Hg38 100-way conservation alignment: Difference between revisions
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<TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD> | <TD>2014-12-12</TD><TD ALIGN=RIGHT>86.379%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/310688/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac3 rheMac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEHK01 Macaca<BR>mulatta]</TD><TD>Rhesus</TD> | ||
<TD>Oct. 2010 (BGI CR_1.0/rheMac3)</TD> | |||
<TD>Beijing Genomics Institute, Shenzhen (GCA_000230795.1)</TD> | |||
<TD ALIGN=RIGHT>2011-12-30</TD> | |||
<TD ALIGN=RIGHT>2012-01-03</TD> | |||
<TD>2015-04-09</TD><TD ALIGN=RIGHT>80.828%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Macaca_fascicularis/Macaca_fascicularis_5.0/ Macaca<BR>fascicularis]</TD><TD>Crab-eating macaque</TD> | |||
<TD>Jun 2013 (Macaca_fascicularis_5.0/macFas5)</TD> | <TD>Jun 2013 (Macaca_fascicularis_5.0/macFas5)</TD> | ||
<TD>Washington University (WashU) GCA_000364345.1</TD> | <TD>Washington University (WashU) GCA_000364345.1</TD> | ||
| Line 66: | Line 73: | ||
<TD ALIGN=RIGHT>2013-06-30</TD> | <TD ALIGN=RIGHT>2013-06-30</TD> | ||
<TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD> | <TD>2014-12-14</TD><TD ALIGN=RIGHT>85.675%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD> | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/54005 08]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHZZ01 Papio<BR>anubis]</TD><TD>Baboon</TD> | ||
| Line 81: | Line 81: | ||
<TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD> | <TD>2014-12-13</TD><TD ALIGN=RIGHT>84.179%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/PRJNA168621 09]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chlSab2 chlSab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AQIB01 Chlorocebus<BR>sabaeus]</TD><TD>Green monkey</TD> | ||
<TD>Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)</TD> | |||
<TD> | |||
<TD>Vervet Genomics Consortium GCA_000409795.2</TD> | <TD>Vervet Genomics Consortium GCA_000409795.2</TD> | ||
<TD ALIGN=RIGHT>2014-04-10</TD> | <TD ALIGN=RIGHT>2014-04-10</TD> | ||
| Line 95: | Line 88: | ||
<TD>2014-07-11</TD><TD ALIGN=RIGHT>84.393%</TD> | <TD>2014-07-11</TD><TD ALIGN=RIGHT>84.393%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ | <TH>[http://genome.wustl.edu/genomes/view/callithrix_jacchus/ 10]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACFV00 Callithrix<BR>jacchus]</TD><TD>Marmoset</TD> | ||
<TD>March 2009 (WUGSC 3.2/calJac3)</TD> | <TD>March 2009 (WUGSC 3.2/calJac3)</TD> | ||
<TD>WUSTL 3.2 (GCA_000004665.1)</TD> | <TD>WUSTL 3.2 (GCA_000004665.1)</TD> | ||
| Line 102: | Line 95: | ||
<TD>2014-12-13</TD><TD ALIGN=RIGHT>71.709%</TD> | <TD>2014-12-13</TD><TD ALIGN=RIGHT>71.709%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/67945 11]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGCE01 Saimiri<BR>boliviensis]</TD><TD>Squirrel monkey</TD> | ||
<TD> | <TD>Oct. 2011 (Broad/saiBol1)</TD> | ||
<TD>Broad | <TD>Broad SaiBol1.0 (GCA_000235385.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-07</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-09</TD> | ||
<TD> | <TD>2014-12-13</TD><TD ALIGN=RIGHT>70.565%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 12]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAQR03 Otolemur<BR>garnettii]</TD><TD>Bushbaby</TD> | ||
<TD>Mar. 2011 (Broad/otoGar3)</TD> | <TD>Mar. 2011 (Broad/otoGar3)</TD> | ||
<TD>Broad Institute (GCA_000181295.3)</TD> | <TD>Broad Institute (GCA_000181295.3)</TD> | ||
<TD ALIGN=RIGHT>2012-03-13</TD> | <TD ALIGN=RIGHT>2012-03-13</TD> | ||
<TD ALIGN=RIGHT>2012-03-14</TD> | <TD ALIGN=RIGHT>2012-03-14</TD> | ||
<TD> | <TD>2015-02-23</TD><TD ALIGN=RIGHT>53.196%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 13]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Tupaia_chinensis/TupChi_1.0/ Tupaia<BR>chinensis]</TD><TD>Chinese tree shrew</TD> | |||
<TD>Jan 2013 (TupChi_1.0/tupChi1)</TD> | |||
<TD>BGI GCA_000334495.1</TD> | |||
<TD ALIGN=RIGHT>2013-07-05</TD> | |||
<TD ALIGN=RIGHT>2013-07-05</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>45.256%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 14]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Spermophilus<BR>tridecemlineatus]</TD><TD>Squirrel</TD> | |||
<TD>Nov. 2011 (Broad/speTri2)</TD> | |||
<TD>Broad Institute (GCA_000236235.1)</TD> | |||
<TD ALIGN=RIGHT>2012-03-14</TD> | |||
<TD ALIGN=RIGHT>2012-03-15</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>48.283%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 15]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=jacJac1 jacJac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Jaculus_jaculus/JacJac1.0/ Jaculus<BR>jaculus]</TD><TD>Lesser Egyptian jerboa</TD> | ||
<TD>May 2012 ( | <TD>May 2012 (JacJac1.0/jacJac1)</TD> | ||
<TD>Broad Institute</TD> | <TD>Broad Institute GCA_000280705.1</TD> | ||
<TD ALIGN=RIGHT>2012-08- | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>34.153%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 16]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=micOch1 micOch1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Microtus_ochrogaster/MicOch1.0/ Microtus<BR>ochrogaster]</TD><TD>Prairie vole</TD> | |||
<TD>Oct 2012 (MicOch1.0/micOch1)</TD> | |||
<TD>Broad Institute GCA_000317375.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>31.489%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 17]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Cricetulus_griseus/C_griseus_v1.0/ Cricetulus<BR>griseus]</TD><TD>Chinese hamster</TD> | ||
<TD> | <TD>Jul. 2013 (C_griseus_v1.0/criGri1)</TD> | ||
<TD> | <TD>Beijing Genomics Institution-Shenzhen</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2014-04-04</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>2015-02-20</TD><TD ALIGN=RIGHT>33.169%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 18]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mesAur1 mesAur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mesocricetus_auratus/MesAur1.0/ Mesocricetus<BR>auratus]</TD><TD>Golden hamster</TD> | ||
<TD> | <TD>Mar 2013 (MesAur1.0/mesAur1)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute GCA_000349665.1</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>30.803%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/327618/ 19]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10]</TH><TD>[http://www.ncbi.nlm.nih.gov/bioproject/51977 Mus<BR>musculus]</TD><TD>Mouse</TD> | ||
<TD> | <TD>Dec. 2011 (GRCm38/mm10)</TD> | ||
<TD> | <TD>Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2012-02-06</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2012-02-07</TD> | ||
<TD> | <TD>2015-04-09</TD><TD ALIGN=RIGHT>31.653%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001895.4 20]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=rn6 rn6]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AABR07 Rattus<BR>norvegicus]</TD><TD>Rat</TD> | |||
<TD>Jul. 2014 (RGSC 6.0/rn6)</TD> | |||
<TD>RGSC Rnor_6.0</TD> | |||
<TD ALIGN=RIGHT>2014-07-08</TD> | |||
<TD ALIGN=RIGHT>2014-07-09</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>31.077%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/72441 21]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHKG01 Heterocephalus<BR>glaber]</TD><TD>Naked mole-rat</TD> | |||
<TD>Jan. 2012 (Broad HetGla_female_1.0/hetGla2)</TD> | |||
<TD>Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)</TD> | |||
<TD ALIGN=RIGHT>2012-04-14</TD> | |||
<TD ALIGN=RIGHT>2012-04-14</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>46.248%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/304568/ 22]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAKN02 Cavia<BR>porcellus]</TD><TD>Guinea pig</TD> | |||
<TD>Feb. 2008 (Broad/cavPor3)</TD> | |||
