | |||
| style='text-align:right'| 51891830179 | |||
| 517, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=salMan0&tanDups=pack&gap=dense&position=contig132009:61305-62339 contig132009:61305-62339] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=salMan0 plot salMan0] | |||
|- | |||
| 389 | |||
| 2012 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000189315.1/ GCF_000189315.1] | |||
| Phusion2 v. 1.0 | |||
| style='text-align:right'| 351216 | |||
| style='text-align:right'| 36 | |||
| style='text-align:right'| 19186514 | |||
| | |||
| style='text-align:right'| 1000 | |||
| style='text-align:right'| 1396676918 | |||
| 169, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1&tanDups=pack&gap=dense&position=chrX_GL868371_random:2134-2472 chrX_GL868371_random:2134-2472] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sarHar1 plot sarHar1] | |||
|- | |||
| 390 | |||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1 sebNig1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1 sebNig1] | ||
Line 5,079: | Line 5,443: | ||
| style='text-align:right'| 94 | | style='text-align:right'| 94 | ||
| style='text-align:right'| 249080272 | | style='text-align:right'| 249080272 | ||
| 492, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1&tanDups=pack&position=AUPR01114153:357-1341 AUPR01114153:357-1341] | | 492, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebNig1&tanDups=pack&gap=dense&position=AUPR01114153:357-1341 AUPR01114153:357-1341] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebNig1 plot sebNig1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebNig1 plot sebNig1] | ||
|- | |- | ||
| | | 391 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1 sebRub1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1 sebRub1] | ||
Line 5,093: | Line 5,457: | ||
| style='text-align:right'| 139 | | style='text-align:right'| 139 | ||
| style='text-align:right'| 352997550 | | style='text-align:right'| 352997550 | ||
| 408, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1&tanDups=pack&position=KI445670:61530-62346 KI445670:61530-62346] | | 408, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sebRub1&tanDups=pack&gap=dense&position=KI445670:61530-62346 KI445670:61530-62346] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebRub1 plot sebRub1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sebRub1 plot sebRub1] | ||
|- | |- | ||
| | | 392 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=serCan1 serCan1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=serCan1 serCan1] | ||
Line 5,107: | Line 5,471: | ||
| style='text-align:right'| 157 | | style='text-align:right'| 157 | ||
| style='text-align:right'| 357279352 | | style='text-align:right'| 357279352 | ||
| 3222, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=serCan1&tanDups=pack&position=HG009216:7215262-7221706 HG009216:7215262-7221706] | | 3222, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=serCan1&tanDups=pack&gap=dense&position=HG009216:7215262-7221706 HG009216:7215262-7221706] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=serCan1 plot serCan1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=serCan1 plot serCan1] | ||
|- | |- | ||
| | | 393 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1 sorAra1] | ||
Line 5,121: | Line 5,485: | ||
| style='text-align:right'| 1696 | | style='text-align:right'| 1696 | ||
| style='text-align:right'| 783418280 | | style='text-align:right'| 783418280 | ||
| 167, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1&tanDups=pack&position=scaffold_138113:4547-4881 scaffold_138113:4547-4881] | | 167, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra1&tanDups=pack&gap=dense&position=scaffold_138113:4547-4881 scaffold_138113:4547-4881] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sorAra1 plot sorAra1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sorAra1 plot sorAra1] | ||
|- | |- | ||
| | | 394 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2] | ||
Line 5,135: | Line 5,499: | ||
| style='text-align:right'| 5940 | | style='text-align:right'| 5940 | ||
| style='text-align:right'| 2962830748 | | style='text-align:right'| 2962830748 | ||
| 236, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2&tanDups=pack&position=JH798205:592464-592936 JH798205:592464-592936] | | 236, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2&tanDups=pack&gap=dense&position=JH798205:592464-592936 JH798205:592464-592936] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sorAra2 plot sorAra2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=sorAra2 plot sorAra2] | ||
|- | |- | ||
| | | 395 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri1 speTri1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri1 speTri1] | ||
Line 5,149: | Line 5,513: | ||
| style='text-align:right'| 1017 | | style='text-align:right'| 1017 | ||
| style='text-align:right'| 2492700168 | | style='text-align:right'| 2492700168 | ||
| 349, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri1&tanDups=pack&position=scaffold_160520:112228-112926 scaffold_160520:112228-112926] | | 349, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri1&tanDups=pack&gap=dense&position=scaffold_160520:112228-112926 scaffold_160520:112228-112926] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=speTri1 plot speTri1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=speTri1 plot speTri1] | ||
|- | |- | ||
| | | 396 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2] | ||
Line 5,163: | Line 5,527: | ||
| style='text-align:right'| 2662 | | style='text-align:right'| 2662 | ||
| style='text-align:right'| 1156742500 | | style='text-align:right'| 1156742500 | ||
| 204, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2&tanDups=pack&position=JH393366:4794989-4795397 JH393366:4794989-4795397] | | 204, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2&tanDups=pack&gap=dense&position=JH393366:4794989-4795397 JH393366:4794989-4795397] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=speTri2 plot speTri2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=speTri2 plot speTri2] | ||
|- | |- | ||
| | | 397 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1 stePar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1 stePar1] | ||
Line 5,177: | Line 5,541: | ||
| style='text-align:right'| 3673 | | style='text-align:right'| 3673 | ||
| style='text-align:right'| 549500672 | | style='text-align:right'| 549500672 | ||
| 2624, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1&tanDups=pack&position=KK581067:134955-140203 KK581067:134955-140203] | | 2624, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=stePar1&tanDups=pack&gap=dense&position=KK581067:134955-140203 KK581067:134955-140203] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=stePar1 plot stePar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=stePar1 plot stePar1] | ||
|- | |- | ||
| | | 398 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam0 strCam0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam0 strCam0] | ||
Line 5,191: | Line 5,555: | ||
| style='text-align:right'| 666 | | style='text-align:right'| 666 | ||
| style='text-align:right'| 94888209 | | style='text-align:right'| 94888209 | ||
| 1134, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam0&tanDups=pack&position=superscaffold9:6014874-6017142 superscaffold9:6014874-6017142] | | 1134, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam0&tanDups=pack&gap=dense&position=superscaffold9:6014874-6017142 superscaffold9:6014874-6017142] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam0 plot strCam0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam0 plot strCam0] | ||
|- | |- | ||
| | | 399 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1 strCam1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1 strCam1] | ||
Line 5,205: | Line 5,569: | ||
| style='text-align:right'| 646 | | style='text-align:right'| 646 | ||
| style='text-align:right'| 93976596 | | style='text-align:right'| 93976596 | ||
| 1134, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1&tanDups=pack&position=KL206988:717376-719644 KL206988:717376-719644] | | 1134, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strCam1&tanDups=pack&gap=dense&position=KL206988:717376-719644 KL206988:717376-719644] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam1 plot strCam1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strCam1 plot strCam1] | ||
|- | |- | ||
| | | 400 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1 strPur1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1 strPur1] | ||
Line 5,219: | Line 5,583: | ||
| style='text-align:right'| 847.5 | | style='text-align:right'| 847.5 | ||
| style='text-align:right'| 1824767726 | | style='text-align:right'| 1824767726 | ||
| 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1&tanDups=pack&position=Scaffold18311:2619-4531 Scaffold18311:2619-4531] | | 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur1&tanDups=pack&gap=dense&position=Scaffold18311:2619-4531 Scaffold18311:2619-4531] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur1 plot strPur1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur1 plot strPur1] | ||
|- | |- | ||
| | | 401 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2 strPur2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2 strPur2] | ||
Line 5,233: | Line 5,597: | ||
| style='text-align:right'| 1453 | | style='text-align:right'| 1453 | ||
| style='text-align:right'| 2323533345 | | style='text-align:right'| 2323533345 | ||
| 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2&tanDups=pack&position=Scaffold47464:201872-203784 Scaffold47464:201872-203784] | | 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur2&tanDups=pack&gap=dense&position=Scaffold47464:201872-203784 Scaffold47464:201872-203784] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur2 plot strPur2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur2 plot strPur2] | ||
|- | |- | ||
| | | 402 | ||
| 2010 | | 2010 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3 strPur3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3 strPur3] | ||
Line 5,247: | Line 5,611: | ||
| style='text-align:right'| 1763 | | style='text-align:right'| 1763 | ||
| style='text-align:right'| 2733632009 | | style='text-align:right'| 2733632009 | ||
| 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3&tanDups=pack&position=Scaffold85:237230-239142 Scaffold85:237230-239142] | | 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur3&tanDups=pack&gap=dense&position=Scaffold85:237230-239142 Scaffold85:237230-239142] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur3 plot strPur3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur3 plot strPur3] | ||
|- | |- | ||
| | | 403 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4 strPur4] | ||
Line 5,261: | Line 5,625: | ||
| style='text-align:right'| 2360 | | style='text-align:right'| 2360 | ||
| style='text-align:right'| 3918297070 | | style='text-align:right'| 3918297070 | ||
| 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4&tanDups=pack&position=Scaffold382:244159-246071 Scaffold382:244159-246071] | | 956, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strPur4&tanDups=pack&gap=dense&position=Scaffold382:244159-246071 Scaffold382:244159-246071] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur4 plot strPur4] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strPur4 plot strPur4] | ||
|- | |- | ||
| | | 404 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1 strRat1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1 strRat1] | ||
Line 5,275: | Line 5,639: | ||
| style='text-align:right'| 1077 | | style='text-align:right'| 1077 | ||
| style='text-align:right'| 26058414 | | style='text-align:right'| 26058414 | ||
| 113, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1&tanDups=pack&position=RATTI_contig_57682:4110-4336 RATTI_contig_57682:4110-4336] | | 113, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat1&tanDups=pack&gap=dense&position=RATTI_contig_57682:4110-4336 RATTI_contig_57682:4110-4336] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat1 plot strRat1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat1 plot strRat1] | ||
|- | |- | ||
| | | 405 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2 strRat2] | ||
Line 5,289: | Line 5,653: | ||
| style='text-align:right'| 2233 | | style='text-align:right'| 2233 | ||
| style='text-align:right'| 37502032 | | style='text-align:right'| 37502032 | ||
| 67, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2&tanDups=pack&position=chrUn_LN609483v1:243-377 chrUn_LN609483v1:243-377] | | 67, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=strRat2&tanDups=pack&gap=dense&position=chrUn_LN609483v1:243-377 chrUn_LN609483v1:243-377] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat2 plot strRat2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=strRat2 plot strRat2] | ||
|- | |- | ||
| | | 407 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut0 taeGut0] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut0 taeGut0] | ||
Line 5,303: | Line 5,667: | ||
| style='text-align:right'| 3833 | | style='text-align:right'| 3833 | ||
| style='text-align:right'| 2936709220 | | style='text-align:right'| 2936709220 | ||
| 209, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut0&tanDups=pack&position=Contig47:5328655-5329073 Contig47:5328655-5329073] | | 209, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut0&tanDups=pack&gap=dense&position=Contig47:5328655-5329073 Contig47:5328655-5329073] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut0 plot taeGut0] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut0 plot taeGut0] | ||
|- | |- | ||
| | | 408 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1 taeGut1] | ||
Line 5,317: | Line 5,681: | ||
| style='text-align:right'| 3557 | | style='text-align:right'| 3557 | ||
| style='text-align:right'| 2849213000 | | style='text-align:right'| 2849213000 | ||
| 209, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1&tanDups=pack&position=chrZ:28813941-28814359 chrZ:28813941-28814359] | | 209, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut1&tanDups=pack&gap=dense&position=chrZ:28813941-28814359 chrZ:28813941-28814359] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut1 plot taeGut1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut1 plot taeGut1] | ||
|- | |- | ||
| | | 409 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2] | ||
Line 5,331: | Line 5,695: | ||
| style='text-align:right'| 3541 | | style='text-align:right'| 3541 | ||
| style='text-align:right'| 2830875406 | | style='text-align:right'| 2830875406 | ||
| 209, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2&tanDups=pack&position=chrZ:28813941-28814359 chrZ:28813941-28814359] | | 209, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2&tanDups=pack&gap=dense&position=chrZ:28813941-28814359 chrZ:28813941-28814359] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut2 plot taeGut2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=taeGut2 plot taeGut2] | ||
|- | |- | ||
| | | 411 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1] | ||
Line 5,345: | Line 5,709: | ||
| style='text-align:right'| 184 | | style='text-align:right'| 184 | ||
| style='text-align:right'| 251435705 | | style='text-align:right'| 251435705 | ||
| 503, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1&tanDups=pack&position=KE121297:329-1335 KE121297:329-1335] | | 503, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1&tanDups=pack&gap=dense&position=KE121297:329-1335 KE121297:329-1335] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=takFla1 plot takFla1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=takFla1 plot takFla1] | ||
|- | |- | ||
| | | 412 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarIhg38 tarIhg38] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarIhg38 tarIhg38] | ||
Line 5,359: | Line 5,723: | ||
| style='text-align:right'| 7485 | | style='text-align:right'| 7485 | ||
| style='text-align:right'| 11152715153 | | style='text-align:right'| 11152715153 | ||
| 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarIhg38&tanDups=pack&position=chr13:79957499-79957949 chr13:79957499-79957949] | | 225, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarIhg38&tanDups=pack&gap=dense&position=chr13:79957499-79957949 chr13:79957499-79957949] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tarIhg38 plot tarIhg38] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tarIhg38 plot tarIhg38] | ||
|- | |- | ||
| | | 413 | ||
| 2008 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1 tarSyr1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 331855 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 14787267 | |||
| | |||
| style='text-align:right'| 2876 | |||
| style='text-align:right'| 1459380714 | |||
| 448, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr1&tanDups=pack&gap=dense&position=scaffold_66218:7702-8598 scaffold_66218:7702-8598] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tarSyr1 plot tarSyr1] | |||
|- | |||
| 414 | |||
| 2014 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2] | |||
| style='text-align:center;'| [https://www.ncbi.nlm.nih.gov/assembly/GCF_000164805.1/ GCF_000164805.1] | |||
| Celera v. DEC-2012 | |||
| style='text-align:right'| 1116806 | |||
| style='text-align:right'| 34 | |||
| style='text-align:right'| 43244623 | |||
| | |||
| style='text-align:right'| 7232 | |||
| style='text-align:right'| 9159997506 | |||
| 448, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2&tanDups=pack&gap=dense&position=KE938007v1:127466-128362 KE938007v1:127466-128362] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tarSyr2 plot tarSyr2] | |||
|- | |||
| 415 | |||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1 tauEry1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1 tauEry1] | ||
Line 5,373: | Line 5,765: | ||
| style='text-align:right'| 2194 | | style='text-align:right'| 2194 | ||
| style='text-align:right'| 291694166 | | style='text-align:right'| 291694166 | ||
| 227, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1&tanDups=pack&position=JNOY01082112:3268-3722 JNOY01082112:3268-3722] | | 227, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tauEry1&tanDups=pack&gap=dense&position=JNOY01082112:3268-3722 JNOY01082112:3268-3722] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tauEry1 plot tauEry1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tauEry1 plot tauEry1] | ||
|- | |- | ||
| | | 416 | ||
| 2002 | | 2002 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1 tetNig1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1 tetNig1] | ||
Line 5,387: | Line 5,779: | ||
| style='text-align:right'| 3055 | | style='text-align:right'| 3055 | ||
| style='text-align:right'| 661840431 | | style='text-align:right'| 661840431 | ||
| 413, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1&tanDups=pack&position=chrUn_random:43732955-43733781 chrUn_random:43732955-43733781] | | 413, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig1&tanDups=pack&gap=dense&position=chrUn_random:43732955-43733781 chrUn_random:43732955-43733781] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig1 plot tetNig1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig1 plot tetNig1] | ||
|- | |- | ||
| | | 417 | ||
| 2009 | | 2009 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2] | ||
Line 5,401: | Line 5,793: | ||
| style='text-align:right'| 3013 | | style='text-align:right'| 3013 | ||
| style='text-align:right'| 657839855 | | style='text-align:right'| 657839855 | ||
