Mm39 35-way conservation alignment: Difference between revisions
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<TD>2020-10-20</TD><TD ALIGN=RIGHT>70.901%</TD> | <TD>2020-10-20</TD><TD ALIGN=RIGHT>70.901%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[https://www.ncbi.nlm.nih.gov/assembly/GCF_003668045.3/ 03]</TH><TH>GCF_003668045.3</TH><TD>[https://www.ncbi.nlm.nih.gov/bioproject/PRJNA389969/ Cricetulus griseus]</TD><TD>Chinese hamster</TD> | <TH>[https://www.ncbi.nlm.nih.gov/assembly/GCF_003668045.3/ 03]</TH><TH>[http://genome.ucsc.edu/h/GCF_003668045.3 GCF_003668045.3]</TH><TD>[https://www.ncbi.nlm.nih.gov/bioproject/PRJNA389969/ Cricetulus griseus]</TD><TD>Chinese hamster</TD> | ||
<TD>2020-06-11 (GCF_003668045.3 CriGri-PICRH-1.0)</TD> | <TD>2020-06-11 (GCF_003668045.3 CriGri-PICRH-1.0)</TD> | ||
<TD>CHO Genome Community/GCF_003668045.3</TD> | <TD>CHO Genome Community/GCF_003668045.3</TD> | ||
Latest revision as of 01:57, 5 January 2021
see also
- Mouse 35-way Mm39 35-way Genome size statistics
- Mouse 35-way Mm39 35-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on mm39 |
% of mm39 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | mm39 | Mus musculus | Mouse | Jun. 2020 (GRCm39/mm39) | Genome Reference Consortium Mouse Build 39 (GCA_000001635.9) | 2020-07-30 | 2020-07-28 | N/A | N/A |
| 02 | rn6 | Rattus norvegicus | Rat | Jul. 2014 (RGSC 6.0/rn6) | RGSC Rnor_6.0 (GCA_000001895.4) | 2014-07-08 | 2014-07-09 | 2020-10-20 | 70.901% |
| 03 | GCF_003668045.3 | Cricetulus griseus | Chinese hamster | 2020-06-11 (GCF_003668045.3 CriGri-PICRH-1.0) | CHO Genome Community/GCF_003668045.3 | 2020-11-25 | 2020-11-26 | 2020-12-08 | 58.000% |
| 04 | casCan1 | Castor canadensis | Beaver | Feb. 2017 (C.can genome v1.0/casCan1) | Hospital for Sick Children | 2018-03-17 | 2018-03-17 | 2020-11-24 | 36.600% |
| 05 | speTri2 | Spermophilus tridecemlineatus | Squirrel | Nov. 2011 (Broad/speTri2) | Broad Institute (GCA_000236235.1) | 2012-03-14 | 2012-03-15 | 2020-11-25 | 34.147% |
| 06 | manPen1 | Manis pentadactyla | Chinese pangolin | Aug 2014 (M_pentadactyla-1.1.1/manPen1) | Washington University (WashU) GCA_000738955.1 | 2014-08-15 | 2014-08-17 | 2020-11-24 | 27.322% |
| 07 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2020-11-25 | 28.378% |
| 08 | galVar1 | Galeopterus variegatus | Malayan flying lemur | Jun. 2014 (G_variegatus-3.0.2/galVar1) | Washington University (WashU) | 2016-03-02 | 2016-03-04 | 2020-11-24 | 35.714% |
| 09 | calJac4 | Callithrix jacchus | Marmoset | May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4) | McDonnell Genome Institute at Washington University | 2020-09-02 | 2020-09-02 | 2020-09-04 | 33.090% |
| 10 | gorGor6 | Gorilla gorilla gorilla | Gorilla | Aug. 2019 (Kamilah_GGO_v0/gorGor6) | University of Washington | 2019-11-19 | 2019-11-19 | 2020-11-24 | 35.064% |
| 11 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15) | 2014-01-10 | 2013-12-25 | 2020-08-18 | 35.372% |
| 12 | panPan3 | Pan paniscus | Bonobo | May 2020 (Mhudiblu_PPA_v0/panPan3) | University of Washington | 2020-06-12 | 2020-06-12 | 2020-11-24 | 35.282% |
| 13 | panTro6 | Pan troglodytes | Chimp | Jan. 2018 (Clint_PTRv2/panTro6) | University of Washington | 2018-03-24 | 2018-03-24 | 2020-11-24 | 35.291% |