<TD>Broad Institute cavPor3</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD>2015-04-28</TD><TD ALIGN=RIGHT>42.371%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ 23]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chiLan1 chiLan1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chinchilla_lanigera/ChiLan1.0/ Chinchilla<BR>lanigera]</TD><TD>Chinchilla</TD> | |||
<TD>May 2012 (ChiLan1.0/chiLan1)</TD> | |||
<TD>Broad Institute</TD> | |||
<TD ALIGN=RIGHT>2012-07-28</TD> | |||
<TD ALIGN=RIGHT>2012-07-27</TD> | |||
<TD>2015-04-28</TD><TD ALIGN=RIGHT>45.665%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 24]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=octDeg1 octDeg1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Octodon_degus/OctDeg1.0/ Octodon<BR>degus]</TD><TD>Brush-tailed rat</TD> | |||
<TD>Apr 2012 (OctDeg1.0/octDeg1)</TD> | |||
<TD>Broad Institute GCA_000260255.1</TD> | |||
<TD ALIGN=RIGHT>2013-07-07</TD> | |||
<TD ALIGN=RIGHT>2013-07-07</TD> | |||
<TD>2015-04-24</TD><TD ALIGN=RIGHT>40.238%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/rabbit/oryCun2/ 25]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGW00 Oryctolagus<BR>cuniculus]</TD><TD>Rabbit</TD> | ||
<TD> | <TD>Apr. 2009 (Broad/oryCun2)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)</TD> | ||
<TD ALIGN=RIGHT>2009- | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2015-04-28</TD><TD ALIGN=RIGHT>42.911%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000292845.1/ 26]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ochotona_princeps/OchPri3.0/ Ochotona<BR>princeps]</TD><TD>Pika</TD> | |||
<TD>May 2012 (OchPri3.0/ochPri3)</TD> | |||
<TD>Broad Institute</TD> | |||
<TD ALIGN=RIGHT>2013-06-20</TD> | |||
<TD ALIGN=RIGHT>2013-06-18</TD> | |||
<TD>2015-04-28</TD><TD ALIGN=RIGHT>33.618%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/13421 27]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEMK01 Sus<BR>scrofa]</TD><TD>Pig</TD> | ||
<TD> | <TD>Aug. 2011 (SGSC Sscrofa10.2/susScr3)</TD> | ||
<TD> | <TD>SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-12</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-04-13</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>44.676%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 28]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Vicugna<BR>pacos]</TD><TD>Alpaca</TD> | ||
<TD>Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)</TD> | <TD>Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2)</TD> | ||
<TD>Broad Institute</TD> | <TD>Broad Institute</TD> | ||
<TD ALIGN=RIGHT>2013-06-10</TD> | <TD ALIGN=RIGHT>2013-06-10</TD> | ||
<TD ALIGN=RIGHT>2013-06-10</TD> | <TD ALIGN=RIGHT>2013-06-10</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>48.909%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 29]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Camelus<BR>ferus]</TD><TD>Bactrian camel</TD> | ||
<TD>Dec 2011 (CB1/camFer1)</TD> | |||
<TD>The Bactrian Camels Genome Sequencing and Analysis Consortium GCA_000311805.1</TD> | |||
<TD ALIGN=RIGHT>2013-07-12</TD> | |||
<TD ALIGN=RIGHT>2013-07-12</TD> | |||
<TD>2015-04-24</TD><TD ALIGN=RIGHT>49.095%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/20365 30]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Tursiops<BR>truncatus]</TD><TD>Dolphin</TD> | |||
<TD>Oct. 2011 (Baylor Ttru_1.4/turTru2)</TD> | <TD>Oct. 2011 (Baylor Ttru_1.4/turTru2)</TD> | ||
<TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD> | <TD>Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)</TD> | ||
<TD ALIGN=RIGHT>2012-04-14</TD> | <TD ALIGN=RIGHT>2012-04-14</TD> | ||
<TD ALIGN=RIGHT>2012-04-14</TD> | <TD ALIGN=RIGHT>2012-04-14</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>49.728%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 31]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=orcOrc1 orcOrc1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Orcinus<BR>orca]</TD><TD>Killer whale</TD> | ||
<TD>Jan 2013 (Oorc_1.1/orcOrc1)</TD> | <TD>Jan 2013 (Oorc_1.1/orcOrc1)</TD> | ||
<TD>Marine mammals GCA_000331955.1</TD> | <TD>Marine mammals GCA_000331955.1</TD> | ||
<TD ALIGN=RIGHT>2013-08-20</TD> | <TD ALIGN=RIGHT>2013-08-20</TD> | ||
<TD ALIGN=RIGHT>2013-08-20</TD> | <TD ALIGN=RIGHT>2013-08-20</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>50.709%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 32]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=panHod1 panHod1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pantholops_hodgsonii/PHO1.0/ Pantholops<BR>hodgsonii]</TD><TD>Tibetan antelope</TD> | ||
<TD> | <TD>May 2013 (PHO1.0/panHod1)</TD> | ||
<TD> | <TD>BGI GCA_000400835.1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD> | <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.619%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/189361 33]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=DAAA02 Bos<BR>taurus]</TD><TD>Cow</TD> | |||
<TD>Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8)</TD> | |||
<TD>University of Maryland Bos_taurus_UMD_3.1.1</TD> | |||
<TD ALIGN=RIGHT>2014-09-11</TD> | |||
<TD ALIGN=RIGHT>2014-09-12</TD> | |||
<TD>2014-10-16</TD><TD ALIGN=RIGHT>45.975%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298735.1/ 34]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ovis_aries/Oar_v3.1/ Ovis<BR>aries]</TD><TD>Sheep</TD> | ||
<TD>Aug 2012 ( | <TD>Aug. 2012 (ISGC Oar_v3.1/oviAri3)</TD> | ||
<TD> | <TD>International Sheep Genome Consortium</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-06-10</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-06-09</TD> | ||
<TD> | <TD>2015-04-27</TD><TD ALIGN=RIGHT>45.352%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 35]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=capHir1 capHir1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Capra_hircus/CHIR_1.0/ Capra<BR>hircus]</TD><TD>Domestic goat</TD> | ||
<TD> | <TD>May 2012 (CHIR_1.0/capHir1)</TD> | ||
<TD> | <TD>International Goat Genome Consortium GCA_000317765.1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-15</TD> | ||
<TD> | <TD>2015-04-28</TD><TD ALIGN=RIGHT>45.257%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 36]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Equus<BR>caballus]</TD><TD>Horse</TD> | ||
<TD> | <TD>Sep. 2007 (Broad/equCab2)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute EquCab2</TD> | ||
<TD ALIGN=RIGHT>2009- | <TD ALIGN=RIGHT>2009-08-14</TD> | ||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2015-02-23</TD><TD ALIGN=RIGHT>55.459%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000283155.1/ 37]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ Ceratotherium<BR>simum]</TD><TD>White rhinoceros</TD> | ||
<TD> | <TD>May 2012 (CerSimSim1.0/cerSim1)</TD> | ||
<TD>Broad Institute | <TD>Broad Institute</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-08-28</TD> | ||
<TD ALIGN=RIGHT>2012- | <TD ALIGN=RIGHT>2012-08-28</TD> | ||
<TD> | <TD>2015-02-23</TD><TD ALIGN=RIGHT>56.633%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ 38]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ Felis<BR>catus]</TD><TD>Cat</TD> | |||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Felis_catus/all_assembly_versions/GCA_000181335.3_Felis_catus_8.0/ | |||
<TD>Nov. 2014 (ICGSC Felis_catus_8.0/felCat8)</TD> | <TD>Nov. 2014 (ICGSC Felis_catus_8.0/felCat8)</TD> | ||
<TD>International Cat Genome Sequencing Consortium</TD> | <TD>International Cat Genome Sequencing Consortium</TD> | ||
<TD ALIGN=RIGHT>2014-11-22</TD> | <TD ALIGN=RIGHT>2014-11-22</TD> | ||
<TD ALIGN=RIGHT>2014-11-22</TD> | <TD ALIGN=RIGHT>2014-11-22</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>51.684%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.ncbi.nlm.nih.gov/genome/85 39]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAEX00 Canis<BR>lupus<BR>familiaris]</TD><TD>Dog</TD> | ||
<TD> | <TD>Sep. 2011 (Broad CanFam3.1/canFam3)</TD> | ||