| 413, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2&tanDups=pack&position=chrUn_random:35610230-35611056 chrUn_random:35610230-35611056] | | 413, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2&tanDups=pack&gap=dense&position=chrUn_random:35610230-35611056 chrUn_random:35610230-35611056] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig2 plot tetNig2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tetNig2 plot tetNig2] | ||
|- | |- | ||
| | | 418 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1 tinGut1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1 tinGut1] | ||
Line 5,415: | Line 5,807: | ||
| style='text-align:right'| 279 | | style='text-align:right'| 279 | ||
| style='text-align:right'| 110109614 | | style='text-align:right'| 110109614 | ||
| 416, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1&tanDups=pack&position=KL400833:106660-107492 KL400833:106660-107492] | | 416, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut1&tanDups=pack&gap=dense&position=KL400833:106660-107492 KL400833:106660-107492] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut1 plot tinGut1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut1 plot tinGut1] | ||
|- | |- | ||
| | | 419 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2 tinGut2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2 tinGut2] | ||
Line 5,429: | Line 5,821: | ||
| style='text-align:right'| 279 | | style='text-align:right'| 279 | ||
| style='text-align:right'| 110101482 | | style='text-align:right'| 110101482 | ||
| 416, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2&tanDups=pack&position=KL895505:106660-107492 KL895505:106660-107492] | | 416, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tinGut2&tanDups=pack&gap=dense&position=KL895505:106660-107492 KL895505:106660-107492] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut2 plot tinGut2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tinGut2 plot tinGut2] | ||
|- | |- | ||
| | | 420 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1 triCas1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1 triCas1] | ||
Line 5,443: | Line 5,835: | ||
| style='text-align:right'| 794 | | style='text-align:right'| 794 | ||
| style='text-align:right'| 170185880 | | style='text-align:right'| 170185880 | ||
| 307, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1&tanDups=pack&position=Reptig797:115-729 Reptig797:115-729] | | 307, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas1&tanDups=pack&gap=dense&position=Reptig797:115-729 Reptig797:115-729] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas1 plot triCas1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas1 plot triCas1] | ||
|- | |- | ||
| | | 421 | ||
| 2005 | | 2005 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2 triCas2] | ||
Line 5,457: | Line 5,849: | ||
| style='text-align:right'| 885 | | style='text-align:right'| 885 | ||
| style='text-align:right'| 196279053 | | style='text-align:right'| 196279053 | ||
| 192, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2&tanDups=pack&position=singleUn_1374:29986-30370 singleUn_1374:29986-30370] | | 192, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triCas2&tanDups=pack&gap=dense&position=singleUn_1374:29986-30370 singleUn_1374:29986-30370] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas2 plot triCas2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triCas2 plot triCas2] | ||
|- | |- | ||
| | | 422 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1] | ||
Line 5,471: | Line 5,863: | ||
| style='text-align:right'| 6090 | | style='text-align:right'| 6090 | ||
| style='text-align:right'| 1795040829 | | style='text-align:right'| 1795040829 | ||
| 288, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1&tanDups=pack&position=JH594632:5261920-5262496 JH594632:5261920-5262496] | | 288, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1&tanDups=pack&gap=dense&position=JH594632:5261920-5262496 JH594632:5261920-5262496] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triMan1 plot triMan1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triMan1 plot triMan1] | ||
|- | |- | ||
| | | 423 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1 triSpi1] | ||
Line 5,485: | Line 5,877: | ||
| style='text-align:right'| 4572 | | style='text-align:right'| 4572 | ||
| style='text-align:right'| 74727382 | | style='text-align:right'| 74727382 | ||
| 98, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1&tanDups=pack&position=GL622792v1:5540185-5540381 GL622792v1:5540185-5540381] | | 98, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSpi1&tanDups=pack&gap=dense&position=GL622792v1:5540185-5540381 GL622792v1:5540185-5540381] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSpi1 plot triSpi1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSpi1 plot triSpi1] | ||
|- | |- | ||
| | | 424 | ||
| 2015 | | 2015 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1 triSui1] | ||
Line 5,499: | Line 5,891: | ||
| style='text-align:right'| 2042.5 | | style='text-align:right'| 2042.5 | ||
| style='text-align:right'| 75416120 | | style='text-align:right'| 75416120 | ||
| 501, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1&tanDups=pack&position=KL363185v1:221782-222784 KL363185v1:221782-222784] | | 501, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triSui1&tanDups=pack&gap=dense&position=KL363185v1:221782-222784 KL363185v1:221782-222784] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSui1 plot triSui1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=triSui1 plot triSui1] | ||
|- | |- | ||
| | | 425 | ||
| 2006 | |||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1 tupBel1] | |||
| style='text-align:center;'| tbd | |||
| tbd | |||
| style='text-align:right'| 598738 | |||
| style='text-align:right'| 38 | |||
| style='text-align:right'| 30146267 | |||
| | |||
| style='text-align:right'| 3026 | |||
| style='text-align:right'| 2905815098 | |||
| 357, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupBel1&tanDups=pack&gap=dense&position=scaffold_113598.1-49138:9741-10455 scaffold_113598.1-49138:9741-10455] | |||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tupBel1 plot tupBel1] | |||
|- | |||
| 426 | |||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1] | ||
Line 5,513: | Line 5,919: | ||
| style='text-align:right'| 4569 | | style='text-align:right'| 4569 | ||
| style='text-align:right'| 5345749214 | | style='text-align:right'| 5345749214 | ||
| 3940, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1&tanDups=pack&position=KB320811:857808-865688 KB320811:857808-865688] | | 3940, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1&tanDups=pack&gap=dense&position=KB320811:857808-865688 KB320811:857808-865688] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tupChi1 plot tupChi1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tupChi1 plot tupChi1] | ||
|- | |- | ||
| | | 427 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1 turTru1] | ||
Line 5,527: | Line 5,933: | ||
| style='text-align:right'| 4334 | | style='text-align:right'| 4334 | ||
| style='text-align:right'| 3598266237 | | style='text-align:right'| 3598266237 | ||
| 726, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1&tanDups=pack&position=scaffold_99142:224631-226083 scaffold_99142:224631-226083] | | 726, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru1&tanDups=pack&gap=dense&position=scaffold_99142:224631-226083 scaffold_99142:224631-226083] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=turTru1 plot turTru1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=turTru1 plot turTru1] | ||
|- | |- | ||
| | | 428 | ||
| 2012 | | 2012 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2] | ||
Line 5,541: | Line 5,947: | ||
| style='text-align:right'| 691 | | style='text-align:right'| 691 | ||
| style='text-align:right'| 2466469760 | | style='text-align:right'| 2466469760 | ||
| 652, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2&tanDups=pack&position=JH474081:172050-173354 JH474081:172050-173354] | | 652, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2&tanDups=pack&gap=dense&position=JH474081:172050-173354 JH474081:172050-173354] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=turTru2 plot turTru2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=turTru2 plot turTru2] | ||
|- | |- | ||
| | | 429 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1 tytAlb1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1 tytAlb1] | ||
Line 5,555: | Line 5,961: | ||
| style='text-align:right'| 81 | | style='text-align:right'| 81 | ||
| style='text-align:right'| 23744286 | | style='text-align:right'| 23744286 | ||
| 199, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1&tanDups=pack&position=JJRD01024771:5513-5911 JJRD01024771:5513-5911] | | 199, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tytAlb1&tanDups=pack&gap=dense&position=JJRD01024771:5513-5911 JJRD01024771:5513-5911] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tytAlb1 plot tytAlb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=tytAlb1 plot tytAlb1] | ||
|- | |- | ||
| | | 430 | ||
| 2014 | | 2014 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1 ursMar1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1 ursMar1] | ||
Line 5,569: | Line 5,975: | ||
| style='text-align:right'| 7601 | | style='text-align:right'| 7601 | ||
| style='text-align:right'| 2530787255 | | style='text-align:right'| 2530787255 | ||
| 5007, 6, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1&tanDups=pack&position=KK498603:22100903-22110922 KK498603:22100903-22110922] | | 5007, 6, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ursMar1&tanDups=pack&gap=dense&position=KK498603:22100903-22110922 KK498603:22100903-22110922] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ursMar1 plot ursMar1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=ursMar1 plot ursMar1] | ||
|- | |- | ||
| | | 431 | ||
| 2007 | | 2007 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=venter1 venter1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=venter1 venter1] | ||
Line 5,583: | Line 5,989: | ||
| style='text-align:right'| 7414 | | style='text-align:right'| 7414 | ||
| style='text-align:right'| 7568565462 | | style='text-align:right'| 7568565462 | ||
| 475, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=venter1&tanDups=pack&position=chr14:54149213-54150163 chr14:54149213-54150163] | | 475, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=venter1&tanDups=pack&gap=dense&position=chr14:54149213-54150163 chr14:54149213-54150163] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=venter1 plot venter1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=venter1 plot venter1] | ||
|- | |- | ||
| | | 432 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1 vicPac1] | ||
Line 5,597: | Line 6,003: | ||
| style='text-align:right'| 637 | | style='text-align:right'| 637 | ||
| style='text-align:right'| 730415397 | | style='text-align:right'| 730415397 | ||
| 248, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1&tanDups=pack&position=scaffold_134438:933-1429 scaffold_134438:933-1429] | | 248, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac1&tanDups=pack&gap=dense&position=scaffold_134438:933-1429 scaffold_134438:933-1429] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicPac1 plot vicPac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicPac1 plot vicPac1] | ||
|- | |- | ||
| | | 433 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | ||
Line 5,611: | Line 6,017: | ||
| style='text-align:right'| 873 | | style='text-align:right'| 873 | ||
| style='text-align:right'| 480695662 | | style='text-align:right'| 480695662 | ||
| 170, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2&tanDups=pack&position=KB632444:13257033-13257373 KB632444:13257033-13257373] | | 170, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2&tanDups=pack&gap=dense&position=KB632444:13257033-13257373 KB632444:13257033-13257373] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicPac2 plot vicPac2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicPac2 plot vicPac2] | ||
|- | |- | ||
| | | 434 | ||
| 2008 | | 2008 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicVic1 vicVic1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicVic1 vicVic1] | ||
Line 5,625: | Line 6,031: | ||
| style='text-align:right'| 637 | | style='text-align:right'| 637 | ||
| style='text-align:right'| 731143924 | | style='text-align:right'| 731143924 | ||
| 248, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicVic1&tanDups=pack&position=scaffold_134439:933-1429 scaffold_134439:933-1429] | | 248, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicVic1&tanDups=pack&gap=dense&position=scaffold_134439:933-1429 scaffold_134439:933-1429] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicVic1 plot vicVic1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=vicVic1 plot vicVic1] | ||
|- | |- | ||
| | | 435 | ||
| 2017 | | 2017 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenLae2 xenLae2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenLae2 xenLae2] | ||
Line 5,639: | Line 6,045: | ||
| style='text-align:right'| 793 | | style='text-align:right'| 793 | ||
| style='text-align:right'| 3038879681 | | style='text-align:right'| 3038879681 | ||
| 643, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenLae2&tanDups=pack&position=chr4L:85154781-85156068 chr4L:85154781-85156068] | | 643, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenLae2&tanDups=pack&gap=dense&position=chr4L:85154781-85156068 chr4L:85154781-85156068] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenLae2 plot xenLae2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenLae2 plot xenLae2] | ||
|- | |- | ||
| | | 436 | ||
| 2004 | | 2004 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1 xenTro1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1 xenTro1] | ||
Line 5,653: | Line 6,059: | ||
| style='text-align:right'| 216 | | style='text-align:right'| 216 | ||
| style='text-align:right'| 2854287515 | | style='text-align:right'| 2854287515 | ||
| 347, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1&tanDups=pack&position=scaffold_3418:6326-7020 scaffold_3418:6326-7020] | | 347, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro1&tanDups=pack&gap=dense&position=scaffold_3418:6326-7020 scaffold_3418:6326-7020] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro1 plot xenTro1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro1 plot xenTro1] | ||
|- | |- | ||
| | | 437 | ||
| 2006 | | 2006 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2 xenTro2] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2 xenTro2] | ||
Line 5,667: | Line 6,073: | ||
| style='text-align:right'| 219 | | style='text-align:right'| 219 | ||
| style='text-align:right'| 2820134241 | | style='text-align:right'| 2820134241 | ||
| 548, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2&tanDups=pack&position=scaffold_68:2539823-2540919 scaffold_68:2539823-2540919] | | 548, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro2&tanDups=pack&gap=dense&position=scaffold_68:2539823-2540919 scaffold_68:2539823-2540919] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro2 plot xenTro2] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro2 plot xenTro2] | ||
|- | |- | ||
| | | 438 | ||
| 2011 | | 2011 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3 xenTro3] | ||
Line 5,681: | Line 6,087: | ||
| style='text-align:right'| 219 | | style='text-align:right'| 219 | ||
| style='text-align:right'| 2819484140 | | style='text-align:right'| 2819484140 | ||
| 548, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3&tanDups=pack&position=GL172704:2539823-2540919 GL172704:2539823-2540919] | | 548, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro3&tanDups=pack&gap=dense&position=GL172704:2539823-2540919 GL172704:2539823-2540919] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro3 plot xenTro3] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro3 plot xenTro3] | ||
|- | |- | ||
| | | 439 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | ||
Line 5,695: | Line 6,101: | ||
| style='text-align:right'| 229 | | style='text-align:right'| 229 | ||
| style='text-align:right'| 2808691507 | | style='text-align:right'| 2808691507 | ||
| 3560, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7&tanDups=pack&position=KB021656:75384527-75391648 KB021656:75384527-75391648] | | 3560, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7&tanDups=pack&gap=dense&position=KB021656:75384527-75391648 KB021656:75384527-75391648] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro7 plot xenTro7] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro7 plot xenTro7] | ||
|- | |- | ||
| | | 440 | ||
| 2016 | | 2016 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9 xenTro9] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9 xenTro9] | ||
Line 5,709: | Line 6,115: | ||
| style='text-align:right'| 241 | | style='text-align:right'| 241 | ||
| style='text-align:right'| 2585384269 | | style='text-align:right'| 2585384269 | ||
| 3560, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9&tanDups=pack&position=chr6:35780447-35787568 chr6:35780447-35787568] | | 3560, 2, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro9&tanDups=pack&gap=dense&position=chr6:35780447-35787568 chr6:35780447-35787568] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro9 plot xenTro9] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xenTro9 plot xenTro9] | ||
|- | |- | ||
| | | 441 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1] | ||
Line 5,723: | Line 6,129: | ||
| style='text-align:right'| 506 | | style='text-align:right'| 506 | ||
| style='text-align:right'| 136874274 | | style='text-align:right'| 136874274 | ||
| 119, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1&tanDups=pack&position=JH557910:3615-3853 JH557910:3615-3853] | | 119, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1&tanDups=pack&gap=dense&position=JH557910:3615-3853 JH557910:3615-3853] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xipMac1 plot xipMac1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=xipMac1 plot xipMac1] | ||
|- | |- | ||
| | | 443 | ||
| 2013 | | 2013 | ||
| style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1] | | style='text-align:center;'| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1] | ||
Line 5,737: | Line 6,143: | ||
| style='text-align:right'| 369 | | style='text-align:right'| 369 | ||
| style='text-align:right'| 407868591 | | style='text-align:right'| 407868591 | ||
| 2060, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1&tanDups=pack&position=KB913045:8123897-8128017 KB913045:8123897-8128017] | | 2060, 1, [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1&tanDups=pack&gap=dense&position=KB913045:8123897-8128017 KB913045:8123897-8128017] | ||
| [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=zonAlb1 plot zonAlb1] | | [http://hgwdev-hiram.cse.ucsc.edu/cgi-bin/tandemDups?db=zonAlb1 plot zonAlb1] | ||
|} | |} | ||
== assemblies with zero duplicate gap sequences == | == assemblies with zero duplicate gap sequences == | ||
{| border='1' style='border-collapse:collapse' class='wikitable sortable' | {| border='1' style='border-collapse:collapse' class='wikitable sortable' | ||
Line 5,813: | Line 6,220: | ||
| style='text-align:center;'| tbd | | style='text-align:center;'| tbd | ||
|} | |} | ||
[[Category:Assembly/Track Hubs]] |
Latest revision as of 18:48, 7 February 2018
methods
These are measurements of identical paired sequences with a separation between the pairs of at least one nucleotide. The smallest size sequence in this survey is 30 bases, the largest separation considered was 20,000 bases.
