Upload onto CIRM-01: Difference between revisions
From genomewiki
Jump to navigationJump to search
| Line 9: | Line 9: | ||
Example command line tool "lftp": | Example command line tool "lftp": | ||
$ lftp sftp:// | $ lftp sftp://myUsername@cirmdcm.soe.ucsc.edu:6789 | ||
> mirror -R --parallel=10 | > mirror -R --parallel=10 | ||
Revision as of 17:42, 20 March 2018
For CIRM groups
- Ask your UCSC wrangler contact person to set you up with a username and password for the cirmdcm.soe.ucsc.edu sftp upload
- Use an sftp command line client like lftp or simply sftp and connect to sftp://cirmdcm.soe.ucsc.edu, port 6789, using this username
- see below for an example
- If you're unsure which program to use, a good choice is CyberDuck on MacOS, see image below on how to connect using CyberDuck
- Once you're done with the upload, let your wrangler know
Example command line tool "lftp":
$ lftp sftp://myUsername@cirmdcm.soe.ucsc.edu:6789 > mirror -R --parallel=10
-R stands for "reverse", a reverse mirror is lftp-speak for "upload".
For UCSC Wranglers
On cirm01, create the user:
sudo /data/create-user username
To change password of user:
sudo /data/change-password username
The new user is created with their homedir as:
/data/sftp/user/incoming
You have read access to those directories.