<TD> | <TD>Broad CanFam3.1 (GCA_000002285.2)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-05</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-01-06</TD> | ||
<TD> | <TD>2015-04-10</TD><TD ALIGN=RIGHT>50.395%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000215625.1 40]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=musFur1 musFur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Mustela_putorius/MusPutFur1.0/ Mustela<BR>putorius<BR>furo]</TD><TD>Ferret </TD> | ||
<TD>Apr. 2011 (MusPutFur1.0/musFur1)</TD> | <TD>Apr. 2011 (MusPutFur1.0/musFur1)</TD> | ||
<TD>Ferret Genome Sequencing Consortium</TD> | <TD>Ferret Genome Sequencing Consortium</TD> | ||
<TD ALIGN=RIGHT>2013-03-05</TD> | <TD ALIGN=RIGHT>2013-03-05</TD> | ||
<TD ALIGN=RIGHT>2013-03-05</TD> | <TD ALIGN=RIGHT>2013-03-05</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>49.631%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov:genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/ 41]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ACTA00 Ailuropoda<BR>melanoleuca]</TD><TD>Panda</TD> | ||
<TD>Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)</TD> | |||
<TD>BGI-Shenzhen AilMel 1.0 Dec. 2009</TD> | |||
<TD ALIGN=RIGHT>2010-02-03</TD> | |||
<TD>Dec. | |||
<TD | |||
<TD ALIGN=RIGHT> | |||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2015-02-12</TD><TD ALIGN=RIGHT>48.226%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 42]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=odoRosDiv1 odoRosDiv1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Odobenus_rosmarus/Oros_1.0/ Odobenus<BR>rosmarus<BR>divergens]</TD><TD>Pacific walrus</TD> | ||
<TD> | <TD>Jan 2013 (Oros_1.0/odoRosDiv1)</TD> | ||
<TD> | <TD>Marine mammals GCA_000321225.1</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2013-07-12</TD> | ||
<TD ALIGN=RIGHT>2013-07- | <TD ALIGN=RIGHT>2013-07-12</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>52.193%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 43]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=lepWed1 lepWed1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Leptonychotes_weddellii/LepWed1.0/ Leptonychotes<BR>weddellii]</TD><TD>Weddell seal</TD> | ||
<TD>Mar 2013 (LepWed1.0/lepWed1)</TD> | <TD>Mar 2013 (LepWed1.0/lepWed1)</TD> | ||
<TD>Broad Institute GCA_000349705.1</TD> | <TD>Broad Institute GCA_000349705.1</TD> | ||
<TD ALIGN=RIGHT>2013-07-11</TD> | <TD ALIGN=RIGHT>2013-07-11</TD> | ||
<TD ALIGN=RIGHT>2013-07-11</TD> | <TD ALIGN=RIGHT>2013-07-11</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>51.073%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 44]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Pteropus_alecto/ASM32557v1/ Pteropus<BR>alecto]</TD><TD>Black flying-fox</TD> | |||
<TD>Aug 2012 (ASM32557v1/pteAle1)</TD> | |||
<TD>BGI GCA_000325575.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>48.281%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[ftp://ftp.broad.mit.edu/pub/assemblies/mammals/megabat/Ptevap1.0/ 45]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pteVam1 pteVam1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRP00 Pteropus<BR>vampyrus]</TD><TD>Megabat</TD> | ||
<TD> | <TD>Jul. 2008 (Broad/pteVam1)</TD> | ||
<TD> | <TD>Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2012-05-02</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>43.924%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 46]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Eptesicus<BR>fuscus]</TD><TD>Big brown bat</TD> | |||
<TD>Jul 2012 (EptFus1.0/eptFus1)</TD> | |||
<TD>Broad Institute GCA_000308155.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>2015-04-24</TD><TD ALIGN=RIGHT>39.123%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 47]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoDav1 myoDav1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_davidii/ASM32734v1/ Myotis<BR>davidii]</TD><TD>David's myotis (bat)</TD> | ||
<TD>Aug 2012 (ASM32734v1/myoDav1)</TD> | <TD>Aug 2012 (ASM32734v1/myoDav1)</TD> | ||
<TD>BGI GCA_000327345.1</TD> | <TD>BGI GCA_000327345.1</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>2015-04-28</TD><TD ALIGN=RIGHT>38.713%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/614 48]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00 Myotis<BR>lucifugus]</TD><TD>Microbat</TD> | ||
<TD> | <TD>Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2)</TD> | ||
<TD> | <TD>Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2010-11-03</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2015-04-28</TD><TD ALIGN=RIGHT>38.591%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296755.1/ 49]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Erinaceus_europaeus/EriEur2.0/ Erinaceus<BR>europaeus]</TD><TD>Hedgehog</TD> | |||
<TD>May 2012 (EriEur2.0/eriEur2)</TD> | |||
<TD>Broad Institute EriEur2.0</TD> | |||
<TD ALIGN=RIGHT>2013-06-12</TD> | |||
<TD ALIGN=RIGHT>2013-06-07</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>25.488%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ 50]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Sorex_araneus/SorAra2.0/ Sorex<BR>araneus]</TD><TD>Shrew</TD> | ||
<TD> | <TD>Aug. 2008 (Broad/sorAra2)</TD> | ||
<TD> | <TD>Broad Institute SorAra2.0</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-05-29</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-05-29</TD> | ||
<TD> | <TD>2015-02-20</TD><TD ALIGN=RIGHT>26.905%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 51]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=conCri1 conCri1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Condylura_cristata/ConCri1.0/ Condylura<BR>cristata]</TD><TD>Star-nosed mole</TD> | ||
<TD> | <TD>Mar 2012 (ConCri1.0/conCri1)</TD> | ||
<TD> | <TD>Broad Institute GCA_000260355.1</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-07-09</TD> | ||
<TD ALIGN=RIGHT>2013- | <TD ALIGN=RIGHT>2013-07-09</TD> | ||
<TD>2015- | <TD>2015-04-29</TD><TD ALIGN=RIGHT>35.911%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www. | <TH>[http://www.broadinstitute.org/science/projects/mammals-models/elephant/elephant 52]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGU00 Loxodonta<BR>africana]</TD><TD>Elephant</TD> | ||
<TD>Jul. | <TD>Jul. 2009 (Broad/loxAfr3)</TD> | ||
<TD>Broad Institute (NCBI | <TD>Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>45.214%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 53]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=eleEdw1 eleEdw1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Elephantulus_edwardii/EleEdw1.0/ Elephantulus<BR>edwardii]</TD><TD>Cape elephant shrew</TD> | ||
<TD>Aug 2012 (EleEdw1.0/eleEdw1)</TD> | <TD>Aug 2012 (EleEdw1.0/eleEdw1)</TD> | ||
<TD>Broad Institute GCA_000299155.1</TD> | <TD>Broad Institute GCA_000299155.1</TD> | ||
<TD ALIGN=RIGHT>2013-07-07</TD> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD ALIGN=RIGHT>2013-07-07</TD> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>26.839%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/10467 | <TH>[http://www.ncbi.nlm.nih.gov/genome/10467 54]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHIN01 Trichechus<BR>manatus<BR>latirostris]</TD><TD>Manatee</TD> | ||
<TD>Oct. 2011 (Broad v1.0/triMan1)</TD> | <TD>Oct. 2011 (Broad v1.0/triMan1)</TD> | ||
<TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD> | <TD>Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)</TD> | ||
<TD ALIGN=RIGHT>2012-03-28</TD> | <TD ALIGN=RIGHT>2012-03-28</TD> | ||
<TD ALIGN=RIGHT>2012-03-29</TD> | <TD ALIGN=RIGHT>2012-03-29</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>45.346%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 55]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Chrysochloris<BR>asiatica]</TD><TD>Cape golden mole</TD> | ||
<TD>Aug 2012 (ChrAsi1.0/chrAsi1)</TD> | |||
<TD>Broad Institute GCA_000296735.1</TD> | |||
<TD> | |||
