GeoFor1 conservation alignment: Difference between revisions
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<TD>2012-07-31</TD><TD ALIGN=RIGHT>92.532%</TD> | <TD>2012-07-31</TD><TD ALIGN=RIGHT>92.532%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/genome/111 | <TH>[http://www.ncbi.nlm.nih.gov/genome/10765 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGAI01 Melopsittacus<BR>undulatus]</TD><TD>Budgerigar</TD> | ||
<TD>Sep. 2011 (WUSTL v6.3/melUnd1)</TD> | |||
<TD>WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)</TD> | |||
<TD ALIGN=RIGHT>2012-03-27</TD> | |||
<TD ALIGN=RIGHT>2012-03-28</TD> | |||
<TD>2012-07-29</TD><TD ALIGN=RIGHT>80.650%</TD> | |||
</TR><TR> | |||
<TH>[http://www.ncbi.nlm.nih.gov/genome/111 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AADN00 Gallus<BR>gallus]</TD><TD>Chicken</TD> | |||
<TD>Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)</TD> | <TD>Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)</TD> | ||
<TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD> | <TD>ICGSC Gallus_gallus-4.0 (GCA_000002315.2)</TD> | ||
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<TD>2012-07-30</TD><TD ALIGN=RIGHT>70.718%</TD> | <TD>2012-07-30</TD><TD ALIGN=RIGHT>70.718%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Meleagris_gallopavo/Turkey_2.01/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADDD00 Meleagris<BR>gallopavo]</TD><TD>Turkey</TD> | ||
<TD>Dec. 2009 (TGC Turkey_2.01/melGal1)</TD> | <TD>Dec. 2009 (TGC Turkey_2.01/melGal1)</TD> | ||
<TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD> | <TD>TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)</TD> | ||
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<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD>2012-07-29</TD><TD ALIGN=RIGHT>67.079%</TD> | <TD>2012-07-29</TD><TD ALIGN=RIGHT>67.079%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD> | <TH>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=hg19 hg19]</TH><TD>[http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml Homo<BR>sapiens]</TD><TD>Human</TD> | ||
Latest revision as of 23:27, 2 August 2012
see also
- Medium ground finch 7-way GeoFor1 Genome size statistics
- Medium ground finch 7-way GeoFor1 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on geoFor1 |
% of geoFor1 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | geoFor1 | Geospiza fortis | Medium ground finch | Apr. 2012 (GeoFor_1.0/geoFor1) | Beijing Genomics Institute | 2012-07-26 | 2012-07-26 | N/A | N/A |
| 02 | taeGut1 | Taeniopygia guttata | Zebra finch | Jul. 2008 (WUGSC 3.2.4/taeGut1) | Washington University taeGut1 | 2009-08-14 | 2009-08-14 | 2012-07-31 | 92.532% |
| 03 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | 2012-07-29 | 80.650% |
| 04 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2012-07-30 | 70.718% |
| 05 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | N/A | 2012-07-29 | 67.079% |
| 06 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | 2012-04-19 | 2012-07-29 | 8.504% |
| 07 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2012-07-29 | 7.709% |
