Fr3 conservation lastz parameters: Difference between revisions

Revision as of 22:25, 29 February 2012

query	abridged repeats(no)	M(0)	K(3000)	L(3000)	Q	Y(9400)	program run	E(30)	H(0)	O(400)	T(1)	chain table date	% of fr3 matched (chainLink table)	% of query matched (chainLinkFr3)
Tetraodon tetNig2	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2011-12-01	70.912%	80.674%
Nile tilapia oreNil1	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2011-12-02	57.240%	30.736%
Stickleback gasAcu1	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2011-12-02	55.527%	48.038%
Atlantic cod gadMor1	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2012-01-14	30.327%	19.051%
Medaka oryLat2	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2011-12-02	43.863%	25.905%
Zebrafish danRer7	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2011-12-02	22.823%	7.365%
Coelacanth latCha1	no	50	3000	3000	HoxD55.q	9400	lastz	30	2000	400	1	2012-01-13	13.735%	2.878%

@@ Line 70: / Line 70: @@
    <TD>2011-12-02</TD><TD ALIGN=RIGHT>55.527%</TD>
    <TD ALIGN=RIGHT>48.038%</TD></TR>
+<TR>
+  <TH>Atlantic cod&nbsp;gadMor1</TH>
+  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>HoxD55.q</TD>
+  <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
+  <TD>2012-01-14</TD><TD ALIGN=RIGHT>30.327%</TD>
+  <TD ALIGN=RIGHT>19.051%</TD></TR>
 <TR>
    <TH>Medaka&nbsp;oryLat2</TH>
@@ Line 82: / Line 88: @@
    <TD>2011-12-02</TD><TD ALIGN=RIGHT>22.823%</TD>
    <TD ALIGN=RIGHT>7.365%</TD></TR>
+<TR>
+  <TH>Coelacanth&nbsp;latCha1</TH>
+  <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>HoxD55.q</TD>
+  <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
+  <TD>2012-01-13</TD><TD ALIGN=RIGHT>13.735%</TD>
+  <TD ALIGN=RIGHT>2.878%</TD></TR>
 </TABLE>