<TD>Broad Institute | |||
<TD ALIGN=RIGHT>2013-07-07</TD> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD ALIGN=RIGHT>2013-07-07</TD> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD> | <TD>2015-02-20</TD><TD ALIGN=RIGHT>33.314%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/ 56]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Echinops_telfairi/EchTel2.0/ Echinops<BR>telfairi]</TD><TD>Tenrec</TD> | ||
<TD>Nov. 2012 (Broad/echTel2)</TD> | <TD>Nov. 2012 (Broad/echTel2)</TD> | ||
<TD>Broad/EchTel2.0</TD> | <TD>Broad/EchTel2.0</TD> | ||
<TD ALIGN=RIGHT>2013-05-30</TD> | <TD ALIGN=RIGHT>2013-05-30</TD> | ||
<TD ALIGN=RIGHT>2013-05-30</TD> | <TD ALIGN=RIGHT>2013-05-30</TD> | ||
<TD> | <TD>2015-04-29</TD><TD ALIGN=RIGHT>29.310%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 57]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryAfe1 oryAfe1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Orycteropus<BR>afer<BR>afer]</TD><TD>Aardvark</TD> | ||
<TD> | <TD>May 2012 (OryAfe1.0/oryAfe1)</TD> | ||
<TD> | <TD>Broad Institute GCA_000298275.1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-07-07</TD> | ||
<TD> | <TD>2015-04-23</TD><TD ALIGN=RIGHT>40.563%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/12594 58]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAGV03 Dasypus<BR>novemcinctus]</TD><TD>Armadillo</TD> | ||
<TD> | <TD>Dec. 2011 (Baylor/dasNov3)</TD> | ||
<TD> | <TD>Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)</TD> | ||
<TD ALIGN=RIGHT>2012-04-12</TD> | |||
<TD ALIGN=RIGHT>2012-04-13</TD> | |||
<TD>2015-04-29</TD><TD ALIGN=RIGHT>45.349%</TD> | |||
<TD ALIGN=RIGHT> | |||
<TD | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.broadinstitute.org/mammals/opossum 59]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD> | |||
<TH>[http://www.broadinstitute.org/mammals/opossum | |||
<TD>Oct. 2006 (Broad/monDom5)</TD> | <TD>Oct. 2006 (Broad/monDom5)</TD> | ||
<TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD> | <TD>Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000)</TD> | ||
| Line 445: | Line 438: | ||
<TD>2014-05-29</TD><TD ALIGN=RIGHT>14.370%</TD> | <TD>2014-05-29</TD><TD ALIGN=RIGHT>14.370%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/3066 | <TH>[http://www.ncbi.nlm.nih.gov/genome/3066 60]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFK00 Sarcophilus<BR>harrisii]</TD><TD>Tasmanian devil</TD> | ||
<TD>Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)</TD> | <TD>Feb. 2011 (WTSI Devil_ref v7.0/sarHar1)</TD> | ||
<TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD> | <TD>Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)</TD> | ||
<TD ALIGN=RIGHT>2012-02-02</TD> | <TD ALIGN=RIGHT>2012-02-02</TD> | ||
<TD ALIGN=RIGHT>2012-02-08</TD> | <TD ALIGN=RIGHT>2012-02-08</TD> | ||
<TD> | <TD>2015-02-14</TD><TD ALIGN=RIGHT>12.754%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/233 61]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=macEug2 macEug2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABQO00 Macropus<BR>eugenii]</TD><TD>Wallaby</TD> | ||
<TD> | <TD>Sep. 2009 (TWGS Meug_1.1/macEug2)</TD> | ||
<TD> | <TD>TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2010-11-05</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2011-12-02</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>6.378%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/110 62]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAPN00 Ornithorhynchus<BR>anatinus]</TD><TD>Platypus</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/110 | |||
<TD>Mar. 2007 (WUGSC 5.0.1/ornAna1)</TD> | <TD>Mar. 2007 (WUGSC 5.0.1/ornAna1)</TD> | ||
<TD>WUSTL version 5.0.1</TD> | <TD>WUSTL version 5.0.1</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>2013-06-22</TD> | <TD ALIGN=RIGHT>2013-06-22</TD> | ||
<TD> | <TD>2015-02-13</TD><TD ALIGN=RIGHT>7.769%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 63]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=colLiv1 colLiv1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Columba_livia/Cliv_1.0/ Columba<BR>livia]</TD><TD>Rock pigeon</TD> | ||
<TD>Feb 2013 (Cliv_1.0/colLiv1)</TD> | <TD>Feb 2013 (Cliv_1.0/colLiv1)</TD> | ||
<TD>BGI GCA_000337935.1</TD> | <TD>BGI GCA_000337935.1</TD> | ||
<TD ALIGN=RIGHT>2013-06-27</TD> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD ALIGN=RIGHT>2013-06-27</TD> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD> | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.712%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 64]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=falChe1 falChe1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_cherrug/F_cherrug_v1.0/ Falco<BR>cherrug]</TD><TD>Saker falcon</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ | |||
<TD>Feb 2013 (F_cherrug_v1.0/falChe1)</TD> | <TD>Feb 2013 (F_cherrug_v1.0/falChe1)</TD> | ||
<TD>BGI GCA_000337975.1</TD> | <TD>BGI GCA_000337975.1</TD> | ||
<TD ALIGN=RIGHT>2013-06-27</TD> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD ALIGN=RIGHT>2013-06-27</TD> | <TD ALIGN=RIGHT>2013-06-27</TD> | ||
<TD> | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.828%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 65]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=falPer1 falPer1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Falco_peregrinus/F_peregrinus_v1.0/ Falco<BR>peregrinus]</TD><TD>Peregrine falcon</TD> | ||
<TD>Feb 2013 (F_peregrinus_v1.0/falPer1)</TD> | <TD>Feb 2013 (F_peregrinus_v1.0/falPer1)</TD> | ||
<TD>BGI GCA_000337955.1</TD> | <TD>BGI GCA_000337955.1</TD> | ||
<TD ALIGN=RIGHT>2013-06-28</TD> | <TD ALIGN=RIGHT>2013-06-28</TD> | ||
<TD ALIGN=RIGHT>2013-06-28</TD> | <TD ALIGN=RIGHT>2013-06-28</TD> | ||
<TD> | <TD>2015-02-13</TD><TD ALIGN=RIGHT>4.926%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 66]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ficAlb2 ficAlb2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ficedula_albicollis/FicAlb1.5/ Ficedula<BR>albicollis]</TD><TD>Collared flycatcher</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ | |||
<TD>Jun 2013 (FicAlb1.5/ficAlb2)</TD> | <TD>Jun 2013 (FicAlb1.5/ficAlb2)</TD> | ||
<TD>Uppsala University GCA_000247815.2</TD> | <TD>Uppsala University GCA_000247815.2</TD> | ||
<TD ALIGN=RIGHT>2013-06-29</TD> | <TD ALIGN=RIGHT>2013-06-29</TD> | ||
<TD ALIGN=RIGHT>2013-06-29</TD> | <TD ALIGN=RIGHT>2013-06-29</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>4.822%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 67]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=zonAlb1 zonAlb1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Zonotrichia_albicollis/ASM38545v1/ Zonotrichia<BR>albicollis]</TD><TD>White-throated sparrow</TD> | ||
<TD>Apr 2013 (ASM38545v1/zonAlb1)</TD> | <TD>Apr 2013 (ASM38545v1/zonAlb1)</TD> | ||
<TD>White-throated sparrow consortium GCA_000385455.1</TD> | <TD>White-throated sparrow consortium GCA_000385455.1</TD> | ||
<TD ALIGN=RIGHT>2013-06-26</TD> | <TD ALIGN=RIGHT>2013-06-26</TD> | ||
<TD ALIGN=RIGHT>2013-06-26</TD> | <TD ALIGN=RIGHT>2013-06-26</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>4.494%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/156703 | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/156703 68]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AKZB01 Geospiza<BR>fortis]</TD><TD>Medium ground finch</TD> | ||
<TD>Apr. 2012 (GeoFor_1.0/geoFor1)</TD> | <TD>Apr. 2012 (GeoFor_1.0/geoFor1)</TD> | ||
<TD>Beijing Genomics Institute</TD> | <TD>Beijing Genomics Institute</TD> | ||
<TD ALIGN=RIGHT>2012-07-26</TD> | <TD ALIGN=RIGHT>2012-07-26</TD> | ||
<TD ALIGN=RIGHT>2012-07-26</TD> | <TD ALIGN=RIGHT>2012-07-26</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>4.445%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000151805.2/ 69]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Taeniopygia_guttata/Taeniopygia_guttata-3.2.4/ Taeniopygia<BR>guttata]</TD><TD>Zebra finch</TD> | ||
