Learn about the Browser: Difference between revisions
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* Look at the [http://genome-test.cse.ucsc.edu/eng/ old website with lots of developer documentation] and [http://genome-test.cse.ucsc.edu/admin/ a similar place with hgSearchSpec docs and statistics] | * Look at the [http://genome-test.cse.ucsc.edu/eng/ old website with lots of developer documentation] and [http://genome-test.cse.ucsc.edu/admin/ a similar place with hgSearchSpec docs and statistics] | ||
* [http://genome.ucsc.edu/admin/mirror.html Mirror the browser on your machine], [http://genome.ucsc.edu/mirror.html search through its mailing list] and read the documentation in [http://www.cse.ucsc.edu/~kent/src/unzipped/product/ src/product] | * [http://genome.ucsc.edu/admin/mirror.html Mirror the browser on your machine], [http://genome.ucsc.edu/mirror.html search through its mailing list] and read the documentation in [http://www.cse.ucsc.edu/~kent/src/unzipped/product/ src/product] | ||
** | ** Read how the original annotations were created, in the [http://www.cse.ucsc.edu/~kent/src/unzipped/hg/makeDb/ makeDb-files] and create your own annotations as textfiles | ||
** Load them onto the browser: Read Jim's Documentation how to add your own tracks to your own browser (in kent/src/hg/makeDb/addTrack.doc) and [http://www.soe.ucsc.edu/~sugnet/doc/trackHowto/browserTalk.pdf Charles Sugnet's presentation] about this | |||
* [http://genome.ucsc.edu/admin/jk-install.html Install] [[the source tree]] and play with its tools, [http://genome.ucsc.edu/contacts.html searching through the archives] or this [http://genomewiki.cse.ucsc.edu/index.php/Category:Technical wiki], or browser the list of [[Kent source utilities]] available | * [http://genome.ucsc.edu/admin/jk-install.html Install] [[the source tree]] and play with its tools, [http://genome.ucsc.edu/contacts.html searching through the archives] or this [http://genomewiki.cse.ucsc.edu/index.php/Category:Technical wiki], or browser the list of [[Kent source utilities]] available | ||
* [http://genome.ucsc.edu/FAQ/FAQlicense#license4 Sequence a genome of a random animal and put it into into your browser] | |||
* [http://genome.ucsc.edu/FAQ/FAQlicense#license4 | |||
[[Category:Technical FAQ]] | [[Category:Technical FAQ]] | ||
Revision as of 20:00, 18 March 2007
Documentation is somewhat dispersed, now let's see where we can learn something about this thing...
- Follow the video tutorials and browse through the slides at Openhelix.
- Read the User's guide and the FAQs
- Type in (manually) a couple of custom tracks in different formats
- Subscribe to the mailing list or search through it
- Look at the old website with lots of developer documentation and a similar place with hgSearchSpec docs and statistics
- Mirror the browser on your machine, search through its mailing list and read the documentation in src/product
- Read how the original annotations were created, in the makeDb-files and create your own annotations as textfiles
- Load them onto the browser: Read Jim's Documentation how to add your own tracks to your own browser (in kent/src/hg/makeDb/addTrack.doc) and Charles Sugnet's presentation about this
- Install the source tree and play with its tools, searching through the archives or this wiki, or browser the list of Kent source utilities available
- Sequence a genome of a random animal and put it into into your browser