The procedure to find these sequences is as follows:
- generate 29 base kmers for the entire genome, allow only kmers with bases: A C T G, no N's allowed.
- pair up identical kmers with at least one base separation and up to 20,000 bases separation. This separation sequence is referred to here as the gap in this document.
- collapse overlapping kmer pairs when they are the same size of sequence and the same spacing between the pairs. This procedure preserves the definition of duplicated identical pairs.
- the resulting pairs can now be longer sequences with smaller separation then the constituent pairs
- final result selects sizes of 30 bases or more for the size of the paired sequence, and at least one base remaining as a separation gap.
- collapsed pairs that close the gap are discarded. They appear to indicate simple repeat sequences when this happens. It would be interesting to have this result available, but that is not available at this time.
The reason for starting with 29 base sized pairs and then selecting results of at least 30 base sized pairs results in a reasonable number of 30 base pairs. If the procedure starts with 30 base sized pairs, it produces way too many 30 base kmer pairs for a reasonable count.
The measurements are taken from the resulting db.tandemDups.bed[.gz] file in /hive/data/genomes/<db>/bed/tandemDups/db.tandemDups.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is thus calculated from: end - start + 2 * score
This data is also available in the tandemDups table for sequences with genome browser databases. Not all sequences measured here have genome browser databases.
The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated. Multiply this by 2 to see total amount of sequence involved in these repeats for both sides.
The gap total is the sum of the sizes of all the separation gaps between the paired sequences.
table features
The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few have estimated dates, and do not have database genome browsers. The example item is a worst case example, where the ratio of dup sequence size to gap size is the highest, i.e. smallest gap with largest dup size
tandemDups table statistics
count | year | dbName | ncbiAsmId | assembly method | item
count |
item
median |
item
total |
gap
median |
gap
total |
example item
dup size, gap size, link |
scatter plot
dup size vs. gap size | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
001 | 2016 | WSB_EiJ | GCA_001624835.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 368254 | 34 | 19384243 | 3183 | 2181662749 | 1289, 1, chr9:85913016-85915594 | plot GCA_001624835.1_WSB_EiJ_v1 | |
002 | 2016 | A_J | GCA_001624215.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 487934 | 35 | 30403572 | 2466 | 2702508741 | 2797, 1, chr4:1443666-1449260 | plot GCA_001624215.1_A_J_v1 | |
003 | 2016 | CBA_J | GCA_001624475.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 418702 | 34 | 28401436 | 2843 | 2349801727 | 1304, 1, chr8:114635987-114638595 | plot GCA_001624475.1_CBA_J_v1 | |
004 | 2016 | CAROLI_EIJ | GCA_900094665.1 | tbd | 376393 | 34 | 16467240 | 4829 | 2504132478 | 2121, 1, chr9:47637845-47642087 | plot GCA_900094665.1_CAROLI_EIJ_v1 | |
005 | 2016 | LP_J | GCA_001632615.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 405473 | 34 | 23153810 | 2996 | 2347243646 | 1231, 1, chr19:15003741-15006203 | plot GCA_001632615.1_LP_J_v1 | |
006 | 2016 | BALB_cJ | GCA_001632525.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 453227 | 34 | 28546282 | 3208 | 2659711418 | 1726, 1, chr6:125567161-125570613 | plot GCA_001632525.1_BALB_cJ_v1 | |
007 | 2016 | PAHARI_EIJ | GCA_900095145.1 | tbd | 432765 | 33 | 17591114 | 4877 | 2885483004 | 2085, 1, chr7:37074720-37078890 | plot GCA_900095145.1_PAHARI_EIJ_v1 | |
008 | 2016 | PWK_PhJ | GCA_001624775.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 681079 | 39 | 33225754 | 79 | 2397586985 | 3001, 11, chr8:18196572-18202584 | plot GCA_001624775.1_PWK_PhJ_v1 | |
009 | 2016 | DBA_2J | GCA_001624505.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 420635 | 34 | 22366504 | 3216 | 2474195721 | 1603, 1, chr1:13810865-13814071 | plot GCA_001624505.1_DBA_2J_v1 | |
010 | 2016 | NOD_ShiLtJ | GCA_001624675.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 452044 | 35 | 35759787 | 2233 | 2393806733 | 1628, 1, chr10:134464243-134467499 | plot GCA_001624675.1_NOD_ShiLtJ_v1 | |
011 | 2016 | SPRET_EiJ | GCA_001624865.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b | 457522 | 34 | 33139291 | 2707 | 2586459484 | 2050, 1, chr14:83734846-83738946 | plot GCA_001624865.1_SPRET_EiJ_v1 | |
012 | 2016 | NZO_HlLtJ | GCA_001624745.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 440820 | 34 | 30993099 | 2613 | 2478598988 | 1425, 1, chr7:122719474-122722324 | plot GCA_001624745.1_NZO_HlLtJ_v1 | |
013 | 2016 | 129S1_SvImJ | GCA_001624185.1 | SGA v. 0.9.19; Ragout v. 2.0b | 431052 | 34 | 29126986 | 2588 | 2417275715 | 1561, 1, chr3:107700485-107703607 | plot GCA_001624185.1_129S1_SvImJ_v1 | |
014 | 2016 | C57BL_6NJ | GCA_001632555.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 429023 | 34 | 25052791 | 2909 | 2447640962 | 1140, 1, chr7:119230972-119233252 | plot GCA_001632555.1_C57BL_6NJ_v1 | |
015 | 2016 | AKR_J | GCA_001624295.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 469624 | 34 | 33083195 | 2937 | 2697579047 | 1679, 1, chr16:88409132-88412490 | plot GCA_001624295.1_AKR_J_v1 | |
016 | 2016 | CAST_EiJ | GCA_001624445.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail Genomics v. August-2015; Ragout v. 2.0b | 396098 | 34 | 22798803 | 2992 | 2313231531 | 1283, 1, chr8:89538522-89541088 | plot GCA_001624445.1_CAST_EiJ_v1 | |
017 | 2016 | C3H_HeJ | GCA_001632575.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 427662 | 34 | 25752170 | 2957 | 2474866264 | 1490, 1, chr3:96904048-96907028 | plot GCA_001632575.1_C3H_HeJ_v1 | |
018 | 2016 | FVB_NJ | GCA_001624535.1 | SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b | 426149 | 34 | 26653238 | 2773 | 2415686429 | 1819, 1, chr1:75517924-75521562 | plot GCA_001624535.1_FVB_NJ_v1 | |
019 | 2013 | CHM1 | GCF_000306695.2 | SRPRISM v. 2.4.28-alpha; ARGO v. 0.1 | 987820 | 33 | 36885557 | 7363 | 7996145625 | 225, 1, chr13:80499180-80499630 | plot CHM1 | |
020 | 2014 | acaChl1 | GCF_000695815.1 | SOAPdenovo v. 1.6 | 69222 | 38 | 3687159 | 479 | 270396956 | 448, 1, KK830956:17007-17903 | plot acaChl1 | |
021 | 2014 | aciBauTYTH_1 | GCF_000302575.1 | tbd | 175 | 43 | 11650 | 1165 | 777735 | 35, 1, chr_CP003856:2714351-2714421 | plot aciBauTYTH_1 | |
022 | 2006 | afrOth13 | tbd | tbd | 63170 | 39 | 3109998 | 1833 | 319093167 | 126, 1, 3-3:1498405-1498657 | plot afrOth13 | |
023 | 2009 | ailMel1 | GCF_000004335.2 | tbd | 252804 | 36 | 12081062 | 7914 | 2120476903 | 1357, 2, GL194066.1:206322-209037 | plot ailMel1 | |
024 | 2012 | allMis1 | GCF_000281125.1 | Allpaths v. R41313; manual scaffolding | 77832 | 39 | 8850601 | 2629 | 379690780 | 2771, 1, JH736852:249449-254991 | plot allMis1 | |
025 | 2013 | allSin1 | GCF_000455745.1 | SOAPdenovo v. 1.05 | 116160 | 39 | 11500145 | 3510 | 624671088 | 5451, 1, KE696051:101233-112135 | plot allSin1 | |
026 | 2013 | amaVit1 | GCA_000332375.1 | Ray software v. 3 | 37254 | 46 | 10717950 | 256 | 63766115 | 5218, 14, KB272082:90533-100982 | plot amaVit1 | |
027 | 2013 | anaPla1 | GCF_000355885.1 | SOAPdenovo Release v. 1.03 | 27792 | 43 | 2580234 | 401 | 91882502 | 1258, 1, KB745735:2510-5026 | plot anaPla1 | |
028 | 2015 | ancCey1 | GCA_000688135.1 | Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2 | 55040 | 40 | 3358224 | 389.5 | 157542766 | 4183, 1, JARK01001394v1:846761-855127 | plot ancCey1 | |
029 | 2014 | angJap1 | GCA_000470695.1 | CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta | 546983 | 44 | 32365612 | 800 | 580570188 | 1181, 1, KI307522:56201-58563 | plot angJap1 | |
030 | 2007 | anoCar1 | tbd | tbd | 751544 | 38 | 40990303 | 2923 | 4158391303 | 351, 1, scaffold_31:2142294-2142996 | plot anoCar1 | |
031 | 2011 | anoCar2 | GCF_000090745.1 | Arachne v. 3.0.0 | 674365 | 37 | 36071400 | 3201 | 3874056176 | 392, 1, chr4:7395659-7396443 | plot anoCar2 | |
032 | 2004 | anoGam1 | tbd | tbd | 75957 | 43 | 5353295 | 2383 | 356254048 | 1175, 1, chrX:14717656-14720006 | plot anoGam1 | |
033 | 2013 | apaSpi1 | GCA_000385615.1 | SOAPdenovo v. 1.0.5 | 78831 | 41 | 3668114 | 120 | 236011041 | 453, 2, KB928133:814324-815231 | plot apaSpi1 | |
034 | 2014 | apaVit1 | GCF_000703405.1 | SOAPdenovo v. 1.6 | 24291 | 35 | 1216678 | 112 | 56084043 | 453, 1, KL385068:59340-60246 | plot apaVit1 | |
035 | 2004 | apiMel1 | tbd | tbd | 83149 | 38 | 3897116 | 280 | 81345069 | 203, 1, GroupUn.6971:896-1302 | plot apiMel1 | |
036 | 2005 | apiMel2 | tbd | tbd | 91284 | 38 | 4467103 | 295 | 110415978 | 234, 1, Group8:8120781-8121249 | plot apiMel2 | |
037 | 2005 | apiMel3 | tbd | tbd | 100380 | 38 | 5142600 | 318 | 146199642 | 234, 1, Group8:9788059-9788527 | plot apiMel3 | |
038 | 2011 | apiMel4 | GCF_000002195.4 | Atlas assembly system v. before 2011 | 101842 | 38 | 5017659 | 328 | 182902657 | 234, 1, Group8:11123745-11124213 | plot apiMel4 | |
039 | 2009 | aplCal1 | tbd | tbd | 362965 | 33 | 14931570 | 1162 | 1691576982 | 254, 1, scaffold_486:233208-233716 | plot aplCal1 | |
040 | 2014 | aptFor1 | GCF_000699145.1 | SOAPdenovo v. 1.6 | 107781 | 59 | 13547646 | 120 | 162744750 | 2370, 1, KL225745:613720-618460 | plot aptFor1 | |
041 | 2015 | aptMan1 | GCF_001039765.1 | tbd | 282012 | 72 | 84603242 | 159 | 396269019 | 13772, 1, NW_013987314v1:1452350-1479894 | plot aptMan1 | |
042 | 2014 | aquChr1 | GCA_000696035.1 | ABySS v. 1.3.6 | 91231 | 42 | 4160856 | 43 | 70439237 | 98, 1, KK848043:4630547-4630743 | plot aquChr1 | |
043 | 2015 | aquChr2 | GCA_000766835.1 | AllPaths-LG v. August 2013 | 27433 | 39 | 1833575 | 548 | 117223799 | 6351, 4, KN265844v1:264833-277538 | plot aquChr2 | |
044 | 2013 | araMac1 | GCA_000400695.1 | CLC Genomics Workbench v. 4.9 | 20437 | 44 | 1789638 | 1788 | 35728109 | 241, 2, KE047968:4314-4797 | plot araMac1 | |
045 | 2013 | araTha1 | GCF_000001735.3 | tbd | 42547 | 40 | 2336394 | 4141 | 237921318 | 415, 1, chr3:12226092-12226922 | plot araTha1 | |
046 | 2015 | ascSuu1 | GCA_000298755.1 | SOAPdenovo v. 1.04 | 26863 | 62 | 2864530 | 136 | 30068625 | 680, 1, JH878990v1:516922-518282 | plot ascSuu1 | |
047 | 2013 | astMex1 | GCF_000372685.1 | AllPathsLG v. Jan-2013 | 300773 | 36 | 13069886 | 344 | 878056894 | 647, 1, KB872443:19678-20972 | plot astMex1 | |
048 | 2013 | balAcu1 | GCF_000493695.1 | SOAPdenovo v. 16-Mar-2012 | 317691 | 37 | 19886322 | 7511 | 2584004816 | 5160, 1, KI537228:6365-16685 | plot balAcu1 | |
049 | 2014 | balPav1 | GCA_000709895.1 | SOAPdenovo v. 1.6 | 17941 | 37 | 1027192 | 127 | 51713556 | 375, 1, KL478702:45795-46545 | plot balPav1 | |
050 | 2015 | bisBis1 | GCA_000754665.1 | MaSuRCA v. 2.1.0 | 978698 | 37 | 43835440 | 8700.5 | 8769740309 | 338, 1, KN265095v1:5133899-5134575 | plot bisBis1 | |
051 | 2006 | borEut13 | tbd | tbd | 95035 | 35 | 3952633 | 847 | 394283618 | 125, 1, chr4:75059497-75059747 | plot borEut13 | |
052 | 2014 | bosMut1 | GCA_000298355.1 | SOAPdenovo v. 1.14 | 753906 | 35 | 34311202 | 8148 | 6401204703 | 2625, 1, JH881616:2629253-2634503 | plot bosMut1 | |
