XenTro3 conservation lastz parameters: Difference between revisions
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<TR> | <TR> | ||
<TH>Turkey melGal1</TH> | <TH>Turkey melGal1</TH> | ||
<TD>no</TD><TD>0</TD><TD> | <TD>no</TD><TD>0</TD><TD>2200</TD><TD>8000</TD><TD>HoxD55.q</TD> | ||
<TD> | <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD> | ||
<TD>2011-09- | <TD>2011-09-28</TD><TD ALIGN=RIGHT>4.203%</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>5.244%</TD></TR> | ||
<TR> | <TR> | ||
<TH>Opossum monDom5</TH> | <TH>Opossum monDom5</TH> | ||
Latest revision as of 17:21, 28 September 2011
See Also
- X. tropicalis 8-way XenTro3 Genome size statistics
- X. tropicalis 8-way XenTro3 conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of xenTro3 matched (chainLink table) |
% of query matched (chainLinkXenTro3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lizard anoCar2 | no | 50 | 2200 | 8000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-20 | 6.775% | 5.110% |
| Chicken galGal3 | no | 0 | 2200 | 8000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-20 | 4.730% | 5.273% |
| Turkey melGal1 | no | 0 | 2200 | 8000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-28 | 4.203% | 5.244% |
| Opossum monDom5 | no | 0 | 2200 | 8000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-23 | 5.492% | 2.144% |
| Rat rn4 | no | 0 | 2200 | 8000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-23 | 5.216% | 2.574% |
| Mouse mm9 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-21 | 6.609% | 3.126% |
| Human hg19 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-21 | 6.694% | 3.035% |
| Zebrafish danRer7 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2011-09-21 | 7.107% | 6.510% |