<TD>Feb. 2013 (WashU taeGut324/taeGut2)</TD> | <TD>Feb. 2013 (WashU taeGut324/taeGut2)</TD> | ||
<TD>Washington University School of Medicine</TD> | <TD>Washington University School of Medicine</TD> | ||
<TD ALIGN=RIGHT>2013-06-05</TD> | <TD ALIGN=RIGHT>2013-06-05</TD> | ||
<TD ALIGN=RIGHT>2013-06-05</TD> | <TD ALIGN=RIGHT>2013-06-05</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>5.893%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 70]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pseHum1 pseHum1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pseudopodoces_humilis/PseHum1.0/ Pseudopodoces<BR>humilis]</TD><TD>Tibetan ground jay</TD> | |||
<TD>Jan 2013 (PseHum1.0/pseHum1)</TD> | |||
<TD>Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1</TD> | |||
<TD ALIGN=RIGHT>2013-06-27</TD> | |||
<TD ALIGN=RIGHT>2013-06-27</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>5.146%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/ | <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 71]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD> | ||
<TD>Dec 2011 ( | <TD>Sep. 2011 (WUSTL v6.3/melUnd1)</TD> | ||
<TD>Broad Institute of MIT and Harvard | <TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-27</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2012-03-28</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>4.474%</TD> | ||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000332375.1/ 72]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=amaVit1 amaVit1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Amazona_vittata/AV1/ Amazona<BR>vittata]</TD><TD>Parrot</TD> | |||
<TD>Jan. 2013 (AV1/amaVit1)</TD> | |||
<TD>Puerto Rican Parrot Genome Project AV1</TD> | |||
<TD ALIGN=RIGHT>2013-03-27</TD> | |||
<TD ALIGN=RIGHT>2013-03-27</TD> | |||
<TD>2015-02-13</TD><TD ALIGN=RIGHT>4.186%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 73]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=araMac1 araMac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Ara_macao/SMACv1.1/ Ara<BR>macao]</TD><TD>Scarlet Macaw</TD> | |||
<TD>Jun 2013 (SMACv1.1/araMac1)</TD> | |||
<TD>Texas A&M University GCA_000400695.1</TD> | |||
<TD ALIGN=RIGHT>2013-06-28</TD> | |||
<TD ALIGN=RIGHT>2013-06-28</TD> | |||
<TD>2015-02-17</TD><TD ALIGN=RIGHT>3.787%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 74]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anaPla1 anaPla1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anas_platyrhynchos/BGI_duck_1.0/ Anas<BR>platyrhynchos]</TD><TD>Mallard duck</TD> | |||
<TD>Apr 2013 (BGI_duck_1.0/anaPla1)</TD> | |||
<TD>State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1</TD> | |||
<TD ALIGN=RIGHT>2013-06-27</TD> | |||
<TD ALIGN=RIGHT>2013-06-27</TD> | |||
<TD>2015-02-13</TD><TD ALIGN=RIGHT>4.268%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/111 75]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD> | |||
<TD>Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)</TD> | |||
<TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD> | |||
<TD ALIGN=RIGHT>2012-01-04</TD> | |||
<TD ALIGN=RIGHT>2012-01-04</TD> | |||
<TD>2015-02-13</TD><TD ALIGN=RIGHT>4.696%</TD> | |||
</TR><TR> | |||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 76]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD> | |||
<TD>Dec. 2009 (TGC Turkey_2.01/melGal1)</TD> | |||
<TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD> | |||
<TD ALIGN=RIGHT>2010-11-04</TD> | |||
<TD ALIGN=RIGHT>2013-06-21</TD> | |||
<TD>2015-02-13</TD><TD ALIGN=RIGHT>4.328%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000281125.1/ 77]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Alligator_mississippiensis/allMis0.2/ Alligator<BR>mississippiensis]</TD><TD>American alligator</TD> | |||
<TD>Aug. 2012 (allMis0.2/allMis1)</TD> | |||
<TD>International Crocodilian Genomes Working Group</TD> | |||
<TD ALIGN=RIGHT>2013-06-07</TD> | |||
<TD ALIGN=RIGHT>2012-08-28</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>7.561%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 78]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cheMyd1 cheMyd1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Chelonia_mydas/CheMyd_1.0/ Chelonia<BR>mydas]</TD><TD>Green seaturtle</TD> | |||
<TD>Mar 2013 (CheMyd_1.0/cheMyd1)</TD> | |||
<TD>BGI GCA_000344595.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>6.296%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241765.2 79]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=chrPic2 chrPic2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AHGY02 Chrysemys<BR>picta<BR>bellii]</TD><TD>Painted turtle</TD> | |||
<TD>Mar. 2014 (v3.0.3/chrPic2)</TD> | |||
<TD>International Painted Turtle Genome Sequencing Consortium</TD> | |||
<TD ALIGN=RIGHT>2014-04-29</TD> | |||
<TD ALIGN=RIGHT>2014-04-10</TD> | |||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>6.708%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 80]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=pelSin1 pelSin1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pelodiscus_sinensis/PelSin_1.0/ Pelodiscus<BR>sinensis]</TD><TD>Chinese softshell turtle</TD> | |||
<TD>Oct 2011 (PelSin_1.0/pelSin1)</TD> | |||
<TD>Soft-shell Turtle Genome Consortium GCA_000230535.1</TD> | |||
<TD ALIGN=RIGHT>2013-07-01</TD> | |||
<TD ALIGN=RIGHT>2013-07-01</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>5.716%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 81]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=apaSpi1 apaSpi1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Apalone_spinifera/ASM38561v1/ Apalone<BR>spinifera]</TD><TD>Spiny softshell turtle</TD> | |||
<TD>May 2013 (ASM38561v1/apaSpi1)</TD> | |||
<TD>WUGSC GCA_000385615.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD ALIGN=RIGHT>2013-08-26</TD> | |||
<TD>2015-02-14</TD><TD ALIGN=RIGHT>4.611%</TD> | |||
</TR><TR> | |||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Anolis_carolinensis/ 82]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWZ00 Anolis<BR>carolinensis]</TD><TD>Lizard</TD> | |||
<TD>May 2010 (Broad AnoCar2.0/anoCar2)</TD> | |||
<TD>Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)</TD> | |||
<TD ALIGN=RIGHT>2011-04-12</TD> | |||
<TD ALIGN=RIGHT>2011-04-13</TD> | |||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>3.593%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004195.2/ 83]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xenopus_tropicalis/Xtropicalis_v7/ Xenopus<BR>tropicalis]</TD><TD>X. tropicalis</TD> | ||
<TD>Sep. 2012 (JGI 7.0/xenTro7)</TD> | <TD>Sep. 2012 (JGI 7.0/xenTro7)</TD> | ||
<TD>US DOE Joint Genome Institute (JGI-PGF)</TD> | <TD>US DOE Joint Genome Institute (JGI-PGF)</TD> | ||
<TD ALIGN=RIGHT>2013-06-21</TD> | <TD ALIGN=RIGHT>2013-06-21</TD> | ||
<TD ALIGN=RIGHT>2013-06-14</TD> | <TD ALIGN=RIGHT>2013-06-14</TD> | ||
<TD> | <TD>2015-02-19</TD><TD ALIGN=RIGHT>3.811%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/56111 84]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AFYH00 Latimeria<BR>chalumnae]</TD><TD>Coelacanth</TD> | ||
<TD>Aug. 2011 (Broad/latCha1)</TD> | <TD>Aug. 2011 (Broad/latCha1)</TD> | ||
<TD>Broad LatCha1 (GCA_000225785.1)</TD> | <TD>Broad LatCha1 (GCA_000225785.1)</TD> | ||
<TD ALIGN=RIGHT>2012-01-11</TD> | <TD ALIGN=RIGHT>2012-01-11</TD> | ||
<TD ALIGN=RIGHT>2012-01-12</TD> | <TD ALIGN=RIGHT>2012-01-12</TD> | ||
<TD> | <TD>2015-02-20</TD><TD ALIGN=RIGHT>2.873%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/ | <TH>[http://www.genoscope.cns.fr/spip/Tetraodon-nigroviridis-a-fish-with.html 85]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=tetNig2 tetNig2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAE01 Tetraodon<BR>nigroviridis]</TD><TD>Tetraodon</TD> | ||
<TD> | <TD>Mar. 2007 (Genoscope 8.0/tetNig2)</TD> | ||
