Hg19 100way Genome size statistics: Difference between revisions
From genomewiki
Jump to navigationJump to search
(initial contents) |
(fix reference to genome-preview database link) |
||
Line 83: | Line 83: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000409795.1/ 06]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000409795.1/ 06]</TH><TH ALIGN=RIGHT>chlSab1</TH> | ||
<TH ALIGN=RIGHT>2,004</TH> | <TH ALIGN=RIGHT>2,004</TH> | ||
<TD ALIGN=RIGHT>2,789,656,328</TD><TD ALIGN=RIGHT>2,752,000,999</TD> | <TD ALIGN=RIGHT>2,789,656,328</TD><TD ALIGN=RIGHT>2,752,000,999</TD> | ||
Line 92: | Line 92: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000364345.1/ 07]</TH><TH ALIGN=RIGHT>macFas5</TH> | ||
<TH ALIGN=RIGHT>7,601</TH> | <TH ALIGN=RIGHT>7,601</TH> | ||
<TD ALIGN=RIGHT>2,946,843,737</TD><TD ALIGN=RIGHT>2,803,866,385</TD> | <TD ALIGN=RIGHT>2,946,843,737</TD><TD ALIGN=RIGHT>2,803,866,385</TD> | ||
Line 146: | Line 146: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 13]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 13]</TH><TH ALIGN=RIGHT>tupChi1</TH> | ||
<TH ALIGN=RIGHT>50,750</TH> | <TH ALIGN=RIGHT>50,750</TH> | ||
<TD ALIGN=RIGHT>2,846,580,235</TD><TD ALIGN=RIGHT>2,706,389,135</TD> | <TD ALIGN=RIGHT>2,846,580,235</TD><TD ALIGN=RIGHT>2,706,389,135</TD> | ||
Line 173: | Line 173: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 16]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 16]</TH><TH ALIGN=RIGHT>camFer1</TH> | ||
<TH ALIGN=RIGHT>13,334</TH> | <TH ALIGN=RIGHT>13,334</TH> | ||
<TD ALIGN=RIGHT>2,009,194,609</TD><TD ALIGN=RIGHT>1,985,416,433</TD> | <TD ALIGN=RIGHT>2,009,194,609</TD><TD ALIGN=RIGHT>1,985,416,433</TD> | ||
Line 191: | Line 191: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 18]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.1/ 18]</TH><TH ALIGN=RIGHT>orcOrc1</TH> | ||
<TH ALIGN=RIGHT>1,668</TH> | <TH ALIGN=RIGHT>1,668</TH> | ||
<TD ALIGN=RIGHT>2,372,919,877</TD><TD ALIGN=RIGHT>2,249,582,112</TD> | <TD ALIGN=RIGHT>2,372,919,877</TD><TD ALIGN=RIGHT>2,249,582,112</TD> | ||
Line 218: | Line 218: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 21]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298275.1/ 21]</TH><TH ALIGN=RIGHT>oryAfe1</TH> | ||
<TH ALIGN=RIGHT>22,509</TH> | <TH ALIGN=RIGHT>22,509</TH> | ||
<TD ALIGN=RIGHT>4,444,080,527</TD><TD ALIGN=RIGHT>3,415,340,621</TD> | <TD ALIGN=RIGHT>4,444,080,527</TD><TD ALIGN=RIGHT>3,415,340,621</TD> | ||
Line 236: | Line 236: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 23]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 23]</TH><TH ALIGN=RIGHT>pteAle1</TH> | ||
<TH ALIGN=RIGHT>65,597</TH> | <TH ALIGN=RIGHT>65,597</TH> | ||
<TD ALIGN=RIGHT>1,985,958,707</TD><TD ALIGN=RIGHT>1,944,625,202</TD> | <TD ALIGN=RIGHT>1,985,958,707</TD><TD ALIGN=RIGHT>1,944,625,202</TD> | ||
Line 263: | Line 263: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 26]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260255.1/ 26]</TH><TH ALIGN=RIGHT>octDeg1</TH> | ||
<TH ALIGN=RIGHT>7,134</TH> | <TH ALIGN=RIGHT>7,134</TH> | ||
<TD ALIGN=RIGHT>2,995,882,938</TD><TD ALIGN=RIGHT>2,526,254,692</TD> | <TD ALIGN=RIGHT>2,995,882,938</TD><TD ALIGN=RIGHT>2,526,254,692</TD> | ||
