Rn5 13-way conservation alignment: Difference between revisions
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<TD>2012-12-01</TD><TD ALIGN=RIGHT>29.127%</TD> | <TD>2012-12-01</TD><TD ALIGN=RIGHT>29.127%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD> | ||
<TD> | <TD>Dec. 2013 (GRCh38/hg38)</TD> | ||
<TD> | <TD>GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2014-01-10</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-12-25</TD> | ||
<TD> | <TD>2014-03-26</TD><TD ALIGN=RIGHT>36.312%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD> | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/10627 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AACZ03 Pan<BR>troglodytes]</TD><TD>Chimp</TD> | ||
Latest revision as of 18:44, 5 June 2014
see also
- Rat 13-way Rn5 13-way Genome size statistics
- Rat 13-way Rn5 13-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on rn5 |
% of rn5 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | rn5 | Rattus norvegicus | Rat | Mar. 2012 (RGSC 5.0/rn5) | RGSC Rnor_5.0 (GCA_000001895.3) | 2012-03-21 | 2012-03-21 | N/A | N/A |
| 02 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2012-03-27 | 70.278% |
| 03 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2012-12-01 | 29.127% |
| 04 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | 2014-03-26 | 36.312% |
| 05 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2012-12-01 | 35.616% |
| 06 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2012-07-11 | 34.835% |
| 07 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2012-12-03 | 29.852% |
| 08 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | 2013-06-21 | 2012-12-01 | 31.818% |
| 09 | bosTau7 | Bos taurus | Cow | Oct. 2011 (Baylor Btau_4.6.1/bosTau7) | Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) | 2012-01-04 | 2012-01-06 | 2012-12-01 | 26.820% |
| 10 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2012-12-04 | 9.694% |
| 11 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2012-11-30 | 3.788% |
| 12 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | 2013-06-21 | 2012-11-14 | 3.630% |
| 13 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | 2013-06-21 | 2012-11-14 | 2.588% |