| 14 | tarSyr2 | Tarsius syrichta | Tarsier | Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) | Washington University | 2014-11-21 | 2014-11-22 | 2020-11-23 | 32.278% |
| 15 | rheMac10 | Macaca mulatta | Rhesus | Feb. 2019 (Mmul_10/rheMac10) | The Genome Institute at Washington University School of Medicine | 2019-07-01 | 2019-07-01 | 2020-10-20 | 34.838% |
| 16 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2020-11-24 | 29.729% |
| 17 | equCab3 | Equus caballus | Horse | Jan. 2018 (EquCab3.0/equCab3) | University of Louisville | 2018-05-24 | 2018-05-23 | 2020-11-24 | 34.831% |
| 18 | turTru2 | Tursiops truncatus | Dolphin | Oct. 2011 (Baylor Ttru_1.4/turTru2) | Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) | 2012-04-14 | 2012-04-14 | 2020-11-24 | 30.188% |
| 19 | canFam4 | Canis lupus familiaris | Dog | Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) | Uppsala University | 2020-03-31 | 2020-03-31 | 2020-11-24 | 29.376% |
| 20 | tupBel1 | Tupaia belangeri | Tree shrew | Dec. 2006 (Broad/tupBel1) | Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) | 2009-09-02 | 2012-05-03 | 2020-11-25 | 19.691% |
| 21 | susScr3 | Sus scrofa | Pig | Aug. 2011 (SGSC Sscrofa10.2/susScr3) | SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) | 2012-04-12 | 2012-04-13 | 2020-11-24 | 25.611% |
| 22 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 (Broad/loxAfr3) | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-09-02 | 2013-06-21 | 2020-11-24 | 25.756% |
| 23 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | 2013-06-21 | 2020-11-24 | 25.182% |
| 24 | oviAri4 | Ovis aries | Sheep | Nov. 2015 (Oar_v4.0/oviAri4) | International Sheep Genome Consortium | 2018-04-18 | 2018-04-23 | 2020-11-24 | 26.200% |
| 25 | neoSch1 | Neomonachus schauinslandi | Hawaiian monk seal | Jun. 2017 (ASM220157v1/neoSch1) | Johns Hopkins University | 2017-09-22 | 2017-09-22 | 2020-11-24 | 31.257% |
| 26 | bosTau9 | Bos taurus | Cow | Apr. 2018 (ARS-UCD1.2/bosTau9) | USDA ARS | 2018-11-07 | 2018-11-07 | 2020-11-23 | 26.588% |
| 27 | ochPri3 | Ochotona princeps | Pika | May 2012 (OchPri3.0/ochPri3) | Broad Institute | 2013-06-20 | 2013-06-18 | 2020-11-25 | 18.559% |
| 28 | eriEur2 | Erinaceus europaeus | Hedgehog | May 2012 (EriEur2.0/eriEur2) | Broad Institute EriEur2.0 | 2013-06-12 | 2013-06-07 | 2020-11-24 | 13.450% |
| 29 | echTel2 | Echinops telfairi | Tenrec | Nov. 2012 (Broad/echTel2) | Broad/EchTel2.0 | 2013-05-30 | 2013-05-30 | 2020-11-25 | 14.456% |
| 30 | sorAra2 | Sorex araneus | Shrew | Aug. 2008 (Broad/sorAra2) | Broad Institute SorAra2.0 | 2013-05-29 | 2013-05-29 | 2020-11-25 | 13.370% |
| 31 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2020-11-25 | 5.382% |
| 32 | xenTro9 | Xenopus tropicalis | X. tropicalis | Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) | DOE Joint Genome Institute | 2017-03-27 | 2017-03-27 | 2020-11-25 | 1.936% |
| 33 | galGal6 | Gallus gallus | Chicken | Mar. 2018 (GRCg6a/galGal6) | Genome Reference Consortium | 2018-10-11 | 2018-10-11 | 2020-11-25 | 2.537% |
| 34 | petMar3 | Petromyzon marinus | Lamprey | Dec. 2017 (Pmar_germline 1.0/petMar3) | University of Kentucky | 2018-01-12 | 2018-01-12 | 2020-11-24 | 0.905% |
| 35 | danRer11 | Danio rerio | Zebrafish | May 2017 (GRCz11/danRer11) | Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4) | 2017-06-06 | 2017-06-02 | 2020-11-25 | 1.416% |
