Source tree compilation on Debian/Ubuntu: Difference between revisions
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<pre> | <pre> | ||
su | su | ||
aptitude install mysql-server-5.0 apache2 libmysqlclient15-dev | aptitude install mysql-server-5.0 apache2 libmysqlclient15-dev libpng12-dev | ||
# libmysqlclient.a does not contain SSL symbols, so use shared library | # libmysqlclient.a does not contain SSL symbols, so use shared library | ||
export MYSQLLIBS="-lmysqlclient -lz" | export MYSQLLIBS="-lmysqlclient -lz" | ||
Revision as of 00:07, 30 January 2011
This worked on my Debian Lenny machine (64 and 32 bit). It will put all binaries in /usr/local, all cgi-bins in /usr/lib/cgi-bin and all html-like things into /var/www/genome.
su aptitude install mysql-server-5.0 apache2 libmysqlclient15-dev libpng12-dev # libmysqlclient.a does not contain SSL symbols, so use shared library export MYSQLLIBS="-lmysqlclient -lz" export MACHTYPE=$(uname -m) export MYSQLINC=/usr/include/mysql DIRS='SCRIPTS=/usr/local/bin CGI_BIN=/usr/lib/cgi-bin DOCUMENTROOT=/var/www/genome BINDIR=/usr/local/bin ENCODE_PIPELINE_BIN=/usr/local/bin' # download cd /usr/local wget http://hgdownload.cse.ucsc.edu/admin/jksrc.zip unzip jksrc.zip mkdir -p /var/www/genome/ # compile libraries cd kent/src/lib make compile $DIRS cd ../jkOwnLib make compile $DIRS # compile browser cd ../hg make $DIRS # set permissions cd /home/data/www/hgw-max chown apache:apache -R *