<TD> | <TD>Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000)</TD> | ||
<TD ALIGN=RIGHT>2011- | <TD ALIGN=RIGHT>2010-06-07</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.743%</TD> | ||
</TR><TR> | |||
<TH>[http://www.fugu-sg.org/ 86]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAAB02 Takifugu<BR>rubripes]</TD><TD>Fugu</TD> | |||
<TD>Oct. 2011 (FUGU5/fr3)</TD> | |||
<TD>Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)</TD> | |||
<TD ALIGN=RIGHT>2011-11-16</TD> | |||
<TD ALIGN=RIGHT>2011-11-17</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>1.784%</TD> | |||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 87]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=takFla1 takFla1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Takifugu_flavidus/version_1_of_Takifugu_flavidus_genome/ Takifugu<BR>flavidus]</TD><TD>Yellowbelly pufferfish</TD> | ||
<TD> | <TD>May 2013 (version 1 of Takifugu flavidus genome/takFla1)</TD> | ||
<TD> | <TD>IOCAS GCA_000400755.1</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.548%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/59571 88]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile tilapia</TD> | <TH>[http://www.ncbi.nlm.nih.gov/bioproject/59571 88]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile tilapia</TD> | ||
| Line 639: | Line 639: | ||
<TD ALIGN=RIGHT>2012-04-10</TD> | <TD ALIGN=RIGHT>2012-04-10</TD> | ||
<TD ALIGN=RIGHT>2012-04-11</TD> | <TD ALIGN=RIGHT>2012-04-11</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.868%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 89]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=neoBri1 neoBri1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Neolamprologus_brichardi/NeoBri1.0/ Neolamprologus<BR>brichardi]</TD><TD>Princess of Burundi</TD> | ||
<TD>May 2011 (NeoBri1.0/neoBri1)</TD> | <TD>May 2011 (NeoBri1.0/neoBri1)</TD> | ||
<TD>Broad Institute of MIT and Harvard GCA_000239395.1</TD> | <TD>Broad Institute of MIT and Harvard GCA_000239395.1</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.767%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 90]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hapBur1 hapBur1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Haplochromis_burtoni/AstBur1.0/ Haplochromis<BR>burtoni]</TD><TD>Burton's mouthbreeder</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ | |||
<TD>Oct 2011 (AstBur1.0/hapBur1)</TD> | <TD>Oct 2011 (AstBur1.0/hapBur1)</TD> | ||
<TD>Broad Institute of MIT and Harvard GCA_000239415.1</TD> | <TD>Broad Institute of MIT and Harvard GCA_000239415.1</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD ALIGN=RIGHT>2013-08-28</TD> | <TD ALIGN=RIGHT>2013-08-28</TD> | ||
<TD> | <TD>2015-02-18</TD><TD ALIGN=RIGHT>1.783%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 91]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=mayZeb1 mayZeb1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Maylandia_zebra/MetZeb1.1/ Maylandia<BR>zebra]</TD><TD>Zebra Mbuna</TD> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ | |||
<TD>Mar 2012 (MetZeb1.1/mayZeb1)</TD> | <TD>Mar 2012 (MetZeb1.1/mayZeb1)</TD> | ||
<TD>Broad Institute GCA_000238955.2</TD> | <TD>Broad Institute GCA_000238955.2</TD> | ||
| Line 704: | Line 662: | ||
<TD>2015-02-07</TD><TD ALIGN=RIGHT>1.805%</TD> | <TD>2015-02-07</TD><TD ALIGN=RIGHT>1.805%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 92]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=punNye1 punNye1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Pundamilia_nyererei/PunNye1.0/ Pundamilia<BR>nyererei]</TD><TD>Pundamilia nyererei</TD> | ||
<TD>Oct 2011 (PunNye1.0/punNye1)</TD> | <TD>Oct 2011 (PunNye1.0/punNye1)</TD> | ||
<TD>Broad Institute of MIT and Harvard GCA_000239375.1</TD> | <TD>Broad Institute of MIT and Harvard GCA_000239375.1</TD> | ||
| Line 711: | Line 669: | ||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>1.787%</TD> | <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.787%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php | <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 93]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD> | ||
<TD>Oct. 2005 (NIG/UT MEDAKA1/oryLat2)</TD> | <TD>Oct. 2005 (NIG/UT MEDAKA1/oryLat2)</TD> | ||
<TD>NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)</TD> | <TD>NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)</TD> | ||
| Line 718: | Line 676: | ||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>2.002%</TD> | <TD>2015-02-06</TD><TD ALIGN=RIGHT>2.002%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ | <TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 94]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=xipMac1 xipMac1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Xiphophorus_maculatus/Xiphophorus_maculatus-4.4.2/ Xiphophorus<BR>maculatus]</TD><TD>Southern platyfish</TD> | ||
<TD>Jan 2012 (Xiphophorus_maculatus-4.4.2/xipMac1)</TD> | <TD>Jan 2012 (Xiphophorus_maculatus-4.4.2/xipMac1)</TD> | ||
<TD>Washington University School of Medicine GCA_000241075.1</TD> | <TD>Washington University School of Medicine GCA_000241075.1</TD> | ||
| Line 724: | Line 682: | ||
<TD ALIGN=RIGHT>2013-07-01</TD> | <TD ALIGN=RIGHT>2013-07-01</TD> | ||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD> | <TD>2015-02-06</TD><TD ALIGN=RIGHT>1.898%</TD> | ||
</TR><TR> | |||
<TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 95]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD> | |||
<TD>Feb. 2006 (Broad/gasAcu1)</TD> | |||
<TD>Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD ALIGN=RIGHT>2009-08-15</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>2.080%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/2661 96]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gadMor1 gadMor1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CAEA00 Gadus<BR>morhua]</TD><TD>Atlantic cod</TD> | |||
<TD>May 2010 (Genofisk GadMor_May2010/gadMor1)</TD> | |||
<TD>Genofisk GadMor_May2010 (GCA_000231765.1)</TD> | |||
<TD ALIGN=RIGHT>2011-12-29</TD> | |||
<TD ALIGN=RIGHT>2012-01-04</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>1.660%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCF_000002035.5 97]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ01 Danio<BR>rerio]</TD><TD>Zebrafish</TD> | |||
<TD>Sep. 2014 (GRCz10/danRer10)</TD> | |||
<TD>Genome Reference Consortium Zebrafish Build 10</TD> | |||
<TD ALIGN=RIGHT>2015-01-26</TD> | |||
<TD ALIGN=RIGHT>2015-01-22</TD> | |||
<TD>2015-02-08</TD><TD ALIGN=RIGHT>3.357%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 98]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=astMex1 astMex1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Astyanax_mexicanus/Astyanax_mexicanus-1.0.2/ Astyanax<BR>mexicanus]</TD><TD>Mexican tetra (cavefish)</TD> | |||
<TD>Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1)</TD> | |||
<TD>Aquatic Genome Models GCA_000372685.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>2015-02-18</TD><TD ALIGN=RIGHT>2.225%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 99]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=lepOcu1 lepOcu1]</TH><TD>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Lepisosteus_oculatus/LepOcu1/ Lepisosteus<BR>oculatus]</TD><TD>Spotted gar</TD> | |||
<TD>Dec 2011 (LepOcu1/lepOcu1)</TD> | |||
<TD>Broad Institute of MIT and Harvard GCA_000242695.1</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD ALIGN=RIGHT>2013-08-28</TD> | |||
<TD>2015-02-19</TD><TD ALIGN=RIGHT>2.511%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/bioproject/12880 100]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=petMar2 petMar2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEFG01 Petromyzon<BR>marinus]</TD><TD>Lamprey</TD> | |||
<TD>Sep. 2010 (WUGSC 7.0/petMar2)</TD> | |||
<TD>GSC Washington University School of Medicine</TD> | |||
<TD ALIGN=RIGHT>2012-10-12</TD> | |||