053 | 2004 | bosTau1 | tbd | tbd | 288698 | 36 | 12358995 | 3236 | 1418202012 | 332, 1, SCAFFOLD225782:8549-9213 | plot bosTau1 | |
054 | 2006 | bosTau3 | tbd | tbd | 1160083 | 37 | 52864419 | 9334 | 11023049142 | 332, 1, chr5:47411355-47412019 | plot bosTau3 | |
055 | 2008 | bosTau4 | tbd | tbd | 1169587 | 37 | 54614790 | 9381 | 11147570812 | 332, 1, chr5:52417493-52418157 | plot bosTau4 | |
056 | 2010 | bosTau5 | tbd | tbd | 1143604 | 37 | 53681590 | 9372 | 10891150076 | 474, 1, chr1:65205480-65206428 | plot bosTau5 | |
057 | 2011 | bosTau6 | GCF_000003055.5 | UMD Overlapper v. 2009; additional processing | 1243148 | 37 | 57730762 | 8928 | 11394478150 | 923, 1, chr22:31476636-31478482 | plot bosTau6 | |
058 | 2012 | bosTau7 | tbd | tbd | 1266397 | 37 | 58263825 | 8876 | 11556236690 | 332, 1, chr5:52215273-52215937 | plot bosTau7 | |
059 | 2014 | bosTau8 | GCF_000003055.5 | UMD Overlapper v. 2009; additional processing | 1243008 | 37 | 57724227 | 8930 | 11394290218 | 923, 1, chr22:31476636-31478482 | plot bosTau8 | |
060 | 2009 | bosTauMd3 | tbd | tbd | 1211279 | 37 | 56451996 | 9197 | 11353955385 | 923, 1, chr22:31476636-31478482 | plot bosTauMd3 | |
061 | 2010 | braFlo2 | tbd | tbd | 335984 | 40 | 21237833 | 1088 | 1244816809 | 1512, 1, Bf_V2_32:3091839-3094863 | plot braFlo2 | |
062 | 2012 | braRap1 | GCF_000309985.1 | SOAPdenovo v. 1.04 | 74411 | 41 | 5348931 | 2750 | 314357742 | 1288, 2, chrA5:13328835-13331412 | plot braRap1 | |
063 | 2008 | bruMal1 | tbd | tbd | 70008 | 37 | 3314327 | 264 | 46555408 | 321, 1, Bmal_supercontigDegenerate10576:240-882 | plot bruMal1 | |
064 | 2015 | bruMal2 | tbd | tbd | 72743 | 38 | 3759073 | 402 | 111607550 | 453, 1, Bmal_v3_scaffold8088:119-1025 | plot bruMal2 | |
065 | 2013 | bubBub1 | GCF_000471725.1 | MaSuRCA v. 1.8.3 | 975518 | 37 | 43577563 | 7913 | 8291159158 | 576, 1, KI419055:2574813-2575965 | plot bubBub1 | |
066 | 2014 | bucRhi1 | GCF_000710305.1 | SOAPdenovo v. 1.6 | 43210 | 56 | 3393282 | 73 | 48672532 | 715, 1, KL533494:44624-46054 | plot bucRhi1 | |
068 | 2015 | burXyl1 | tbd | tbd | 12719 | 36 | 772590 | 1694 | 51888226 | 134, 1, scaffold01254:876286-876554 | plot burXyl1 | |
069 | 2011 | caeAng1 | GCA_000165025.1 | Velvet v. 0.7.56 | 100045 | 42 | 4176946 | 305 | 156635287 | 71, 1, scafRNAPATHr22140:12806-12948 | plot caeAng1 | |
070 | 2015 | caeAng2 | tbd | tbd | 148180 | 41 | 6380576 | 369 | 202631392 | 131, 1, Cang_2012_03_13_00262:54689-54951 | plot caeAng2 | |
071 | 2008 | caeJap1 | tbd | tbd | 54911 | 37 | 2702441 | 669 | 184995823 | 179, 1, chrUn:91344286-91344644 | plot caeJap1 | |
072 | 2009 | caeJap2 | tbd | tbd | 61394 | 38 | 3566172 | 1128.5 | 219090212 | 153, 1, chrUn:143662847-143663153 | plot caeJap2 | |
073 | 2010 | caeJap2a | tbd | tbd | 59499 | 38 | 3480262 | 973 | 192672580 | 153, 1, Cjap_Contig3098:12088-12394 | plot caeJap2a | |
074 | 2010 | caeJap3 | tbd | tbd | 47394 | 36 | 2103165 | 360 | 75708219 | 176, 1, ABLE03028834:844-1196 | plot caeJap3 | |
075 | 2011 | caeJap4 | GCA_000147155.1 | Celera assembler v. 6.0 | 66567 | 37 | 3336966 | 815 | 226847582 | 176, 1, Scaffold17893:329482-329834 | plot caeJap4 | |
076 | 2007 | caePb1 | tbd | tbd | 67100 | 38 | 3590813 | 2009 | 281616954 | 168, 1, chrUn:161968878-161969214 | plot caePb1 | |
077 | 2008 | caePb2 | tbd | tbd | 71710 | 39 | 3958202 | 3788.5 | 420907669 | 239, 1, chrUn:97561553-97562031 | plot caePb2 | |
078 | 2011 | caePb3 | GCA_000143925.2 | PCAP v. 9/3/04 | 71721 | 39 | 3951441 | 3770 | 420080585 | 239, 1, Scfld02_132:346628-347106 | plot caePb3 | |
079 | 2005 | caeRem1 | tbd | tbd | 78288 | 40 | 4264984 | 1786 | 318215569 | 193, 1, SuperCont3184:2552-2938 | plot caeRem1 | |
080 | 2007 | caeRem2 | tbd | tbd | 102926 | 41 | 5484074 | 859 | 350685995 | 193, 1, chrUn:145434398-145434784 | plot caeRem2 | |
081 | 2008 | caeRem3 | tbd | tbd | 69306 | 40 | 3736990 | 2408 | 318941600 | 181, 1, chrUn:147913992-147914354 | plot caeRem3 | |
082 | 2011 | caeRem4 | GCF_000149515.1 | tbd | 70702 | 39 | 3779779 | 2320 | 319257206 | 181, 1, Crem_Contig169:93478-93840 | plot caeRem4 | |
083 | 2011 | caeSp111 | GCA_000186765.1 | Celera assembler v. 6.0 | 16576 | 36 | 783303 | 2230.5 | 70961296 | 161, 1, Scaffold630:3047861-3048183 | plot caeSp111 | |
084 | 2015 | caeSp51 | tbd | tbd | 20559 | 36 | 877191 | 1869 | 57741956 | 109, 1, Csp5_scaffold_04217:6885-7103 | plot caeSp51 | |
085 | 2011 | caeSp91 | tbd | tbd | 67737 | 36 | 3110776 | 1418 | 221671479 | 195, 1, Scaffold7109:118818-119208 | plot caeSp91 | |
086 | 2014 | calAnn1 | GCF_000699085.1 | SOAPdenovo v. 1.6 | 115073 | 39 | 9049123 | 590 | 450885170 | 1104, 1, KL218440:2851016-2853224 | plot calAnn1 | |
087 | 2007 | calJac1 | tbd | tbd | 1406061 | 36 | 81133160 | 2838 | 7224876806 | 342, 1, Contig38531:3004-3688 | plot calJac1 | |
088 | 2010 | calJac3 | GCF_000004665.1 | PCAP v. 2009 | 933429 | 35 | 41296063 | 4319 | 6020954211 | 342, 1, chrUn_GL289980:2548-3232 | plot calJac3 | |
089 | 2013 | calMil1 | GCF_000165045.1 | Celera v. 6.1 | 365912 | 35 | 15637123 | 1428 | 1794921679 | 144, 1, KI635985:586597-586885 | plot calMil1 | |
090 | 2012 | camFer1 | GCF_000311805.1 | SOAPdenovo v. V1.05 | 101845 | 33 | 6622167 | 162 | 292517673 | 934, 1, KB017230:2215149-2217017 | plot camFer1 | |
091 | 2004 | canFam1 | tbd | tbd | 708312 | 35 | 27662849 | 8269 | 6176862199 | 292, 1, chr7:79846479-79847063 | plot canFam1 | |
092 | 2005 | canFam2 | tbd | tbd | 953541 | 35 | 38683290 | 7862 | 8147344317 | 746, 1, chrUn:76334072-76335564 | plot canFam2 | |
093 | 2012 | canFam3 | GCF_000002285.3 | Arachne v. April 2010 | 971687 | 35 | 40018993 | 7312 | 7976595682 | 292, 1, chr7:77369247-77369831 | plot canFam3 | |
094 | 2009 | canFamPoodle1 | GCA_000181415.1 | tbd | 46485 | 34 | 1777637 | 138 | 18530637 | 210, 1, AACN010470517:102-522 | plot canFamPoodle1 | |
095 | 2005 | canHg12 | tbd | tbd | 33765 | 35 | 1344552 | 617 | 139440788 | 121, 1, 12:76878573-76878815 | plot canHg12 | |
096 | 2014 | capCar1 | GCF_000700745.1 | SOAPdenovo v. 1.6 | 63810 | 36 | 3017510 | 389.5 | 221999357 | 1265, 2, KL360999:16916-19447 | plot capCar1 | |
097 | 2013 | capHir1 | GCF_000317765.1 | SOAPdenovo v. 1.03 | 620672 | 36 | 27059872 | 6750 | 4701845701 | 4915, 1, chr24:61180186-61190016 | plot capHir1 | |
098 | 2014 | carCri1 | GCF_000690535.1 | SOAPdenovo v. 1.6 | 20461 | 37 | 1163337 | 68 | 30549622 | 529, 1, KK515247:46620-47678 | plot carCri1 | |
099 | 2006 | cavPor2 | tbd | tbd | 153670 | 41 | 9672753 | 3682 | 600037188 | 260, 1, scaffold_228157:14475-14995 | plot cavPor2 | |
100 | 2008 | cavPor3 | GCF_000151735.1 | unknown v. before 2008 | 423409 | 39 | 22453984 | 5720 | 3122228393 | 260, 1, scaffold_239:788868-789388 | plot cavPor3 | |
101 | 2003 | cb1 | tbd | tbd | 36051 | 37 | 2442691 | 558 | 98718219 | 191, 1, chrUn:90311348-90311730 | plot cb1 | |
102 | 2005 | cb2 | tbd | tbd | 35978 | 37 | 2444306 | 560 | 98588417 | 317, 1, chrIII:126724-127358 | plot cb2 | |
103 | 2007 | cb3 | tbd | tbd | 35990 | 37 | 2451574 | 568.5 | 99618994 | 317, 1, chrIII:11646590-11647224 | plot cb3 | |
104 | 2011 | cb4 | tbd | tbd | 36155 | 37 | 2519414 | 578 | 100960462 | 317, 1, chrIII:76433-77067 | plot cb4 | |
105 | 2011 | ce10 | tbd | tbd | 33806 | 38 | 1760308 | 427 | 82769023 | 1500, 1, chrIV:5554976-5557976 | plot ce10 | |
106 | 2013 | ce11 | GCF_000002985.6 | tbd | 33816 | 38 | 1760641 | 427 | 82800067 | 1500, 1, chrIV:5554985-5557985 | plot ce11 | |
107 | 2004 | ce2 | tbd | tbd | 33799 | 38 | 1759889 | 427 | 82752389 | 1500, 1, chrIV:5554978-5557978 | plot ce2 | |
108 | 2005 | ce3 | tbd | tbd | 33799 | 38 | 1759889 | 427 | 82752398 | 1500, 1, chrIV:5554972-5557972 | plot ce3 | |
109 | 2007 | ce4 | tbd | tbd | 33792 | 38 | 1759610 | 427 | 82743753 | 1500, 1, chrIV:5554972-5557972 | plot ce4 | |
110 | 2007 | ce5 | tbd | tbd | 33794 | 38 | 1759781 | 427 | 82743927 | 1500, 1, chrIV:5554972-5557972 | plot ce5 | |
111 | 2008 | ce6 | tbd | tbd | 33794 | 38 | 1759781 | 427 | 82743927 | 1500, 1, chrIV:5554972-5557972 | plot ce6 | |
112 | 2009 | ce7 | tbd | tbd | 33806 | 38 | 1760308 | 427 | 82769007 | 1500, 1, chrIV:5554972-5557972 | plot ce7 | |
113 | 2009 | ce8 | tbd | tbd | 33806 | 38 | 1760308 | 427 | 82769007 | 1500, 1, chrIV:5554972-5557972 | plot ce8 | |
114 | 2010 | ce9 | tbd | tbd | 33806 | 38 | 1760308 | 427 | 82769007 | 1500, 1, chrIV:5554972-5557972 | plot ce9 | |
115 | 2012 | cerSim1 | GCF_000283155.1 | ALLPATHS v. R41370 | 182565 | 35 | 7975290 | 7694 | 1503937586 | 217, 1, JH767741:19156533-19156967 | plot cerSim1 | |
116 | 2014 | chaVoc1 | GCF_000708025.1 | SOAPdenovo v. 1.6 | 53439 | 41 | 4896801 | 1813 | 256127930 | 1729, 2, KL408233:1252791-1256250 | plot chaVoc1 | |
117 | 2014 | chaVoc2 | GCF_000708025.1 | SOAPdenovo v. 1.6 | 53430 | 41 | 4896157 | 1812 | 256095280 | 1729, 2, KL871243:1252791-1256250 | plot chaVoc2 | |
118 | 2013 | cheMyd1 | GCF_000344595.1 | SOAPdenovo v. 1.05 | 338286 | 38 | 27175756 | 2112 | 1711904320 | 2073, 1, KB534909:887250-891396 | plot cheMyd1 | |
119 | 2012 | chiLan1 | GCA_000276665.1 | ALLPATHS v. R40776 | 162447 | 34 | 8332343 | 5673 | 1154905940 | 274, 1, JH721868:33430685-33431233 | plot chiLan1 | |
120 | 2013 | chlSab1 | tbd | tbd | 933660 | 34 | 44465888 | 4819 | 6164212406 | 1783, 1, chrY:1553648-1557214 | plot chlSab1 | |
121 | 2014 | chlSab2 | GCF_000409795.2 | ALLPATHS and Newbler v. 13-Feb-2013 | 934123 | 34 | 44534038 | 4823 | 6168422847 | 1783, 1, chrY:1553648-1557214 | plot chlSab2 | |
122 | 2014 | chlUnd1 | GCF_000695195.1 | SOAPdenovo v. 1.6 | 28454 | 43 | 1824188 | 165 | 94696650 | 497, 1, KK750077:105999-106993 | plot chlUnd1 | |
123 | 2008 | choHof1 | GCA_000164785.1 | tbd | 209811 | 36 | 9540548 | 431 | 262030496 | 307, 1, scaffold_3919:20103-20717 | plot choHof1 | |
124 | 2012 | chrAsi1 | GCF_000296735.1 | allpaths v. R42316 HAPLOIDIFY=True | 805638 | 33 | 32771937 | 6438 | 6141282666 | 8327, 3, JH823352:5306275-5322931 | plot chrAsi1 | |
125 | 2012 | chrPic1 | tbd | tbd | 281953 | 43 | 16725223 | 1275 | 1210278039 | 255, 1, JH584700:738019-738529 | plot chrPic1 | |
126 | 2014 | chrPic2 | GCA_000241765.2 | Newbler v. 2.6 | 313473 | 43 | 18318992 | 1246 | 1347589030 | 269, 1, chrUn_KK085497v1:1941-2479 | plot chrPic2 | |
127 | 2003 | ci1 | GCA_000183065.1 | tbd | 48663 | 39 | 2653274 | 626 | 122189601 | 486, 1, Scaffold_604:30085-31057 | plot ci1 | |
128 | 2005 | ci2 | tbd | tbd | 119965 | 43 | 8287326 | 1961 | 566064667 | 358, 1, scaffold_83:159982-160698 | plot ci2 | |
129 | 2011 | ci3 | GCF_000224145.1 | tbd | 48178 | 39 | 2574684 | 692 | 149951145 | 486, 1, chrUn_NW_004190340v1:65099-66071 | plot ci3 | |
130 | 2004 | cioSav1 | tbd | tbd | 123843 | 39 | 6363601 | 2503 | 618224769 | 189, 1, ps_297:30448-30826 | plot cioSav1 | |
131 | 2005 | cioSav2 | tbd | tbd | 157468 | 38 | 7731855 | 2875 | 819500559 | 280, 1, reftig_238:125039-125599 | plot cioSav2 | |
132 | 2015 | colAng1 | GCF_000951035.1 | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 | 732293 | 34 | 34516665 | 6816 | 5701906030 | 219, 1, NW_012114455v1:1212718-1213156 | plot colAng1 | |
133 | 2013 | colLiv1 | GCF_000337935.1 | SOAPdenovo v. 2.0 | 139510 | 33 | 6394287 | 112 | 419571584 | 3080, 2, KB375367:1029739-1035900 | plot colLiv1 | |
134 | 2014 | colStr1 | GCF_000690715.1 | SOAPdenovo v. 1.6 | 55406 | 40 | 3066780 | 131 | 154687137 | 309, 1, KK533057:6873-7491 | plot colStr1 | |