Line 317: | Line 317: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 32]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 32]</TH><TH ALIGN=RIGHT>chrAsi1</TH> | ||
<TH ALIGN=RIGHT>20,500</TH> | <TH ALIGN=RIGHT>20,500</TH> | ||
<TD ALIGN=RIGHT>4,210,110,458</TD><TD ALIGN=RIGHT>3,363,564,316</TD> | <TD ALIGN=RIGHT>4,210,110,458</TD><TD ALIGN=RIGHT>3,363,564,316</TD> | ||
Line 344: | Line 344: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 35]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ 35]</TH><TH ALIGN=RIGHT>myoDav1</TH> | ||
<TH ALIGN=RIGHT>101,769</TH> | <TH ALIGN=RIGHT>101,769</TH> | ||
<TD ALIGN=RIGHT>2,059,799,708</TD><TD ALIGN=RIGHT>1,878,461,987</TD> | <TD ALIGN=RIGHT>2,059,799,708</TD><TD ALIGN=RIGHT>1,878,461,987</TD> | ||
Line 353: | Line 353: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 36]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400835.1/ 36]</TH><TH ALIGN=RIGHT>panHod1</TH> | ||
<TH ALIGN=RIGHT>15,059</TH> | <TH ALIGN=RIGHT>15,059</TH> | ||
<TD ALIGN=RIGHT>2,696,886,330</TD><TD ALIGN=RIGHT>2,507,986,438</TD> | <TD ALIGN=RIGHT>2,696,886,330</TD><TD ALIGN=RIGHT>2,507,986,438</TD> | ||
Line 362: | Line 362: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 37]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349705.1/ 37]</TH><TH ALIGN=RIGHT>lepWed1</TH> | ||
<TH ALIGN=RIGHT>16,711</TH> | <TH ALIGN=RIGHT>16,711</TH> | ||
<TD ALIGN=RIGHT>3,156,902,762</TD><TD ALIGN=RIGHT>2,223,164,129</TD> | <TD ALIGN=RIGHT>3,156,902,762</TD><TD ALIGN=RIGHT>2,223,164,129</TD> | ||
Line 371: | Line 371: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 38]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000321225.1/ 38]</TH><TH ALIGN=RIGHT>odoRosDiv1</TH> | ||
<TH ALIGN=RIGHT>3,892</TH> | <TH ALIGN=RIGHT>3,892</TH> | ||
<TD ALIGN=RIGHT>2,400,133,628</TD><TD ALIGN=RIGHT>2,300,235,509</TD> | <TD ALIGN=RIGHT>2,400,133,628</TD><TD ALIGN=RIGHT>2,300,235,509</TD> | ||
Line 389: | Line 389: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 40]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 40]</TH><TH ALIGN=RIGHT>eptFus1</TH> | ||
<TH ALIGN=RIGHT>6,788</TH> | <TH ALIGN=RIGHT>6,788</TH> | ||
<TD ALIGN=RIGHT>2,026,627,185</TD><TD ALIGN=RIGHT>1,811,378,799</TD> | <TD ALIGN=RIGHT>2,026,627,185</TD><TD ALIGN=RIGHT>1,811,378,799</TD> | ||
Line 407: | Line 407: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 42]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317765.1/ 42]</TH><TH ALIGN=RIGHT>capHir1</TH> | ||
<TH ALIGN=RIGHT>77,021</TH> | <TH ALIGN=RIGHT>77,021</TH> | ||
<TD ALIGN=RIGHT>2,635,848,900</TD><TD ALIGN=RIGHT>2,495,939,845</TD> | <TD ALIGN=RIGHT>2,635,848,900</TD><TD ALIGN=RIGHT>2,495,939,845</TD> | ||
Line 434: | Line 434: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 45]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ 45]</TH><TH ALIGN=RIGHT>eleEdw1</TH> | ||
<TH ALIGN=RIGHT>8,768</TH> | <TH ALIGN=RIGHT>8,768</TH> | ||
<TD ALIGN=RIGHT>3,843,982,861</TD><TD ALIGN=RIGHT>3,315,871,847</TD> | <TD ALIGN=RIGHT>3,843,982,861</TD><TD ALIGN=RIGHT>3,315,871,847</TD> | ||
Line 443: | Line 443: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 46]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000280705.1/ 46]</TH><TH ALIGN=RIGHT>jacJac1</TH> | ||
<TH ALIGN=RIGHT>10,896</TH> | <TH ALIGN=RIGHT>10,896</TH> | ||