<TD ALIGN=RIGHT>2012-10-12</TD> | |||
<TD>2015-02-06</TD><TD ALIGN=RIGHT>1.265%</TD> | |||
</TR> | </TR> | ||
</TABLE> | </TABLE> | ||
Latest revision as of 19:55, 14 May 2015
see also
- Human 100-way Hg38 100-way Genome size statistics
- Human 100-way Hg38 100-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg38 |
% of hg38 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | 2015-01-14 | N/A |
| 02 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2014-05-27 | 93.112% |
| 03 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | 2013-06-21 | 2014-12-15 | 88.005% |
| 04 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | 2013-06-21 | 2014-09-02 | 89.187% |
| 05 | nomLeu3 | Nomascus leucogenys | Gibbon | Oct. 2012 (GGSC Nleu3.0/nomLeu3) | Gibbon Genome Sequencing Consortium | 2013-03-04 | 2013-03-01 | 2014-12-12 | 86.379% |
| 06 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2015-04-09 | 80.828% |
| 07 | macFas5 | Macaca fascicularis | Crab-eating macaque | Jun 2013 (Macaca_fascicularis_5.0/macFas5) | Washington University (WashU) GCA_000364345.1 | 2013-06-30 | 2013-06-30 | 2014-12-14 | 85.675% |
| 08 | papAnu2 | Papio anubis | Baboon | Mar. 2012 (Baylor Panu_2.0/papAnu2) | Baylor College of Medicine | 2012-07-22 | 2012-08-07 | 2014-12-13 | 84.179% |
| 09 | chlSab2 | Chlorocebus sabaeus | Green monkey | Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) | Vervet Genomics Consortium GCA_000409795.2 | 2014-04-10 | 2014-04-10 | 2014-07-11 | 84.393% |
| 10 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | 2013-06-21 | 2014-12-13 | 71.709% |
| 11 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (Broad/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2014-12-13 | 70.565% |
| 12 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2015-02-23 | 53.196% |
| 13 | tupChi1 | Tupaia chinensis | Chinese tree shrew | Jan 2013 (TupChi_1.0/tupChi1) | BGI GCA_000334495.1 | 2013-07-05 | 2013-07-05 | 2015-02-19 | 45.256% |
| 14 | speTri2 | Spermophilus tridecemlineatus | Squirrel | Nov. 2011 (Broad/speTri2) | Broad Institute (GCA_000236235.1) | 2012-03-14 | 2012-03-15 | 2015-04-29 | 48.283% |
| 15 | jacJac1 | Jaculus jaculus | Lesser Egyptian jerboa | May 2012 (JacJac1.0/jacJac1) | Broad Institute GCA_000280705.1 | 2013-07-15 | 2013-07-15 | 2015-02-19 | 34.153% |
| 16 | micOch1 | Microtus ochrogaster | Prairie vole | Oct 2012 (MicOch1.0/micOch1) | Broad Institute GCA_000317375.1 | 2013-08-26 | 2013-08-26 | 2015-02-14 | 31.489% |
| 17 | criGri1 | Cricetulus griseus | Chinese hamster | Jul. 2013 (C_griseus_v1.0/criGri1) | Beijing Genomics Institution-Shenzhen | 2014-04-04 | 2013-08-28 | 2015-02-20 | 33.169% |
| 18 | mesAur1 | Mesocricetus auratus | Golden hamster | Mar 2013 (MesAur1.0/mesAur1) | Broad Institute GCA_000349665.1 | 2013-08-28 | 2013-08-28 | 2015-02-19 | 30.803% |
| 19 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2015-04-09 | 31.653% |
| 20 | rn6 | Rattus norvegicus | Rat | Jul. 2014 (RGSC 6.0/rn6) | RGSC Rnor_6.0 | 2014-07-08 | 2014-07-09 | 2015-02-14 | 31.077% |
| 21 | hetGla2 | Heterocephalus glaber | Naked mole-rat | Jan. 2012 (Broad HetGla_female_1.0/hetGla2) | Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) | 2012-04-14 | 2012-04-14 | 2015-04-29 | 46.248% |
| 22 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2015-04-28 | 42.371% |
| 23 | chiLan1 | Chinchilla lanigera | Chinchilla | May 2012 (ChiLan1.0/chiLan1) | Broad Institute | 2012-07-28 | 2012-07-27 | 2015-04-28 | 45.665% |
| 24 | octDeg1 | Octodon degus | Brush-tailed rat | Apr 2012 (OctDeg1.0/octDeg1) | Broad Institute GCA_000260255.1 | 2013-07-07 | 2013-07-07 | 2015-04-24 | 40.238% |
| 25 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | 2013-06-21 | 2015-04-28 | 42.911% |
| 26 | ochPri3 | Ochotona princeps | Pika | May 2012 (OchPri3.0/ochPri3) | Broad Institute | 2013-06-20 | 2013-06-18 | 2015-04-28 | 33.618% |
| 27 | susScr3 | Sus scrofa | Pig | Aug. 2011 (SGSC Sscrofa10.2/susScr3) | SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) | 2012-04-12 | 2012-04-13 | 2015-04-29 | 44.676% |
| 28 | vicPac2 | Vicugna pacos | Alpaca | Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) | Broad Institute | 2013-06-10 | 2013-06-10 | 2015-04-29 | 48.909% |
| 29 | camFer1 | Camelus ferus | Bactrian camel | Dec 2011 (CB1/camFer1) | The Bactrian Camels Genome Sequencing and Analysis Consortium GCA_000311805.1 | 2013-07-12 | 2013-07-12 | 2015-04-24 | 49.095% |
| 30 | turTru2 | Tursiops truncatus | Dolphin | Oct. 2011 (Baylor Ttru_1.4/turTru2) | Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) | 2012-04-14 | 2012-04-14 | 2015-04-29 | 49.728% |
| 31 | orcOrc1 | Orcinus orca | Killer whale | Jan 2013 (Oorc_1.1/orcOrc1) | Marine mammals GCA_000331955.1 | 2013-08-20 | 2013-08-20 | 2015-04-29 | 50.709% |
| 32 | panHod1 | Pantholops hodgsonii | Tibetan antelope | May 2013 (PHO1.0/panHod1) | BGI GCA_000400835.1 | 2013-07-15 | 2013-07-15 | 2015-04-28 | 45.619% |
| 33 | bosTau8 | Bos taurus | Cow | Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) | University of Maryland Bos_taurus_UMD_3.1.1 | 2014-09-11 | 2014-09-12 | 2014-10-16 | 45.975% |
| 34 | oviAri3 | Ovis aries | Sheep | Aug. 2012 (ISGC Oar_v3.1/oviAri3) | International Sheep Genome Consortium | 2013-06-10 | 2013-06-09 | 2015-04-27 | 45.352% |
| 35 | capHir1 | Capra hircus | Domestic goat | May 2012 (CHIR_1.0/capHir1) | International Goat Genome Consortium GCA_000317765.1 | 2013-07-15 | 2013-07-15 | 2015-04-28 | 45.257% |
| 36 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | 2013-06-21 | 2015-02-23 | 55.459% |
| 37 | cerSim1 | Ceratotherium simum | White rhinoceros | May 2012 (CerSimSim1.0/cerSim1) | Broad Institute | 2012-08-28 | 2012-08-28 | 2015-02-23 | 56.633% |
| 38 | felCat8 | Felis catus | Cat | Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) | International Cat Genome Sequencing Consortium | 2014-11-22 | 2014-11-22 | 2015-04-29 | 51.684% |
| 39 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2015-04-10 | 50.395% |
| 40 | musFur1 | Mustela putorius furo | Ferret | Apr. 2011 (MusPutFur1.0/musFur1) | Ferret Genome Sequencing Consortium | 2013-03-05 | 2013-03-05 | 2015-04-29 | 49.631% |
| 41 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | 2013-06-21 | 2015-02-12 | 48.226% |
| 42 | odoRosDiv1 | Odobenus rosmarus divergens | Pacific walrus | Jan 2013 (Oros_1.0/odoRosDiv1) | Marine mammals GCA_000321225.1 | 2013-07-12 | 2013-07-12 | 2015-04-29 | 52.193% |
| 43 | lepWed1 | Leptonychotes weddellii | Weddell seal | Mar 2013 (LepWed1.0/lepWed1) | Broad Institute GCA_000349705.1 | 2013-07-11 | 2013-07-11 | 2015-04-29 | 51.073% |
| 44 | pteAle1 | Pteropus alecto | Black flying-fox | Aug 2012 (ASM32557v1/pteAle1) | BGI GCA_000325575.1 | 2013-08-28 | 2013-08-28 | 2015-04-29 | 48.281% |
| 45 | pteVam1 | Pteropus vampyrus | Megabat | Jul. 2008 (Broad/pteVam1) | Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) | 2009-09-02 | 2012-05-02 | 2015-04-29 | 43.924% |
| 46 | eptFus1 | Eptesicus fuscus | Big brown bat | Jul 2012 (EptFus1.0/eptFus1) | Broad Institute GCA_000308155.1 | 2013-08-28 | 2013-08-28 | 2015-04-24 | 39.123% |
| 47 | myoDav1 | Myotis davidii | David's myotis (bat) | Aug 2012 (ASM32734v1/myoDav1) | BGI GCA_000327345.1 | 2013-08-28 | 2013-08-28 | 2015-04-28 | 38.713% |
| 48 | myoLuc2 | Myotis lucifugus | Microbat | Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) | Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) | 2010-11-03 | 2013-06-21 | 2015-04-28 | 38.591% |
| 49 | eriEur2 | Erinaceus europaeus | Hedgehog | May 2012 (EriEur2.0/eriEur2) | Broad Institute EriEur2.0 | 2013-06-12 | 2013-06-07 | 2015-02-19 | 25.488% |
| 50 | sorAra2 | Sorex araneus | Shrew | Aug. 2008 (Broad/sorAra2) | Broad Institute SorAra2.0 | 2013-05-29 | 2013-05-29 | 2015-02-20 | 26.905% |
| 51 | conCri1 | Condylura cristata | Star-nosed mole | Mar 2012 (ConCri1.0/conCri1) | Broad Institute GCA_000260355.1 | 2013-07-09 | 2013-07-09 | 2015-04-29 | 35.911% |