135 | 2012 | conCri1 | GCF_000260355.1 | AllPaths v. 2012 | 253120 | 35 | 11854934 | 7807 | 2109955223 | 265, 1, JH655888:40209348-40209878 | plot conCri1 | |
136 | 2014 | corBra1 | GCF_000691975.1 | SOAPdenovo v. 1.6 | 91630 | 37 | 6371852 | 297 | 248570100 | 1583, 1, KK718913:5901493-5904659 | plot corBra1 | |
137 | 2014 | corCor1 | GCF_000738735.1 | AllPaths v. Allpaths-LG version 41687 | 58556 | 36 | 3043376 | 370 | 184023111 | 1935, 1, KL997525:15617964-15621834 | plot corCor1 | |
138 | 2013 | cotJap1 | GCA_000511605.1 | Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2 | 7329 | 33 | 280548 | 75 | 2914174 | 214, 1, DF262918:84572-85000 | plot cotJap1 | |
139 | 2013 | criGri1 | GCF_000419365.1 | SOAPdenovo v. 2.2 | 392434 | 34 | 24519809 | 4676 | 2562035140 | 2419, 1, KE383702:1200830-1205668 | plot criGri1 | |
140 | 2017 | criGriChoV1 | GCF_000223135.1 | SOAPdenovo v. 1.05 | 399488 | 34 | 20807116 | 3409 | 2361128543 | 2346, 1, NW_003614503v1:231537-236229 | plot criGriChoV1 | |
141 | 2014 | cucCan1 | GCF_000709325.1 | SOAPdenovo v. 1.6 | 126008 | 42 | 16101261 | 2142 | 633238955 | 2278, 1, KL448309:4464943-4469499 | plot cucCan1 | |
142 | 2014 | cynSem1 | GCF_000523025.1 | SOAPdenovo v. April-2011 | 83655 | 37 | 6369004 | 261 | 184971677 | 1536, 1, chr1:16715796-16718868 | plot cynSem1 | |
143 | 2014 | cypVar1 | GCA_000732505.1 | AllPaths v. May 2014 | 136313 | 39 | 9823682 | 1299 | 502219020 | 2138, 1, KL652705:564642-568918 | plot cypVar1 | |
144 | 2015 | danRer10 | GCF_000002035.5 | tbd | 830199 | 36 | 39955973 | 1138 | 3506165088 | 829, 1, chr7:19536660-19538318 | plot danRer10 | |
145 | 2006 | danRer4 | tbd | tbd | 967867 | 37 | 3554929771106085888 | 1483 | -5209059568647030784 | 829, 1, chr7:22863126-22864784 | plot danRer4 | |
146 | 2007 | danRer5 | tbd | tbd | 878638 | 36 | 43432292 | 1103 | 3637100049 | 829, 1, chr7:21951036-21952694 | plot danRer5 | |
147 | 2009 | danRer6 | tbd | tbd | 1054071 | 36 | 55306251 | 1381 | 4517471825 | 2083, 1, chr10:31284766-31288932 | plot danRer6 | |
148 | 2010 | danRer7 | GCF_000002035.4 | tbd | 910457 | 36 | 43398798 | 1289 | 3925402743 | 829, 1, chr7:20946224-20947882 | plot danRer7 | |
149 | 2005 | dasNov1 | tbd | tbd | 154605 | 37 | 7624828 | 1001 | 335128473 | 306, 1, scaffold_52384:6155-6767 | plot dasNov1 | |
150 | 2008 | dasNov2 | tbd | tbd | 208970 | 39 | 11666796 | 2156 | 635204397 | 306, 1, scaffold_34025:7890-8502 | plot dasNov2 | |
151 | 2012 | dasNov3 | GCF_000208655.1 | Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill | 482246 | 37 | 24275809 | 3870 | 2851995366 | 1375, 1, JH574868:466920-469670 | plot dasNov3 | |
152 | 2014 | dicLab1 | GCA_000689215.1 | tbd | 204757 | 36 | 11489728 | 924 | 691437386 | 841, 1, HG916851:32290203-32291885 | plot dicLab1 | |
153 | 2008 | dipOrd1 | GCA_000151885.1 | tbd | 1877441 | 35 | 85259926 | 2185 | 7963556509 | 183, 1, scaffold_30074:4167-4533 | plot dipOrd1 | |
154 | 2015 | dirImm1 | tbd | tbd | 3309 | 36 | 316992 | 58 | 1820327 | 1613, 1, nDi_2_2_scaf00284:19002-22228 | plot dirImm1 | |
155 | 2003 | dm1 | tbd | tbd | 12199 | 50 | 1260685 | 3445 | 60460276 | 3882, 2, chr2L:1894810-1902575 | plot dm1 | |
156 | 2004 | dm2 | tbd | tbd | 13213 | 51 | 1372092 | 3723 | 67342596 | 3882, 2, chr2L:1893145-1900910 | plot dm2 | |
157 | 2006 | dm3 | tbd | tbd | 113222 | 40 | 6787673 | 2412 | 622002007 | 3882, 2, chr2L:1893145-1900910 | plot dm3 | |
158 | 2014 | dm6 | GCF_000001215.4 | tbd | 48031 | 48 | 4403254 | 3448 | 254474999 | 3882, 2, chr2L:1893145-1900910 | plot dm6 | |
159 | 2004 | dp2 | tbd | tbd | 16790 | 44 | 1110948 | 926 | 42217528 | 227, 1, Contig7446_Contig2444:1979445-1979899 | plot dp2 | |
160 | 2004 | dp3 | tbd | tbd | 20334 | 44 | 1389766 | 1239 | 62703720 | 312, 1, chrU:9357988-9358612 | plot dp3 | |
161 | 2006 | dp4 | tbd | tbd | 53060 | 46 | 3495255 | 2437 | 228127096 | 312, 1, Unknown_singleton_2460:32411-33035 | plot dp4 | |
162 | 2014 | droAlb1 | GCA_000298335.1 | SOAPdenovo v. 1.04 | 126521 | 30 | 3970849 | 70 | 35343627 | 76, 1, JH853217:889-1041 | plot droAlb1 | |
163 | 2004 | droAna1 | tbd | tbd | 67882 | 40 | 3659056 | 697 | 196198368 | 572, 1, 2446670:645-1789 | plot droAna1 | |
164 | 2005 | droAna2 | tbd | tbd | 248263 | 42 | 14624595 | 918 | 748771139 | 572, 1, scaffold_13499:1095908-1097052 | plot droAna2 | |
165 | 2006 | droAna3 | GCF_000005115.1 | tbd | 246334 | 42 | 14515690 | 927 | 745835855 | 572, 1, scaffold_13499:1092668-1093812 | plot droAna3 | |
166 | 2013 | droBia2 | GCA_000233415.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 46906 | 42 | 2807408 | 2591 | 175612579 | 2241, 3, AFFD02006372:54233-58717 | plot droBia2 | |
167 | 2013 | droBip2 | GCA_000236285.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 | 54693 | 39 | 2946335 | 1371 | 204354268 | 179, 1, KB463958:131929-132287 | plot droBip2 | |
168 | 2013 | droEle2 | GCA_000224195.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 34862 | 41 | 2092385 | 2187 | 135919965 | 270, 1, KB458613:1953986-1954526 | plot droEle2 | |
169 | 2005 | droEre1 | tbd | tbd | 96336 | 44 | 5585722 | 674 | 191777516 | 359, 1, scaffold_1301:371-1089 | plot droEre1 | |
170 | 2006 | droEre2 | GCF_000005135.1 | tbd | 95081 | 44 | 5535640 | 676 | 190524603 | 359, 1, scaffold_1301:371-1089 | plot droEre2 | |
171 | 2013 | droEug2 | GCA_000236325.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 59111 | 40 | 3495099 | 1518 | 181127987 | 141, 1, KB464979:6084-6366 | plot droEug2 | |
172 | 2013 | droFic2 | GCA_000220665.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 21964 | 44 | 1418464 | 2380.5 | 83742114 | 190, 1, AFFG02001364:4041-4421 | plot droFic2 | |
173 | 2005 | droGri1 | tbd | tbd | 458551 | 40 | 21432909 | 509 | 538034457 | 491, 1, scaffold_2211:899-1881 | plot droGri1 | |
174 | 2006 | droGri2 | GCF_000005155.2 | tbd | 302510 | 40 | 14467041 | 522 | 418546843 | 188, 1, scaffold_6592:1167-1543 | plot droGri2 | |
175 | 2013 | droKik2 | GCA_000224215.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 31358 | 41 | 1855833 | 1533.5 | 112074726 | 117, 1, KB459586:778466-778700 | plot droKik2 | |
176 | 2013 | droMir2 | GCA_000269505.2 | Newbler v. 2.6 | 18368 | 45 | 1204033 | 1747 | 75101816 | 140, 1, chr2:3040735-3041015 | plot droMir2 | |
177 | 2004 | droMoj1 | tbd | tbd | 69928 | 38 | 3220037 | 310 | 78711524 | 225, 1, contig_34282:247-697 | plot droMoj1 | |
178 | 2005 | droMoj2 | tbd | tbd | 102140 | 41 | 5658627 | 1086 | 363630258 | 202, 1, scaffold_6540:14391223-14391627 | plot droMoj2 | |
179 | 2006 | droMoj3 | GCF_000005175.2 | tbd | 101230 | 41 | 5606832 | 1114 | 361818537 | 202, 1, scaffold_6540:14384339-14384743 | plot droMoj3 | |
180 | 2005 | droPer1 | GCF_000005195.2 | tbd | 75046 | 45 | 5536401 | 2595 | 325634621 | 580, 2, super_62:246420-247581 | plot droPer1 | |
181 | 2013 | droPse3 | GCF_000001765.3 | PBJelly v. 12.8.2; Atlas genome assembly | 53481 | 45 | 3494617 | 2480 | 231367590 | 312, 1, chrUn_CH674897_1:32411-33035 | plot droPse3 | |
182 | 2013 | droRho2 | GCA_000236305.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 68118 | 41 | 4002283 | 1672 | 235074913 | 205, 1, AFPP02028413:1419-1829 | plot droRho2 | |
183 | 2005 | droSec1 | GCA_000005215.1 | tbd | 127886 | 38 | 6652375 | 465 | 177925676 | 360, 1, super_6483:1086-1806 | plot droSec1 | |
184 | 2005 | droSim1 | tbd | tbd | 47915 | 42 | 2874159 | 1400 | 171101666 | 217, 1, chr3R_random:168062-168496 | plot droSim1 | |
185 | 2016 | droSim2 | GCF_000754195.2 | Velvet v. 1.1.04 | 10385 | 40 | 551061 | 466 | 26120972 | 217, 1, chrUn_NW_015496898v1:4674-5108 | plot droSim2 | |
186 | 2013 | droSuz1 | GCA_000472105.1 | SOAPdenovo v. 2 | 117859 | 46 | 12342639 | 2277 | 517597655 | 4939, 1, KI419149:2637663-2647541 | plot droSuz1 | |
187 | 2013 | droTak2 | GCA_000224235.2 | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 | 48870 | 41 | 2816693 | 2013 | 202395837 | 306, 1, AFFI02002878:4290-4902 | plot droTak2 | |
188 | 2004 | droVir1 | tbd | tbd | 147648 | 35 | 6630839 | 429 | 239695710 | 244, 1, scaffold_0:5707381-5707869 | plot droVir1 | |
189 | 2005 | droVir2 | tbd | tbd | 432783 | 30 | 17539885 | 481 | 757905036 | 244, 1, scaffold_13049:18877549-18878037 | plot droVir2 | |
190 | 2006 | droVir3 | GCF_000005245.1 | tbd | 407188 | 30 | 16757243 | 495 | 747769004 | 244, 1, scaffold_13049:18848863-18849351 | plot droVir3 | |
191 | 2006 | droWil1 | GCF_000005925.1 | tbd | 118355 | 42 | 7234894 | 1695 | 472632964 | 954, 1, scaffold_181130:9135849-9137757 | plot droWil1 | |
192 | 2013 | droWil2 | GCF_000005925.1 | tbd | 118240 | 42 | 7228999 | 1695 | 472142234 | 954, 1, CH964272:9135849-9137757 | plot droWil2 | |
193 | 2004 | droYak1 | tbd | tbd | 81563 | 43 | 6228480 | 3752 | 459910434 | 851, 1, chr3L:24830341-24832043 | plot droYak1 | |
194 | 2005 | droYak2 | tbd | tbd | 93441 | 45 | 6941572 | 3518 | 501527798 | 1122, 2, chrU:731511-733756 | plot droYak2 | |
195 | 2013 | droYak3 | GCF_000005975.2 | tbd | 85136 | 46 | 6497582 | 2641 | 404384429 | 1122, 2, chrUn_CH892674_1:731511-733756 | plot droYak3 | |
198 | 2005 | echTel1 | tbd | tbd | 116281 | 36 | 5131198 | 673 | 256369374 | 229, 1, scaffold_292508:7264-7722 | plot echTel1 | |
199 | 2013 | echTel2 | GCF_000313985.1 | ALLPATHS v. R37599 | 189447 | 35 | 10276263 | 2860 | 1049531975 | 345, 2, JH980443:629844-630535 | plot echTel2 | |
200 | 2014 | egrGar1 | GCF_000687185.1 | SOAPdenovo v. 1.6 | 74371 | 43 | 9954381 | 893 | 271113520 | 2791, 1, KK500861:718810-724392 | plot egrGar1 | |
201 | 2013 | eidHel1 | GCA_000465285.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 33439 | 35 | 1366001 | 126 | 36481318 | 7647, 43, AWHC01288168:1-15337 | plot eidHel1 | |
202 | 2012 | eleEdw1 | GCF_000299155.1 | allpaths v. R42301 HAPLOIDIFY=True | 356320 | 35 | 16209356 | 6988 | 2779337445 | 408, 1, JH947532:444932-445748 | plot eleEdw1 | |
203 | 2012 | eptFus1 | GCF_000308155.1 | ALLPATHS v. R40371 | 222087 | 35 | 13225570 | 2177 | 1173955475 | 211, 1, JH977672:6077044-6077466 | plot eptFus1 | |
204 | 2008 | equCab2 | tbd | tbd | 393206 | 37 | 17857641 | 2842 | 2161091933 | 526, 1, chr14:85222625-85223677 | plot equCab2 | |
205 | 2014 | equPrz1 | GCA_000696695.1 | SOAPdenovo v. 1.05 | 276230 | 49 | 14219094 | 107 | 801082402 | 1923, 1, KK950139:433764-437610 | plot equPrz1 | |
206 | 2007 | eriEur1 | tbd | tbd | 406856 | 36 | 19671809 | 3390 | 2085450281 | 302, 1, scaffold_334489:6021-6625 | plot eriEur1 | |
207 | 2013 | eriEur2 | GCF_000296755.1 | allpaths v. R41008 | 861216 | 34 | 39995023 | 7216 | 6808639747 | 13780, 5, JH835378:10400-37964 | plot eriEur2 | |
208 | 2014 | esoLuc1 | GCA_000721915.1 | AllPaths v. 43500 | 309026 | 36 | 12717997 | 109 | 633934424 | 1803, 1, KL593524:286555-290161 | plot esoLuc1 | |
209 | 2006 | euaGli13 | tbd | tbd | 85054 | 35 | 3561209 | 981 | 360128068 | 95, 1, 4-7:24024058-24024248 | plot euaGli13 | |
210 | 2014 | eurHel1 | GCF_000690775.1 | SOAPdenovo v. 1.6 | 48033 | 41 | 2646849 | 3690 | 271468700 | 462, 1, KK561721:27808-28732 | plot eurHel1 | |
211 | 2006 | eutHer13 | tbd | tbd | 75114 | 37 | 3312319 | 1220 | 345926827 | 125, 1, 5-6:21163986-21164236 | plot eutHer13 | |
212 | 2013 | falChe1 | GCF_000337975.1 | SOAPdenovo v. 1.4 | 33448 | 36 | 3028131 | 144 | 71160661 | 1589, 1, KB397979:787306-790484 | plot falChe1 | |
