Hg19 Genome size statistics: Difference between revisions
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<LI>[[Hg19 conservation alignment]]</LI> | <LI>[[Hg19 conservation alignment]]</LI> | ||
<LI>[[Hg19 conservation lastz parameters]]</LI> | <LI>[[Hg19 conservation lastz parameters]]</LI> | ||
<LI>[[Hg18 44way alignment]]</LI> | |||
<LI>[[Hg18 44way blastz parameters]]</LI> | |||
<LI>[[Genome size statistics|Hg18 genome size statistics]]</LI> | |||
</UL> | </UL> | ||
Revision as of 16:54, 13 May 2009
see also
- Hg19 conservation alignment
- Hg19 conservation lastz parameters
- Hg18 44way alignment
- Hg18 44way blastz parameters
- Hg18 genome size statistics
statistics collected from UCSC 2bit files
- N bases == unknown bases in the assembly marked by 'N'
- non-N bases == called bases in the assembly
- total size == all bases in assembly, N and non-N
- % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
- % of hg19 matched (chainLink table) == featureBits hg19 chain<Db>Link == alignment coverage
