Other genome browsers: Difference between revisions
From genomewiki
Jump to navigationJump to search
(→Other genome browsers: Reorganized page) |
m (→Animal Browsers: organizing/reordering) |
||
| Line 14: | Line 14: | ||
=== Animal Browsers === | === Animal Browsers === | ||
* [http://www.1000genomes.org 1000 Genomes] A Deep Catalog of Human Genetic Variation | * [http://www.1000genomes.org 1000 Genomes] A Deep Catalog of Human Genetic Variation | ||
| Line 26: | Line 22: | ||
* [http://www.jcvi.org/research/huref/ Craig Venter] genome data release | * [http://www.jcvi.org/research/huref/ Craig Venter] genome data release | ||
* [http://falcon.roswellpark.org:9090/cgi-bin/hgGateway?org=Human&db=hg17 dbRIP - Retroposon Insertions] Roswell Park Cancer Institute, MD | * [http://falcon.roswellpark.org:9090/cgi-bin/hgGateway?org=Human&db=hg17 dbRIP - Retroposon Insertions] Roswell Park Cancer Institute, MD | ||
| Line 33: | Line 27: | ||
* [http://pipeline.lbl.gov/cgi-bin/vistatrack?db=hg17&position=chr1:995532-995632 Vista] Lawrence Berkeley Lab, CA | * [http://pipeline.lbl.gov/cgi-bin/vistatrack?db=hg17&position=chr1:995532-995632 Vista] Lawrence Berkeley Lab, CA | ||
* [http:// | * [http://lgd.abcc.ncifcrf.gov/ GARFIELD] cat genome browser, Federick, MD | ||
* [http:// | * [http://panda.genomics.org.cn/page/panda/index.jsp Panda genome resources] | ||
* C. intestinalis: [http://genome.smith.man.ac.uk UCSC-based], [http://ghost.zool.kyoto-u.ac.jp/indexr1.html Gbrowse] | * C. intestinalis: [http://genome.smith.man.ac.uk UCSC-based], [http://ghost.zool.kyoto-u.ac.jp/indexr1.html Gbrowse] | ||
| Line 43: | Line 37: | ||
* [http://www.bio2rdf.org/ Bio2Rdf] Semantic web atlas of postgenomic knowledge about human and mouse | * [http://www.bio2rdf.org/ Bio2Rdf] Semantic web atlas of postgenomic knowledge about human and mouse | ||
* [http:// | * [http://aaegypti.vectorbase.org/Genome/Home/ Aedes aegypti] | ||
* [http://silkworm.genomics.org.cn/ Silkworm] Bombyx mori, China | |||
* [http://epigenome.wustl.edu/ Epigenomics] Epigenomics Roadmap mirror at Washington University, St. Louis. | * [http://epigenome.wustl.edu/ Epigenomics] Epigenomics Roadmap mirror at Washington University, St. Louis. | ||
* [http://eyebrowse.cit.nih.gov/index.html Eyebrowse] specializing in eye tissue sequences | |||
* [http://www.animalgenome.org/ NRSP-8] National Animal Genome Research Program - Bioinformatics Coordination Program | |||
=== Plant Browsers === | === Plant Browsers === | ||
Revision as of 20:12, 18 June 2012
UCSC Genome mirror sites
- Medical College of Wisconsin Milwaukee, WI
- Duke University Durham, NC
- Cornell University Ithaca, NY
- Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark
- Australia Queensland Facility for Advanced Bioinformatics (QFAB)
Non-UCSC Mirror Browsers
Animal Browsers
- 1000 Genomes A Deep Catalog of Human Genetic Variation
- NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
- Jim Watson genome browser at CSHL
- Craig Venter genome data release
- dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD
- Vista Lawrence Berkeley Lab, CA
- GARFIELD cat genome browser, Federick, MD
- C. intestinalis: UCSC-based, Gbrowse
- The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...
- Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
- Silkworm Bombyx mori, China
- Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis.
- Eyebrowse specializing in eye tissue sequences
- NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program
Plant Browsers
- Arabidopsis genome browser at UCLA
- Arabidopsis genome browser at Dartmouth.
- Arabidopsis Ensembl genome browser
- UNLV Las Vegas Genome Browser hosting D. melanogaster and several plant genomes: Arabidopsis, rice, sorghum and soybean.
- gramene.org many rice genomes and other grasses
- RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)
- Zea mays Maize Genome Sequencing Project
- Cannabis sativa Cannabis browser at U Toronto
Yeast Browsers
- S. pombe (fission yeast) at NCI, NIH
- Saccharomyces cerevisiae database and genome browser
Other
- Paramecium tetraurelia Genoscope, France
- JPGV Jena Prokaryotic Genome Browser