213 | 2013 | falPer1 | GCF_000337955.1 | SOAPdenovo v. 1.4 | 32904 | 38 | 2747346 | 156 | 69981752 | 1888, 1, KB390863:6987566-6991342 | plot falPer1 | |
214 | 2006 | felCat1 | tbd | tbd | 403441 | 42 | 30873956 | 930 | 1162418824 | 482, 1, scaffold_30190:390-1354 | plot felCat1 | |
215 | 2006 | felCat3 | tbd | tbd | 403441 | 42 | 30873956 | 930 | 1162418824 | 482, 1, scaffold_30190:390-1354 | plot felCat3 | |
216 | 2010 | felCat4 | GCA_000003115.1 | tbd | 405500 | 38 | 28131413 | 3301 | 2364466223 | 5373, 10, chrA1:165589032-165599787 | plot felCat4 | |
217 | 2011 | felCat5 | GCF_000181335.1 | Celera Assembler v. 6.1 | 453806 | 34 | 18818004 | 7873 | 3800500393 | 238, 1, chrB2:9942275-9942751 | plot felCat5 | |
218 | 2014 | felCat8 | GCF_000181335.2 | CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0 | 611459 | 36 | 31537253 | 5064 | 4215814492 | 482, 1, chrUn_AANG03063521v1:145-1109 | plot felCat8 | |
219 | 2003 | fr1 | tbd | tbd | 65564 | 35 | 3413218 | 165 | 124234021 | 304, 1, chrUn:169005183-169005791 | plot fr1 | |
220 | 2007 | fr2 | tbd | tbd | 104956 | 35 | 5519798 | 156 | 261084207 | 151, 1, chrUn:356162839-356163141 | plot fr2 | |
221 | 2011 | fr3 | GCF_000180615.1 | tbd | 105765 | 35 | 5702900 | 157 | 257018230 | 151, 1, HE592488:202-504 | plot fr3 | |
222 | 2014 | fulGla1 | GCF_000690835.1 | SOAPdenovo v. 1.6 | 20338 | 37 | 1197675 | 93 | 36399474 | 576, 1, KK595554:8470-9622 | plot fulGla1 | |
223 | 2011 | gadMor1 | GCA_000231765.1 | tbd | 523023 | 30 | 17042881 | 24 | 573821154 | 131, 1, HE571852:62524-62786 | plot gadMor1 | |
224 | 2004 | galGal2 | tbd | tbd | 157813 | 51 | 15224008 | 3723 | 846924205 | 208, 1, chr2:94743278-94743694 | plot galGal2 | |
225 | 2006 | galGal3 | tbd | tbd | 243371 | 62 | 25066425 | 3004 | 1138149811 | 208, 1, chr2:97262115-97262531 | plot galGal3 | |
226 | 2009 | galGal4 | GCF_000002315.3 | Celera Assembler v. 5.4 | 78961 | 39 | 4732239 | 2968 | 493569103 | 17591, 16, chrZ:21320544-21355741 | plot galGal4 | |
227 | 2016 | galGal5 | GCF_000002315.4 | MHAP/PBcR v. 8.2beta | 985564 | 36 | 47990278 | 1925 | 3490824745 | 17591, 16, chrZ:21461674-21496871 | plot galGal5 | |
228 | 2014 | galVar1 | GCF_000696425.1 | SOAPdenovo2 v. April 2014 | 1097360 | 61 | 95653951 | 510 | 2494777971 | 1998, 1, NW_007726895v1:52419-56415 | plot galVar1 | |
229 | 2006 | gasAcu1 | tbd | tbd | 131262 | 39 | 7836949 | 3635 | 770629287 | 296, 1, chrUn:59780312-59780904 | plot gasAcu1 | |
230 | 2006 | gasAsc0 | GCA_000180675.1 | tbd | 116031 | 39 | 6613325 | 1417 | 518945407 | 316, 1, contig_16726:674-1306 | plot gasAsc0 | |
231 | 2013 | gavGan0 | tbd | tbd | 140159 | 79 | 22649136 | 5005 | 732648585 | 2263, 10, scaffold7460:20241-24776 | plot gavGan0 | |
232 | 2014 | gavSte1 | GCF_000690875.1 | SOAPdenovo v. 1.6 | 24295 | 36 | 1352476 | 75 | 47417993 | 302, 1, KK611813:2739-3343 | plot gavSte1 | |
233 | 2012 | geoFor1 | GCF_000277835.1 | SOAPdenovo v. 2.01 | 113187 | 37 | 6785044 | 204 | 268468600 | 1013, 1, JH739970:2776008-2778034 | plot geoFor1 | |
234 | 2006 | gliRes13 | tbd | tbd | 31976 | 36 | 1385928 | 1661 | 143989628 | 95, 1, 4-7:15697982-15698172 | plot gliRes13 | |
235 | 2008 | gorGor1 | tbd | tbd | 2032669 | 34 | 79855216 | 1003 | 5481108486 | 368, 1, Supercontig_0046707:4946-5682 | plot gorGor1 | |
236 | 2009 | gorGor2 | tbd | tbd | 2199951 | 34 | 102221723 | 1655 | 9056398920 | 6680, 10, chr11_104921458_1199196:710959-724328 | plot gorGor2 | |
237 | 2016 | gorGor5 | tbd | tbd | 3555119 | 33 | 133654191 | 4102 | 21270991545 | 338, 1, CYUI01005848v1:13590-14266 | plot gorGor5 | |
238 | 2010 | haeCon1 | tbd | tbd | 109810 | 42 | 5802860 | 1251.5 | 319005845 | 196, 1, Hcon_Contig0025586:3955-4347 | plot haeCon1 | |
239 | 2015 | haeCon2 | tbd | tbd | 53818 | 43 | 3892613 | 570 | 187299643 | 2147, 1, scaffold_1557:10532-14826 | plot haeCon2 | |
240 | 2014 | halAlb1 | GCF_000691405.1 | SOAPdenovo v. 1.6 | 13685 | 36 | 754065 | 301 | 41720730 | 548, 2, KK653364:30569-31666 | plot halAlb1 | |
241 | 2014 | halLeu1 | GCF_000737465.1 | SOAPdenovo2 v. May 2014 | 16099 | 40 | 1241068 | 4586 | 98353830 | 79, 1, KL869431:1084034-1084192 | plot halLeu1 | |
242 | 2011 | hapBur1 | GCF_000239415.1 | ALLPATHS-LG v. R35951 | 34584 | 37 | 2342045 | 3524.5 | 202958431 | 10390, 20, JH425331:1373378-1394177 | plot hapBur1 | |
243 | 2015 | hetBac1 | GCA_000223415.1 | Celera assembler v. 6.0 | 3302 | 51 | 353946 | 673 | 12041725 | 317, 1, GL996135v1:102345-102979 | plot hetBac1 | |
244 | 2011 | hetGla1 | tbd | tbd | 209320 | 41 | 29824494 | 3329 | 1244942735 | 3930, 1, JH170644:110745-118605 | plot hetGla1 | |
245 | 2012 | hetGla2 | GCF_000247695.1 | AllPaths v. R39605 | 103053 | 34 | 6024624 | 6941 | 791605735 | 158, 1, JH602100:6973404-6973720 | plot hetGla2 | |
246 | 2009 | hg19 | tbd | tbd | 1038910 | 33 | 38972807 | 7299 | 8376915441 | 225, 1, chr13:80531634-80532084 | plot hg19 | |
247 | 2013 | hg38 | GCF_000001405.26 | tbd | 1356745 | 34 | 52620217 | 7485 | 11152418001 | 225, 1, chr13:79957499-79957949 | plot hg38 | |
248 | 2006 | homIni14 | tbd | tbd | 986594 | 33 | 36270527 | 7838 | 8265721353 | 294, 1, chr20:9839450-9840038 | plot homIni14 | |
249 | 2006 | homNea0 | tbd | tbd | 148 | 30 | 4725 | 14.5 | 2669 | 37, 1, 151586_3339_2553:20-94 | plot homNea0 | |
251 | 2012 | jacJac1 | GCF_000280705.1 | ALLPATHS v. R41689 HAPLOIDIFY=True | 430190 | 34 | 18722704 | 6295 | 3230508925 | 276, 1, JH725590:3244288-3244840 | plot jacJac1 | |
252 | 2012 | latCha1 | GCF_000225785.1 | AllPaths v. R36819 | 261629 | 35 | 10353349 | 1038 | 1285603914 | 182, 1, JH128998:42125-42489 | plot latCha1 | |
253 | 2006 | lauRas13 | tbd | tbd | 43311 | 36 | 1891314 | 1493 | 210427636 | 125, 1, 5-6:22761072-22761322 | plot lauRas13 | |
254 | 2014 | lepDis1 | GCF_000691785.1 | SOAPdenovo v. 1.6 | 16795 | 33 | 749994 | 94 | 31438992 | 199, 1, JJRK01010260:4452-4850 | plot lepDis1 | |
255 | 2012 | lepOcu1 | GCF_000242695.1 | AllPaths v. R38293 | 77276 | 37 | 4579890 | 1084 | 350156295 | 488, 2, chrLG5:14840992-14841969 | plot lepOcu1 | |
256 | 2013 | lepWed1 | GCF_000349705.1 | allpaths v. R41856 HAPLOIDIFY=True | 348917 | 34 | 19316918 | 7787 | 2911858141 | 168, 1, KB716722:387801-388137 | plot lepWed1 | |
257 | 2013 | letCam1 | GCA_000466285.1 | Newbler v. 2.7 | 768187 | 35 | 32420899 | 153 | 1525909318 | 207, 1, KE997215:997-1411 | plot letCam1 | |
258 | 2016 | linHum0 | GCF_000217595.1 | CABOG v. 5.3 | 42080 | 41 | 2313367 | 5018 | 259661061 | 101, 1, NW_012160424:64875-65077 | plot linHum0 | |
259 | 2013 | lipVex1 | GCF_000442215.1 | SOAPdenovo v. 2.01 | 514863 | 35 | 27315468 | 8421 | 4503138248 | 6076, 1, KE559913:905157-917309 | plot lipVex1 | |
260 | 2015 | loaLoa1 | GCA_000183805.3 | Newbler v. 2.1-PreRelease-4/28/2009 | 15889 | 37 | 1294459 | 188 | 16478676 | 109, 1, JH717180v1:404-622 | plot loaLoa1 | |
261 | 2005 | loxAfr1 | tbd | tbd | 357658 | 40 | 19137870 | 2747 | 1623517964 | 191, 1, scaffold_68013:5261-5643 | plot loxAfr1 | |
262 | 2008 | loxAfr2 | tbd | tbd | 452605 | 42 | 26444359 | 3136 | 2138902576 | 191, 1, scaffold_2221:111993-112375 | plot loxAfr2 | |
263 | 2009 | loxAfr3 | GCF_000001905.1 | tbd | 417305 | 36 | 18681349 | 7538 | 3438092453 | 223, 1, scaffold_12:19769054-19769500 | plot loxAfr3 | |
264 | 2008 | macEug1 | tbd | tbd | 165545 | 37 | 7960226 | 131 | 298753576 | 227, 1, Scaffold4099:16828-17282 | plot macEug1 | |
265 | 2010 | macEug2 | GCA_000004035.1 | tbd | 232014 | 38 | 11656107 | 242 | 580939886 | 216, 1, GL085287:42394-42826 | plot macEug2 | |
266 | 2013 | macFas5 | GCF_000364345.1 | SOAPdenovo v. 1.0.5, SRPRISM v. 2.4; ARGO v. 0.1 | 1213705 | 34 | 48732124 | 5488 | 8623449917 | 215, 1, chr12:93264384-93264814 | plot macFas5 | |
267 | 2016 | macNem1 | GCF_000956065.1 | AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2; PBJelly2 v. 14.9.9 | 914925 | 34 | 43337844 | 5927 | 6575951123 | 2580, 4, NW_012015577v1:7214313-7219476 | plot macNem1 | |
268 | 2014 | manPen1 | GCA_000738955.1 | SOAPdenovo v. May 2014 | 304420 | 55 | 33766689 | 853 | 887951462 | 4944, 1, KN012191:2418-12306 | plot manPen1 | |
269 | 2014 | manVit1 | GCF_000692015.1 | SOAPdenovo v. 1.6 | 75103 | 35 | 4570292 | 206 | 245456943 | 5268, 1, KK733349:4046063-4056599 | plot manVit1 | |
271 | 2012 | mayZeb1 | GCF_000238955.1 | AllPaths v. R37043 | 48899 | 38 | 3205287 | 4159 | 307830483 | 9605, 105, JH720664:938440-957754 | plot mayZeb1 | |
272 | 2013 | megLyr1 | GCA_000465345.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 25192 | 34 | 1014702 | 112 | 35852812 | 149, 1, KI041466:2479-2777 | plot megLyr1 | |
273 | 2010 | melGal1 | tbd | tbd | 25253 | 45 | 1794885 | 2825 | 133788059 | 169, 1, chr3:54352580-54352918 | plot melGal1 | |
274 | 2015 | melGal5 | GCF_000146605.2 | MaSuRCA v. 1.9.2 | 101903 | 36 | 4643970 | 197 | 188019328 | 173, 1, chrUn_NW_011217171v1:1-347 | plot melGal5 | |
275 | 2010 | melHap1 | GCA_000172435.1 | tbd | 12515 | 41 | 832837 | 375 | 21806223 | 157, 1, MhA1_Contig2844:850-1164 | plot melHap1 | |
276 | 2010 | melInc1 | GCA_000180415.1 | tbd | 19330 | 40 | 1244828 | 558 | 47252172 | 183, 1, Minc_Contig6373:3669-4035 | plot melInc1 | |
277 | 2015 | melInc2 | tbd | tbd | 22743 | 41 | 1594354 | 1067 | 83086394 | 183, 1, MiV1ctg2756:3669-4035 | plot melInc2 | |
278 | 2012 | melUnd1 | GCF_000238935.1 | Celera v. 6.1 | 99875 | 41 | 5463070 | 6271 | 754338919 | 120, 1, JH556605:5210251-5210491 | plot melUnd1 | |
279 | 2014 | merNub1 | GCF_000691845.1 | SOAPdenovo v. 1.6 | 37279 | 43 | 2280064 | 174 | 103616988 | 543, 1, KK705997:21022-22108 | plot merNub1 | |
280 | 2013 | mesAur1 | GCF_000349665.1 | allpaths v. R44683 | 254929 | 34 | 11386675 | 3099 | 1465851012 | 529, 2, KB708261:1360324-1361383 | plot mesAur1 | |
281 | 2014 | mesUni1 | GCF_000695765.1 | SOAPdenovo v. 1.6 | 52863 | 36 | 2585696 | 257 | 120590969 | 271, 1, JJRI01098248:16372-16914 | plot mesUni1 | |
282 | 2008 | micMur0 | tbd | tbd | 336993 | 36 | 18263201 | 3493 | 1863320468 | 302, 1, scaffold_11535:27481-28085 | plot micMur0 | |
283 | 2008 | micMur1 | GCA_000165445.1 | tbd | 318135 | 36 | 16408745 | 3194 | 1669326577 | 302, 1, scaffold_11535:27481-28085 | plot micMur1 | |
284 | 2015 | micMur2 | GCF_000165445.1 | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 | 1102998 | 38 | 61135566 | 7563 | 8957944918 | 3388, 3, KQ058422v1:91440-98218 | plot micMur2 | |
285 | 2017 | micMur3 | GCF_000165445.2 | AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1 | 1168691 | 38 | 66907392 | 7729 | 9630726519 | 185, 1, chr5:43933509-43933879 | plot micMur3 | |
286 | 2012 | micOch1 | GCF_000317375.1 | allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True | 335553 | 35 | 15776999 | 2433 | 1838809952 | 278, 1, chrLG5:33413026-33413582 | plot micOch1 | |
287 | 2004 | mm5 | tbd | tbd | 849312 | 36 | 40470076 | 5464 | 5947046883 | 499, 1, chr11:108081652-108082650 | plot mm5 | |
288 | 2005 | mm6 | tbd | tbd | 869120 | 36 | 40947038 | 5669 | 6168390266 | 499, 1, chr11:108231617-108232615 | plot mm6 | |
289 | 2005 | mm7 | tbd | tbd | 796902 | 35 | 37088826 | 6053 | 5781640680 | 499, 1, chr11:108519568-108520566 | plot mm7 | |
290 | 2006 | mm8 | tbd | tbd | 818602 | 36 | 37812754 | 6175 | 5992918402 | 499, 1, chr11:108226617-108227615 | plot mm8 | |
291 | 2007 | mm9 | tbd | tbd | 841682 | 36 | 38909060 | 6202 | 6169636600 | 499, 1, chr11:108271841-108272839 | plot mm9 | |