| 52 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 (Broad/loxAfr3) | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-09-02 | 2013-06-21 | 2015-04-29 | 45.214% |
| 53 | eleEdw1 | Elephantulus edwardii | Cape elephant shrew | Aug 2012 (EleEdw1.0/eleEdw1) | Broad Institute GCA_000299155.1 | 2013-07-07 | 2013-07-07 | 2015-02-19 | 26.839% |
| 54 | triMan1 | Trichechus manatus latirostris | Manatee | Oct. 2011 (Broad v1.0/triMan1) | Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) | 2012-03-28 | 2012-03-29 | 2015-04-29 | 45.346% |
| 55 | chrAsi1 | Chrysochloris asiatica | Cape golden mole | Aug 2012 (ChrAsi1.0/chrAsi1) | Broad Institute GCA_000296735.1 | 2013-07-07 | 2013-07-07 | 2015-02-20 | 33.314% |
| 56 | echTel2 | Echinops telfairi | Tenrec | Nov. 2012 (Broad/echTel2) | Broad/EchTel2.0 | 2013-05-30 | 2013-05-30 | 2015-04-29 | 29.310% |
| 57 | oryAfe1 | Orycteropus afer afer | Aardvark | May 2012 (OryAfe1.0/oryAfe1) | Broad Institute GCA_000298275.1 | 2013-07-07 | 2013-07-07 | 2015-04-23 | 40.563% |
| 58 | dasNov3 | Dasypus novemcinctus | Armadillo | Dec. 2011 (Baylor/dasNov3) | Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) | 2012-04-12 | 2012-04-13 | 2015-04-29 | 45.349% |
| 59 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2014-05-29 | 14.370% |
| 60 | sarHar1 | Sarcophilus harrisii | Tasmanian devil | Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) | Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) | 2012-02-02 | 2012-02-08 | 2015-02-14 | 12.754% |
| 61 | macEug2 | Macropus eugenii | Wallaby | Sep. 2009 (TWGS Meug_1.1/macEug2) | TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) | 2010-11-05 | 2011-12-02 | 2015-02-19 | 6.378% |
| 62 | ornAna1 | Ornithorhynchus anatinus | Platypus | Mar. 2007 (WUGSC 5.0.1/ornAna1) | WUSTL version 5.0.1 | 2009-08-15 | 2013-06-22 | 2015-02-13 | 7.769% |
| 63 | colLiv1 | Columba livia | Rock pigeon | Feb 2013 (Cliv_1.0/colLiv1) | BGI GCA_000337935.1 | 2013-06-27 | 2013-06-27 | 2015-02-13 | 4.712% |
| 64 | falChe1 | Falco cherrug | Saker falcon | Feb 2013 (F_cherrug_v1.0/falChe1) | BGI GCA_000337975.1 | 2013-06-27 | 2013-06-27 | 2015-02-13 | 4.828% |
| 65 | falPer1 | Falco peregrinus | Peregrine falcon | Feb 2013 (F_peregrinus_v1.0/falPer1) | BGI GCA_000337955.1 | 2013-06-28 | 2013-06-28 | 2015-02-13 | 4.926% |
| 66 | ficAlb2 | Ficedula albicollis | Collared flycatcher | Jun 2013 (FicAlb1.5/ficAlb2) | Uppsala University GCA_000247815.2 | 2013-06-29 | 2013-06-29 | 2015-02-18 | 4.822% |
| 67 | zonAlb1 | Zonotrichia albicollis | White-throated sparrow | Apr 2013 (ASM38545v1/zonAlb1) | White-throated sparrow consortium GCA_000385455.1 | 2013-06-26 | 2013-06-26 | 2015-02-18 | 4.494% |
| 68 | geoFor1 | Geospiza fortis | Medium ground finch | Apr. 2012 (GeoFor_1.0/geoFor1) | Beijing Genomics Institute | 2012-07-26 | 2012-07-26 | 2015-02-19 | 4.445% |
| 69 | taeGut2 | Taeniopygia guttata | Zebra finch | Feb. 2013 (WashU taeGut324/taeGut2) | Washington University School of Medicine | 2013-06-05 | 2013-06-05 | 2015-02-19 | 5.893% |
| 70 | pseHum1 | Pseudopodoces humilis | Tibetan ground jay | Jan 2013 (PseHum1.0/pseHum1) | Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 | 2013-06-27 | 2013-06-27 | 2015-02-19 | 5.146% |
| 71 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | 2015-02-19 | 4.474% |
| 72 | amaVit1 | Amazona vittata | Parrot | Jan. 2013 (AV1/amaVit1) | Puerto Rican Parrot Genome Project AV1 | 2013-03-27 | 2013-03-27 | 2015-02-13 | 4.186% |
| 73 | araMac1 | Ara macao | Scarlet Macaw | Jun 2013 (SMACv1.1/araMac1) | Texas A&M University GCA_000400695.1 | 2013-06-28 | 2013-06-28 | 2015-02-17 | 3.787% |
| 74 | anaPla1 | Anas platyrhynchos | Mallard duck | Apr 2013 (BGI_duck_1.0/anaPla1) | State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1 | 2013-06-27 | 2013-06-27 | 2015-02-13 | 4.268% |
| 75 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2015-02-13 | 4.696% |
| 76 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | 2013-06-21 | 2015-02-13 | 4.328% |
| 77 | allMis1 | Alligator mississippiensis | American alligator | Aug. 2012 (allMis0.2/allMis1) | International Crocodilian Genomes Working Group | 2013-06-07 | 2012-08-28 | 2015-02-14 | 7.561% |
| 78 | cheMyd1 | Chelonia mydas | Green seaturtle | Mar 2013 (CheMyd_1.0/cheMyd1) | BGI GCA_000344595.1 | 2013-08-26 | 2013-08-26 | 2015-02-06 | 6.296% |
| 79 | chrPic2 | Chrysemys picta bellii | Painted turtle | Mar. 2014 (v3.0.3/chrPic2) | International Painted Turtle Genome Sequencing Consortium | 2014-04-29 | 2014-04-10 | 2015-02-06 | 6.708% |
| 80 | pelSin1 | Pelodiscus sinensis | Chinese softshell turtle | Oct 2011 (PelSin_1.0/pelSin1) | Soft-shell Turtle Genome Consortium GCA_000230535.1 | 2013-07-01 | 2013-07-01 | 2015-02-14 | 5.716% |
| 81 | apaSpi1 | Apalone spinifera | Spiny softshell turtle | May 2013 (ASM38561v1/apaSpi1) | WUGSC GCA_000385615.1 | 2013-08-26 | 2013-08-26 | 2015-02-14 | 4.611% |
| 82 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2015-02-06 | 3.593% |
| 83 | xenTro7 | Xenopus tropicalis | X. tropicalis | Sep. 2012 (JGI 7.0/xenTro7) | US DOE Joint Genome Institute (JGI-PGF) | 2013-06-21 | 2013-06-14 | 2015-02-19 | 3.811% |
| 84 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (Broad/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | 2015-02-20 | 2.873% |
| 85 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2015-02-18 | 1.743% |
| 86 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | 2015-02-18 | 1.784% |
| 87 | takFla1 | Takifugu flavidus | Yellowbelly pufferfish | May 2013 (version 1 of Takifugu flavidus genome/takFla1) | IOCAS GCA_000400755.1 | 2013-08-28 | 2013-08-28 | 2015-02-18 | 1.548% |
| 88 | oreNil2 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Broad oreNil1.1/oreNil2) | Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) | 2012-04-10 | 2012-04-11 | 2015-02-18 | 1.868% |
| 89 | neoBri1 | Neolamprologus brichardi | Princess of Burundi | May 2011 (NeoBri1.0/neoBri1) | Broad Institute of MIT and Harvard GCA_000239395.1 | 2013-08-28 | 2013-08-28 | 2015-02-18 | 1.767% |
| 90 | hapBur1 | Haplochromis burtoni | Burton's mouthbreeder | Oct 2011 (AstBur1.0/hapBur1) | Broad Institute of MIT and Harvard GCA_000239415.1 | 2013-08-28 | 2013-08-28 | 2015-02-18 | 1.783% |
| 91 | mayZeb1 | Maylandia zebra | Zebra Mbuna | Mar 2012 (MetZeb1.1/mayZeb1) | Broad Institute GCA_000238955.2 | 2013-08-28 | 2013-08-28 | 2015-02-07 | 1.805% |
| 92 | punNye1 | Pundamilia nyererei | Pundamilia nyererei | Oct 2011 (PunNye1.0/punNye1) | Broad Institute of MIT and Harvard GCA_000239375.1 | 2013-08-28 | 2013-08-28 | 2015-02-06 | 1.787% |
| 93 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2015-02-06 | 2.002% |
| 94 | xipMac1 | Xiphophorus maculatus | Southern platyfish | Jan 2012 (Xiphophorus_maculatus-4.4.2/xipMac1) | Washington University School of Medicine GCA_000241075.1 | 2013-07-01 | 2013-07-01 | 2015-02-06 | 1.898% |
| 95 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2015-02-18 | 2.080% |
| 96 | gadMor1 | Gadus morhua | Atlantic cod | May 2010 (Genofisk GadMor_May2010/gadMor1) | Genofisk GadMor_May2010 (GCA_000231765.1) | 2011-12-29 | 2012-01-04 | 2015-02-18 | 1.660% |
| 97 | danRer10 | Danio rerio | Zebrafish | Sep. 2014 (GRCz10/danRer10) | Genome Reference Consortium Zebrafish Build 10 | 2015-01-26 | 2015-01-22 | 2015-02-08 | 3.357% |
| 98 | astMex1 | Astyanax mexicanus | Mexican tetra (cavefish) | Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) | Aquatic Genome Models GCA_000372685.1 | 2013-08-28 | 2013-08-28 | 2015-02-18 | 2.225% |
| 99 | lepOcu1 | Lepisosteus oculatus | Spotted gar | Dec 2011 (LepOcu1/lepOcu1) | Broad Institute of MIT and Harvard GCA_000242695.1 | 2013-08-28 | 2013-08-28 | 2015-02-19 | 2.511% |
| 100 | petMar2 | Petromyzon marinus | Lamprey | Sep. 2010 (WUGSC 7.0/petMar2) | GSC Washington University School of Medicine | 2012-10-12 | 2012-10-12 | 2015-02-06 | 1.265% |
