User:Kate: Difference between revisions
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I've been a | I've been a genome browser software developer at UCSC since April 2003. | ||
Before that, I worked in the software industry for several decades, | Before that, I worked in the software industry for several decades, | ||
working primarily in scientific and | working primarily in scientific and technical applications areas. | ||
It's great to be able to apply my Unix/C/programming expertise to | It's great to be able to apply my Unix/C/programming expertise to | ||
my favorite application area -- Human Biology (which was actually my major | my favorite application area -- Human Biology (which was actually my major | ||
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== Current Projects == | == Current Projects == | ||
* Multiple alignment of 28 vertebrate species | |||
* [http://genome.ucsc.edu/ENCODE ENCODE at UCSC] – I'm the UCSC staff point-person for the [http://www.genome.gov/10005107 ENCODE Project] [[Image:encodelogo.gif|right|px 50]] | * [http://genome.ucsc.edu/ENCODE ENCODE at UCSC] – I'm the UCSC staff point-person for the [http://www.genome.gov/10005107 ENCODE Project] [[Image:encodelogo.gif|right|px 50]] | ||
* MAF custom track implementation | |||
* | * Browser work for NHGRI Tumor Sequencing Project | ||
* | |||
* Comparative genomics track enhancements – alternate conservation scores, chain/net mega-tracks | * Comparative genomics track enhancements – alternate conservation scores, chain/net mega-tracks | ||
* Composite track features – multiple configuration panels for mixed-types | * Composite track features – multiple configuration panels for mixed-types | ||
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== Past Projects == | == Past Projects == | ||
* Chimpanzee genome browsers [[Image:chimp.jpg|170 px|right]] | * Chimpanzee genome browsers [[Image:chimp.jpg|170 px|right]] | ||
* Custom tracks management interface (hgCustom) | |||
* Composite track implementation | * Composite track implementation | ||
* Multiple alignments and conservation scoring | * Multiple alignments and conservation scoring | ||
Latest revision as of 01:02, 23 February 2007
I've been a genome browser software developer at UCSC since April 2003. Before that, I worked in the software industry for several decades, working primarily in scientific and technical applications areas. It's great to be able to apply my Unix/C/programming expertise to my favorite application area -- Human Biology (which was actually my major in college). Unfortunately, we didn't have introns then... Kate Rosenbloom
Current Projects
- Multiple alignment of 28 vertebrate species
- ENCODE at UCSC – I'm the UCSC staff point-person for the ENCODE Project
- MAF custom track implementation
- Browser work for NHGRI Tumor Sequencing Project
- Comparative genomics track enhancements – alternate conservation scores, chain/net mega-tracks
- Composite track features – multiple configuration panels for mixed-types
Past Projects
- Chimpanzee genome browsers
- Custom tracks management interface (hgCustom)
- Composite track implementation
- Multiple alignments and conservation scoring
- ENCODE orthologous region sequences
- Coordinate conversion web utility (hgLiftOver)
- Conservation track display
- Fugu genome browser