292 | 2004 | monDom1 | tbd | tbd | 525840 | 36 | 23188534 | 4462 | 3384507689 | 487, 1, scaffold_14964:3383335-3384309 | plot monDom1 | |
293 | 2005 | monDom2 | tbd | tbd | 657192 | 37 | 33446092 | 4132 | 4182097432 | 685, 1, scaffold_47:13428470-13429840 | plot monDom2 | |
294 | 2013 | musDom2 | GCF_000371365.1 | AllPathsLG v. September 2012 | 575203 | 36 | 27589830 | 1941 | 2513509860 | 2028, 1, KB856326:64184-68240 | plot musDom2 | |
295 | 2013 | musFur1 | GCA_000215625.1 | ALLPATHS-LG v. R36167 | 309552 | 34 | 12256854 | 8370 | 2709245222 | 446, 1, GL896951:5218180-5219072 | plot musFur1 | |
296 | 2013 | myoBra1 | GCF_000412655.1 | SOAP de novo v. 2.04 | 508698 | 38 | 40839066 | 1070 | 2100859228 | 3719, 1, KE163224:7566116-7573554 | plot myoBra1 | |
297 | 2012 | myoDav1 | GCF_000327345.1 | SOAPdenovo v. 1.06 | 303669 | 37 | 20701160 | 2186 | 1562115676 | 595, 1, KB109238:3742816-3744006 | plot myoDav1 | |
298 | 2008 | myoLuc1 | tbd | tbd | 252160 | 38 | 14746446 | 2605 | 1175238045 | 253, 1, scaffold_116983:3336-3842 | plot myoLuc1 | |
299 | 2010 | myoLuc2 | GCF_000147115.1 | Arachne v. Dev. Jan 2010 | 404463 | 36 | 18255536 | 5420 | 2827568613 | 312, 1, GL430179:150290-150914 | plot myoLuc2 | |
300 | 2014 | nanGal1 | GCF_000622305.1 | SOAPdenovo v. 2.04.4 | 592600 | 35 | 27666364 | 3120.5 | 3348487653 | 767, 1, KL200570:476406-477940 | plot nanGal1 | |
301 | 2015 | nanPar1 | GCA_000935625.1 | SOAPdenovo v. 1.06 | 725822 | 37 | 53289164 | 248 | 1815148366 | 7565, 1, KN905954v1:74233-89363 | plot nanPar1 | |
302 | 2014 | nasLar1 | GCA_000772465.1 | phredPhrap v. 1.080812 | 285793 | 33 | 32688451 | 5276 | 1979226063 | 5956, 2, chrX:51509450-51521363 | plot nasLar1 | |
303 | 2015 | necAme1 | GCF_000507365.1 | Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010 | 30870 | 43 | 1735538 | 1580 | 123448969 | 93, 1, KI659398v1:132-318 | plot necAme1 | |
304 | 2008 | nemVec1 | tbd | tbd | 540729 | 40 | 30645450 | 589 | 1501673463 | 353, 1, scaffold_201:423580-424286 | plot nemVec1 | |
305 | 2011 | neoBri1 | GCF_000239395.1 | ALLPATHS-LG v. R36800 | 62939 | 46 | 6697998 | 1655 | 274117853 | 8242, 20, JH422273:8382583-8399086 | plot neoBri1 | |
306 | 2014 | nipNip1 | GCF_000708225.1 | SOAPdenovo v. 1.6 | 32623 | 43 | 3676893 | 251 | 104452416 | 1496, 1, KL409846:432608-435600 | plot nipNip1 | |
307 | 2010 | nomLeu1 | tbd | tbd | 1639556 | 35 | 79542014 | 2770 | 8727221218 | 427, 1, GL397370:1321325-1322179 | plot nomLeu1 | |
308 | 2011 | nomLeu2 | tbd | tbd | 1639556 | 35 | 79542014 | 2770 | 8727221218 | 427, 1, GL397370:1321325-1322179 | plot nomLeu2 | |
309 | 2013 | nomLeu3 | GCA_000146795.3 | tbd | 1641886 | 35 | 79644778 | 2776 | 8748833073 | 427, 1, chr17:28153188-28154042 | plot nomLeu3 | |
310 | 2014 | notCor1 | GCF_000735185.1 | Celera Assembler v. 7.0 | 164483 | 34 | 7109993 | 199 | 393266432 | 407, 1, KL665414:596304-597118 | plot notCor1 | |
311 | 2008 | ochPri0 | tbd | tbd | 1112332 | 39 | 56228146 | 978 | 3230892899 | 340, 1, scaffold_108746:3869-4549 | plot ochPri0 | |
312 | 2008 | ochPri2 | GCA_000164825.1 | tbd | 1097898 | 39 | 53341188 | 967 | 3107510489 | 340, 1, scaffold_108746:3869-4549 | plot ochPri2 | |
313 | 2013 | ochPri3 | GCF_000292845.1 | Allpaths v. R41206 | 269479 | 35 | 14417226 | 6664 | 2042363947 | 5916, 11, JH802070:23930294-23942136 | plot ochPri3 | |
314 | 2012 | octDeg1 | GCF_000260255.1 | allpaths v. R40507 LITTLE_HELPS_BIG=False | 313028 | 34 | 17153597 | 6219 | 2321422433 | 538, 1, JH651588:2148235-2149311 | plot octDeg1 | |
315 | 2013 | odoRosDiv1 | GCA_000321225.1 | AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2 | 386270 | 34 | 17141224 | 7248 | 3092233269 | 336, 1, KB228946:1914846-1915518 | plot odoRosDiv1 | |
316 | 2015 | oncVol1 | GCA_000499405.1 | tbd | 5247 | 39 | 423838 | 2124 | 28089581 | 739, 1, HG738137v1:12037947-12039425 | plot oncVol1 | |
317 | 2014 | opiHoa1 | GCF_000692075.1 | SOAPdenovo v. 1.6 | 75782 | 40 | 6783674 | 4083 | 456471575 | 1119, 1, KK734928:246587-248825 | plot opiHoa1 | |
318 | 2013 | orcOrc1 | GCF_000331955.2 | AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2 | 355274 | 35 | 15657594 | 8151 | 3040130649 | 4550, 14, NW_004438537v1:3574224-3583337 | plot orcOrc1 | |
319 | 2011 | oreNil1 | tbd | tbd | 80799 | 39 | 4892346 | 6067 | 586359236 | 9755, 32, GL831139:3510855-3530396 | plot oreNil1 | |
320 | 2006 | ornAna1 | GCF_000002275.2 | tbd | 843770 | 36 | 52838231 | 2857 | 4750437899 | 279, 1, Contig10711:4568-5126 | plot ornAna1 | |
321 | 2015 | ornAna2 | GCA_000002275.2 | tbd | 843770 | 36 | 52838231 | 2857 | 4750437899 | 279, 1, chrUn_DS187984v1:4568-5126 | plot ornAna2 | |
322 | 2012 | oryAfe1 | GCF_000298275.1 | allpaths v. R40776 LITTLE_HELPS_BIG=False | 723185 | 34 | 29823049 | 7910 | 6135084152 | 201, 1, JH863815:9524393-9524795 | plot oryAfe1 | |
323 | 2005 | oryCun1 | tbd | tbd | 537127 | 36 | 23715000 | 1631 | 1966576432 | 355, 1, scaffold_215240:74823-75533 | plot oryCun1 | |
324 | 2009 | oryCun2 | GCF_000003625.3 | tbd | 1022805 | 35 | 43458140 | 7982 | 8671655620 | 355, 1, chrX:61423000-61423710 | plot oryCun2 | |
325 | 2006 | oryLat1 | tbd | tbd | 191645 | 40 | 12487530 | 1210 | 620191379 | 379, 1, chr9:5041681-5042439 | plot oryLat1 | |
326 | 2008 | oryLat2 | tbd | tbd | 189087 | 40 | 12356700 | 1234 | 592910738 | 379, 1, chr9:5041681-5042439 | plot oryLat2 | |
327 | 2006 | otoGar1 | tbd | tbd | 292341 | 35 | 13393058 | 3169 | 1564679906 | 371, 1, scaffold_95742.1-347136:293478-294220 | plot otoGar1 | |
328 | 2012 | otoGar3 | GCF_000181295.1 | ALLPATHS-LG v. R35710 | 400962 | 34 | 16217113 | 5408 | 2796782144 | 7275, 20, GL873525:45030822-45045391 | plot otoGar3 | |
329 | 2010 | oviAri1 | GCA_000005525.1 | tbd | 14042 | 49 | 1013366 | 214 | 36573585 | 264, 1, chr15:8985870-8986398 | plot oviAri1 | |
330 | 2012 | oviAri3 | GCF_000298735.1 | SOAPdenovo v. 1.03 | 786369 | 35 | 35783861 | 7004 | 6099422199 | 7782, 1, chr21:31441666-31457230 | plot oviAri3 | |
331 | 2013 | panHod1 | GCF_000400835.1 | SOAPdenovo v. 2.1 | 521516 | 35 | 25591307 | 8191 | 4466818919 | 3120, 1, KE108970:1986445-1992685 | plot panHod1 | |
332 | 2012 | panPan1 | GCF_000258655.1 | Celera Assembler v. 5.4.3 | 729531 | 33 | 27020738 | 7453 | 5965856446 | 156, 1, JH650446:7527934-7528246 | plot panPan1 | |
333 | 2015 | panPan2 | tbd | tbd | 729770 | 33 | 27054170 | 7450 | 5967745842 | 167, 1, chr19:49401130-49401464 | plot panPan2 | |
334 | 2015 | panRed1 | GCA_000341325.1 | Velvet v. 1.2.07 | 23300 | 42 | 1084666 | 1396 | 66559726 | 101, 1, KB454925:8492-8694 | plot panRed1 | |
335 | 2013 | panTig1 | GCF_000464555.1 | SOAPdenovo v. 08-Jul-2011 | 289892 | 33 | 13318045 | 7625 | 2368098055 | 1135, 1, KE721593:7259595-7261865 | plot panTig1 | |
336 | 2003 | panTro1 | tbd | tbd | 808650 | 33 | 35210172 | 5887 | 5843608490 | 200, 1, chr2:110339092-110339492 | plot panTro1 | |
337 | 2006 | panTro2 | tbd | tbd | 1419819 | 34 | 76071535 | 4272 | 9139837465 | 200, 1, chr3:111771142-111771542 | plot panTro2 | |
338 | 2011 | panTro3 | tbd | tbd | 1305469 | 34 | 60933587 | 4651 | 8652075091 | 15941, 16, chrX:43654981-43686878 | plot panTro3 | |
339 | 2012 | panTro4 | GCF_000001515.6 | tbd | 1307554 | 34 | 61009117 | 4652 | 8665203604 | 15941, 16, chrX:43654981-43686878 | plot panTro4 | |
340 | 2016 | panTro5 | GCF_000001515.7 | DiscoVar v. 51280; PBJelly v. 14.9.9 | 1978942 | 33 | 77724028 | 3609 | 11734910613 | 4127, 10, chr7_NW_015973370v1_random:285172-293435 | plot panTro5 | |
341 | 2012 | papAnu2 | GCF_000264685.1 | CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 | 1940392 | 35 | 82607067 | 1823 | 9407152119 | 616, 1, chr11:83077338-83078570 | plot papAnu2 | |
342 | 2009 | papHam1 | tbd | tbd | 660912 | 34 | 27747172 | 3309 | 3807206084 | 342, 1, Contig28428:39-723 | plot papHam1 | |
343 | 2014 | pelCri1 | GCF_000687375.1 | SOAPdenovo v. 1.6 | 42891 | 37 | 2053042 | 265 | 127612523 | 574, 1, KK474798:35527-36675 | plot pelCri1 | |
344 | 2012 | pelSin1 | GCF_000230535.1 | SOAPdenovo v. 1.05 | 282804 | 42 | 32017871 | 2114.5 | 1334725849 | 4166, 1, JH210925:2745573-2753905 | plot pelSin1 | |
345 | 2013 | perManBai1 | GCF_000500345.1 | Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0 | 806105 | 37 | 49741488 | 3501 | 4676973953 | 266, 1, KI615341:3157564-3158096 | plot perManBai1 | |
346 | 2008 | petMar1 | tbd | tbd | 855653 | 36 | 38339527 | 201 | 932728649 | 362, 1, Contig99174:237-961 | plot petMar1 | |
347 | 2012 | petMar2 | GCA_000148955.1 | Arachne v. 3.2 | 836219 | 37 | 38092404 | 692 | 2324558773 | 363, 1, GL498477:1987-2713 | plot petMar2 | |
348 | 2014 | phaCar1 | GCF_000708925.1 | SOAPdenovo v. 1.6 | 41541 | 34 | 1992939 | 36 | 26355615 | 779, 1, KL418261:30029-31587 | plot phaCar1 | |
349 | 2014 | phaLep1 | GCF_000687285.1 | SOAPdenovo v. 1.6 | 26611 | 38 | 1718609 | 216 | 85779441 | 1077, 1, KK455387:47187-49341 | plot phaLep1 | |
350 | 2014 | phoRub1 | GCA_000687265.1 | SOAPdenovo v. 1.6 | 17140 | 43 | 1055248 | 135 | 39934970 | 526, 1, KK424259:7588-8640 | plot phoRub1 | |
351 | 2013 | phyCat1 | GCF_000472045.1 | AllPaths-LG v. January 2013 | 261153 | 35 | 10801080 | 8197 | 2241115729 | 5565, 1, KI411098:797892-809022 | plot phyCat1 | |
352 | 2014 | picPub1 | GCF_000699005.1 | SOAPdenovo v. 1.6 | 397798 | 36 | 17968999 | 7796 | 3299119050 | 4915, 3, KL215520:252741-262573 | plot picPub1 | |
353 | 2013 | poeFor1 | GCF_000485575.1 | AllPaths-LG v. July 2013 | 161806 | 52 | 28441594 | 4650 | 990605574 | 1886, 1, KI520679:7484-11256 | plot poeFor1 | |
354 | 2014 | poeRet1 | tbd | tbd | 71291 | 38 | 4816409 | 1511 | 343849361 | 8790, 4, chrLG5:27506035-27523618 | plot poeRet1 | |
355 | 2007 | ponAbe1 | tbd | tbd | 1548515 | 36 | 94658376 | 3928 | 8754202217 | 285, 1, Contig811:16977-17547 | plot ponAbe1 | |
356 | 2007 | ponAbe2 | tbd | tbd | 1795710 | 36 | 115800456 | 4659 | 11283067110 | 769, 1, chr11:46659515-46661053 | plot ponAbe2 | |
357 | 2015 | priExs1 | tbd | tbd | 33878 | 44 | 2639333 | 1128 | 98936342 | 1626, 1, scaffold830:51430-54682 | plot priExs1 | |
358 | 2007 | priPac1 | tbd | tbd | 29257 | 43 | 1929264 | 448 | 80615899 | 500, 1, chrUn:71534792-71535792 | plot priPac1 | |
359 | 2010 | priPac2 | GCA_000180635.1 | tbd | 19318 | 39 | 1050200 | 259 | 25863820 | 500, 1, ABKE01002096:3239-4239 | plot priPac2 | |
360 | 2011 | priPac3 | tbd | tbd | 36759 | 40 | 2176431 | 321 | 82136541 | 500, 1, Ppa_Contig5:941324-942324 | plot priPac3 | |
361 | 2008 | proCap1 | GCA_000152225.1 | Arachne v. before 2009 | 202788 | 38 | 11309171 | 935 | 440411229 | 254, 1, scaffold_6350:37640-38148 | plot proCap1 | |
362 | 2013 | pseHum1 | GCF_000331425.1 | SOAPdenovo v. 1.5 | 140033 | 36 | 7836448 | 130 | 200423267 | 7517, 10, KB221191:4083820-4098863 | plot pseHum1 | |
363 | 2012 | pteAle1 | GCA_000325575.1 | SOAPdenovo v. 1.06 | 114693 | 37 | 9365161 | 223 | 316324647 | 1333, 1, KB031158:55901168-55903834 | plot pteAle1 | |
364 | 2014 | pteGut1 | GCF_000699245.1 | SOAPdenovo v. 1.6 | 41594 | 36 | 2007893 | 100 | 106772284 | 534, 1, JMFR01060883:1891-2959 | plot pteGut1 | |
365 | 2013 | ptePar1 | GCA_000465405.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 21621 | 32 | 935645 | 268 | 31185376 | 1327, 6, AWGZ01430664:1-2660 | plot ptePar1 | |
366 | 2008 | pteVam1 | GCA_000151845.1 | tbd | 266592 | 43 | 16837304 | 1547 | 867093676 | 194, 1, scaffold_275:208852-209240 | plot pteVam1 | |
367 | 2011 | punNye1 | GCF_000239375.1 | ALLPATHS-LG v. R37016 | 36249 | 38 | 2385815 | 3630 | 214952201 | 5131, 20, JH419262:1608400-1618681 | plot punNye1 | |
368 | 2014 | pygAde1 | GCA_000699105.1 | SOAPdenovo v. 1.6 | 38534 | 46 | 4145677 | 2165.5 | 202245057 | 2147, 1, KL225502:93242-97536 | plot pygAde1 | |
369 | 2013 | pytBiv1 | GCF_000186305.1 | Soap deNovo v. March 2012 | 167510 | 47 | 14323626 | 217 | 396468667 | 235, 1, KE953144:259222-259692 | plot pytBiv1 | |
370 | 2012 | repBase0 | tbd | tbd | 54 | 39 | 2426 | 81.5 | 7619 | 70, 1, MER51A:232-372 | plot repBase0 | |
371 | 2012 | repBase1 | tbd | tbd | 73 | 39 | 3249 | 77 | 9691 | 70, 1, MER51A:232-372 | plot repBase1 | |
372 | 2012 | repBase2 | tbd | tbd | 51 | 40 | 2203 | 79 | 6907 | 70, 1, MER51A:232-372 | plot repBase2 | |
374 | 2005 | rheMac1 | tbd | tbd | 674143 | 34 | 28294758 | 3903 | 4022554742 | 166, 1, SCAFFOLD105044:90895-91227 | plot rheMac1 | |
375 | 2011 | rheMac3 | GCA_000230795.1 | SOAPdenovo v. 1.0 | 622607 | 33 | 29001646 | 6165 | 4578985642 | 1652, 2, chr7:163447756-163451061 | plot rheMac3 | |
376 | 2016 | rheMac8 | GCF_000772875.2 | MaSuRCA v. 1.8.3; PBJelly2 v. 14.9.9 | 2975590 | 37 | 130558718 | 652 | 9828434554 | 342, 1, chrUn_NW_014851878v1:101-785 | plot rheMac8 | |
377 | 2016 | rhiBie1 | GCF_001698545.1 | Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12 | 867906 | 34 | 52086102 | 5459 | 6210031772 | 1941, 1, NW_016810765v1:2055509-2059391 | plot rhiBie1 | |
378 | 2013 | rhiFer1 | GCA_000465495.1 | CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 | 30159 | 33 | 1238560 | 174 | 41741562 | 172, 1, AWHA01239258:1699-2043 | plot rhiFer1 | |
379 | 2014 | rhiRox1 | GCF_000769185.1 | SOAPdenovo v. 2013.04 | 1068178 | 34 | 49472774 | 6393 | 8021193204 | 11652, 1, KN294251v1:31824-55128 | plot rhiRox1 | |
380 | 2013 | ricCom1 | GCF_000151685.1 | tbd | 430308 | 35 | 18638247 | 2948 | 2156357980 | 460, 1, EQ974418:17730-18650 | plot ricCom1 | |
381 | 2003 | rn3 | tbd | tbd | 1202899 | 39 | 66661811 | 5386 | 8488809019 | 230, 1, chr1:37917795-37918255 | plot rn3 | |
382 | 2006 | rn4 | tbd | tbd | 1201940 | 39 | 66433547 | 5409 | 8492561356 | 230, 1, chr1:37914850-37915310 | plot rn4 | |
383 | 2016 | rouAeg1 | GCF_001466805.2 | SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0 | 74090 | 36 | 4591683 | 5517 | 522939887 | 410, 2, NW_015493119v1:122550-123371 | plot rouAeg1 | |
384 | 2003 | sacCer1 | tbd | tbd | 666 | 45 | 76615 | 1914.5 | 2711249 | 50, 1, chr7:519107-519207 | plot sacCer1 | |
385 | 2009 | sacCer2 | tbd | tbd | 669 | 45 | 76812 | 1868 | 2711600 | 71, 1, chrX:120898-121040 | plot sacCer2 | |
386 | 2011 | sacCer3 | GCF_000146045.2 | tbd | 669 | 45 | 78716 | 1868 | 2711582 | 1988, 10, chrVIII:212266-216251 | plot sacCer3 | |
387 | 2012 | saiBol1 | GCA_000235385.1 | AllPaths v. R37830 | 526235 | 34 | 21114308 | 7999 | 4457057956 | 278, 1, JH378108:18778847-18779403 | plot saiBol1 | |
388 | 2017 | salMan0 | tbd | tbd | 13868435 | 37 | 686719420 | 1377 | 51891830179 | 517, 1, contig132009:61305-62339 | plot salMan0 | |
389 | 2012 | sarHar1 | GCF_000189315.1 | Phusion2 v. 1.0 | 351216 | 36 | 19186514 | 1000 | 1396676918 | 169, 1, chrX_GL868371_random:2134-2472 | plot sarHar1 | |
390 | 2013 | sebNig1 | GCA_000475235.1 | tbd | 344468 | 43 | 18020844 | 94 | 249080272 | 492, 1, AUPR01114153:357-1341 | plot sebNig1 | |
391 | 2013 | sebRub1 | GCA_000475215.1 | SOAPdenovo v. 1.05 | 299208 | 38 | 14417679 | 139 | 352997550 | 408, 1, KI445670:61530-62346 | plot sebRub1 | |
392 | 2014 | serCan1 | GCF_000534875.1 | tbd | 201507 | 36 | 9350381 | 157 | 357279352 | 3222, 1, HG009216:7215262-7221706 | plot serCan1 | |
393 | 2007 | sorAra1 | tbd | tbd | 182775 | 34 | 8309825 | 1696 | 783418280 | 167, 1, scaffold_138113:4547-4881 | plot sorAra1 | |
394 | 2013 | sorAra2 | GCF_000181275.1 | Allpaths v. R41070 | 410333 | 34 | 17425137 | 5940 | 2962830748 | 236, 1, JH798205:592464-592936 | plot sorAra2 | |
395 | 2008 | speTri1 | tbd | tbd | 944802 | 38 | 42518738 | 1017 | 2492700168 | 349, 1, scaffold_160520:112228-112926 | plot speTri1 | |
396 | 2012 | speTri2 | GCF_000236235.1 | ALLPATHS v. R37591 | 213421 | 34 | 10318652 | 2662 | 1156742500 | 204, 1, JH393366:4794989-4795397 | plot speTri2 | |
397 | 2014 | stePar1 | GCF_000690725.1 | ALLPATHS-LG v. August 2013 | 96483 | 40 | 8151514 | 3673 | 549500672 | 2624, 1, KK581067:134955-140203 | plot stePar1 | |
398 | 2013 | strCam0 | tbd | tbd | 23662 | 45 | 2730974 | 666 | 94888209 | 1134, 1, superscaffold9:6014874-6017142 | plot strCam0 | |
399 | 2014 | strCam1 | GCF_000698965.1 | SOAPdenovo v. 1.6 | 23599 | 45 | 2718563 | 646 | 93976596 | 1134, 1, KL206988:717376-719644 | plot strCam1 | |
400 | 2005 | strPur1 | tbd | tbd | 658932 | 40 | 35574440 | 847.5 | 1824767726 | 956, 1, Scaffold18311:2619-4531 | plot strPur1 | |
401 | 2007 | strPur2 | tbd | tbd | 611722 | 39 | 30968979 | 1453 | 2323533345 | 956, 1, Scaffold47464:201872-203784 | plot strPur2 | |
402 | 2010 | strPur3 | tbd | tbd | 689739 | 40 | 35781206 | 1763 | 2733632009 | 956, 1, Scaffold85:237230-239142 | plot strPur3 | |
403 | 2011 | strPur4 | GCF_000002235.3 | Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement | 888256 | 42 | 54558021 | 2360 | 3918297070 | 956, 1, Scaffold382:244159-246071 | plot strPur4 | |
404 | 2015 | strRat1 | tbd | tbd | 9910 | 40 | 540468 | 1077 | 26058414 | 113, 1, RATTI_contig_57682:4110-4336 | plot strRat1 | |
405 | 2015 | strRat2 | GCA_001040885.1 | tbd | 8546 | 41 | 482721 | 2233 | 37502032 | 67, 1, chrUn_LN609483v1:243-377 | plot strRat2 | |
407 | 2008 | taeGut0 | tbd | tbd | 597003 | 49 | 43955858 | 3833 | 2936709220 | 209, 1, Contig47:5328655-5329073 | plot taeGut0 | |
408 | 2008 | taeGut1 | tbd | tbd | 602657 | 49 | 44658308 | 3557 | 2849213000 | 209, 1, chrZ:28813941-28814359 | plot taeGut1 | |
409 | 2013 | taeGut2 | GCF_000151805.1 | PCAP v. 2008 | 602028 | 49 | 44591081 | 3541 | 2830875406 | 209, 1, chrZ:28813941-28814359 | plot taeGut2 | |
411 | 2013 | takFla1 | GCA_000400755.1 | HAPs v. 0.2.2 | 97724 | 36 | 6776388 | 184 | 251435705 | 503, 1, KE121297:329-1335 | plot takFla1 | |
412 | 2014 | tarIhg38 | tbd | tbd | 1356771 | 34 | 52620956 | 7485 | 11152715153 | 225, 1, chr13:79957499-79957949 | plot tarIhg38 | |
413 | 2008 | tarSyr1 | tbd | tbd | 331855 | 34 | 14787267 | 2876 | 1459380714 | 448, 1, scaffold_66218:7702-8598 | plot tarSyr1 | |
414 | 2014 | tarSyr2 | GCF_000164805.1 | Celera v. DEC-2012 | 1116806 | 34 | 43244623 | 7232 | 9159997506 | 448, 1, KE938007v1:127466-128362 | plot tarSyr2 | |
415 | 2014 | tauEry1 | GCF_000709365.1 | SOAPdenovo v. 1.6 | 58294 | 35 | 2621924 | 2194 | 291694166 | 227, 1, JNOY01082112:3268-3722 | plot tauEry1 | |
416 | 2002 | tetNig1 | tbd | tbd | 132260 | 38 | 9178877 | 3055 | 661840431 | 413, 1, chrUn_random:43732955-43733781 | plot tetNig1 | |
417 | 2009 | tetNig2 | tbd | tbd | 130250 | 38 | 9072570 | 3013 | 657839855 | 413, 1, chrUn_random:35610230-35611056 | plot tetNig2 | |
418 | 2014 | tinGut1 | GCF_000705375.1 | SOAPdenovo v. 1.6 | 43221 | 38 | 2742653 | 279 | 110109614 | 416, 1, KL400833:106660-107492 | plot tinGut1 | |
419 | 2014 | tinGut2 | GCF_000705375.1 | SOAPdenovo v. 1.6 | 43210 | 38 | 2741340 | 279 | 110101482 | 416, 1, KL895505:106660-107492 | plot tinGut2 | |
420 | 2005 | triCas1 | tbd | tbd | 78796 | 41 | 4117576 | 794 | 170185880 | 307, 1, Reptig797:115-729 | plot triCas1 | |
421 | 2005 | triCas2 | tbd | tbd | 77889 | 41 | 4122780 | 885 | 196279053 | 192, 1, singleUn_1374:29986-30370 | plot triCas2 | |
422 | 2012 | triMan1 | GCF_000243295.1 | AllPaths v. R38542 | 244060 | 35 | 10697421 | 6090 | 1795040829 | 288, 1, JH594632:5261920-5262496 | plot triMan1 | |
423 | 2015 | triSpi1 | GCF_000181795.1 | PCAP v. January 12, 2007 | 11343 | 54 | 1176023 | 4572 | 74727382 | 98, 1, GL622792v1:5540185-5540381 | plot triSpi1 | |
424 | 2015 | triSui1 | GCA_000701005.1 | SOAPdenovo v. 2 | 17372 | 45 | 1593967 | 2042.5 | 75416120 | 501, 1, KL363185v1:221782-222784 | plot triSui1 | |
425 | 2006 | tupBel1 | tbd | tbd | 598738 | 38 | 30146267 | 3026 | 2905815098 | 357, 1, scaffold_113598.1-49138:9741-10455 | plot tupBel1 | |
426 | 2013 | tupChi1 | GCF_000334495.1 | SOAPdenovo v. 1.05 | 803568 | 36 | 91543570 | 4569 | 5345749214 | 3940, 1, KB320811:857808-865688 | plot tupChi1 | |
427 | 2008 | turTru1 | tbd | tbd | 563956 | 39 | 29728359 | 4334 | 3598266237 | 726, 1, scaffold_99142:224631-226083 | plot turTru1 | |
428 | 2012 | turTru2 | GCF_000151865.2 | Atlas, Atlas-Link, Atlas-GapFill v. June 2011 | 776833 | 45 | 45568301 | 691 | 2466469760 | 652, 1, JH474081:172050-173354 | plot turTru2 | |
429 | 2014 | tytAlb1 | GCF_000687205.1 | SOAPdenovo v. 1.6 | 15140 | 33 | 776246 | 81 | 23744286 | 199, 1, JJRD01024771:5513-5911 | plot tytAlb1 | |
430 | 2014 | ursMar1 | GCF_000687225.1 | SOAPdenovo v. 1.05 | 311409 | 35 | 14157428 | 7601 | 2530787255 | 5007, 6, KK498603:22100903-22110922 | plot ursMar1 | |
431 | 2007 | venter1 | tbd | tbd | 930808 | 33 | 34824482 | 7414 | 7568565462 | 475, 1, chr14:54149213-54150163 | plot venter1 | |
432 | 2008 | vicPac1 | tbd | tbd | 625540 | 40 | 38229197 | 637 | 730415397 | 248, 1, scaffold_134438:933-1429 | plot vicPac1 | |
433 | 2013 | vicPac2 | GCF_000164845.1 | Newbler v. May-2012 | 171221 | 45 | 11863115 | 873 | 480695662 | 170, 1, KB632444:13257033-13257373 | plot vicPac2 | |
434 | 2008 | vicVic1 | tbd | tbd | 625651 | 40 | 38233620 | 637 | 731143924 | 248, 1, scaffold_134439:933-1429 | plot vicVic1 | |
435 | 2017 | xenLae2 | GCF_001663975.1 | Meraculous v. May-2013 | 691039 | 37 | 29820985 | 793 | 3038879681 | 643, 2, chr4L:85154781-85156068 | plot xenLae2 | |
436 | 2004 | xenTro1 | tbd | tbd | 1073717 | 40 | 65548900 | 216 | 2854287515 | 347, 1, scaffold_3418:6326-7020 | plot xenTro1 | |
437 | 2006 | xenTro2 | tbd | tbd | 1034566 | 40 | 64677537 | 219 | 2820134241 | 548, 1, scaffold_68:2539823-2540919 | plot xenTro2 | |
438 | 2011 | xenTro3 | tbd | tbd | 1034357 | 40 | 64662644 | 219 | 2819484140 | 548, 1, GL172704:2539823-2540919 | plot xenTro3 | |
439 | 2013 | xenTro7 | GCF_000004195.2 | ARACHNE v. 20071016_modified | 1100470 | 39 | 53428011 | 229 | 2808691507 | 3560, 2, KB021656:75384527-75391648 | plot xenTro7 | |
440 | 2016 | xenTro9 | GCF_000004195.3 | Meraculous v. May-2013 | 967829 | 39 | 47452193 | 241 | 2585384269 | 3560, 2, chr6:35780447-35787568 | plot xenTro9 | |
441 | 2013 | xipMac1 | GCF_000241075.1 | PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010 | 39708 | 35 | 1764516 | 506 | 136874274 | 119, 1, JH557910:3615-3853 | plot xipMac1 | |
443 | 2013 | zonAlb1 | GCF_000385455.1 | Allpaths-LG v. Feb-2013 | 220251 | 35 | 9228906 | 369 | 407868591 | 2060, 1, KB913045:8123897-8128017 | plot zonAlb1 |
assemblies with zero duplicate gap sequences
count | year | dbName | ncbiAsmId | assembly size | assembly method |
---|---|---|---|---|---|
001 | 2014 | bunEbo1 | GCF_000889155.1 | 18940 | tbd |
002 | 2014 | eboVir1 | tbd | 870153 | tbd |
003 | 2014 | eboVir3 | tbd | 18957 | tbd |
004 | 2002 | hpv1 | GCF_000862685.1 | 8033 | tbd |
005 | 2014 | marVir1 | tbd | 38225 | tbd |
006 | 2014 | resEbo1 | GCF_000854085.1 | 18891 | tbd |
007 | 2014 | sudEbo1 | GCF_000855585.1 | 18875 | tbd |
008 | 2014 | taiEbo1 | GCF_000888475.1 | 18935 | tbd |
009 | 2014 | zaiEbo1 | GCF_000848505.1 | 18959 | tbd |