<TD ALIGN=RIGHT>2,835,242,767</TD><TD ALIGN=RIGHT>2,470,259,869</TD> | <TD ALIGN=RIGHT>2,835,242,767</TD><TD ALIGN=RIGHT>2,470,259,869</TD> | ||
Line 470: | Line 470: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 49]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000260355.1/ 49]</TH><TH ALIGN=RIGHT>conCri1</TH> | ||
<TH ALIGN=RIGHT>2,038</TH> | <TH ALIGN=RIGHT>2,038</TH> | ||
<TD ALIGN=RIGHT>1,769,657,897</TD><TD ALIGN=RIGHT>1,682,542,007</TD> | <TD ALIGN=RIGHT>1,769,657,897</TD><TD ALIGN=RIGHT>1,682,542,007</TD> | ||
Line 524: | Line 524: | ||
<TD ALIGN=RIGHT>3000</TD> | <TD ALIGN=RIGHT>3000</TD> | ||
<TD ALIGN=CENTER>medium</TD></TR> | <TD ALIGN=CENTER>medium</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 55]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000419365.1/ 55]</TH><TH ALIGN=RIGHT>criGri1</TH> | ||
<TH ALIGN=RIGHT>52,711</TH> | <TH ALIGN=RIGHT>52,711</TH> | ||
<TD ALIGN=RIGHT>2,360,146,428</TD><TD ALIGN=RIGHT>2,301,325,917</TD> | <TD ALIGN=RIGHT>2,360,146,428</TD><TD ALIGN=RIGHT>2,301,325,917</TD> | ||
Line 533: | Line 533: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 56]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000349665.1/ 56]</TH><TH ALIGN=RIGHT>mesAur1</TH> | ||
<TH ALIGN=RIGHT>21,484</TH> | <TH ALIGN=RIGHT>21,484</TH> | ||
<TD ALIGN=RIGHT>2,504,925,039</TD><TD ALIGN=RIGHT>2,076,176,254</TD> | <TD ALIGN=RIGHT>2,504,925,039</TD><TD ALIGN=RIGHT>2,076,176,254</TD> | ||
Line 542: | Line 542: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 57]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ 57]</TH><TH ALIGN=RIGHT>micOch1</TH> | ||
<TH ALIGN=RIGHT>6,335</TH> | <TH ALIGN=RIGHT>6,335</TH> | ||
<TD ALIGN=RIGHT>2,287,340,943</TD><TD ALIGN=RIGHT>2,104,321,675</TD> | <TD ALIGN=RIGHT>2,287,340,943</TD><TD ALIGN=RIGHT>2,104,321,675</TD> | ||
Line 578: | Line 578: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 61]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000344595.1/ 61]</TH><TH ALIGN=RIGHT>cheMyd1</TH> | ||
<TH ALIGN=RIGHT>140,023</TH> | <TH ALIGN=RIGHT>140,023</TH> | ||
<TD ALIGN=RIGHT>2,208,410,377</TD><TD ALIGN=RIGHT>2,110,381,997</TD> | <TD ALIGN=RIGHT>2,208,410,377</TD><TD ALIGN=RIGHT>2,110,381,997</TD> | ||
Line 605: | Line 605: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 64]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385615.1/ 64]</TH><TH ALIGN=RIGHT>apaSpi1</TH> | ||
<TH ALIGN=RIGHT>286,620</TH> | <TH ALIGN=RIGHT>286,620</TH> | ||
<TD ALIGN=RIGHT>1,931,078,847</TD><TD ALIGN=RIGHT>1,877,982,184</TD> | <TD ALIGN=RIGHT>1,931,078,847</TD><TD ALIGN=RIGHT>1,877,982,184</TD> | ||
Line 614: | Line 614: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 65]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000230535.1/ 65]</TH><TH ALIGN=RIGHT>pelSin1</TH> | ||
<TH ALIGN=RIGHT>19,904</TH> | <TH ALIGN=RIGHT>19,904</TH> | ||
<TD ALIGN=RIGHT>2,202,483,752</TD><TD ALIGN=RIGHT>2,106,639,384</TD> | <TD ALIGN=RIGHT>2,202,483,752</TD><TD ALIGN=RIGHT>2,106,639,384</TD> | ||
Line 632: | Line 632: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 67]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337935.1/ 67]</TH><TH ALIGN=RIGHT>colLiv1</TH> | ||
<TH ALIGN=RIGHT>14,923</TH> | <TH ALIGN=RIGHT>14,923</TH> | ||
<TD ALIGN=RIGHT>1,107,989,085</TD><TD ALIGN=RIGHT>1,086,925,875</TD> | <TD ALIGN=RIGHT>1,107,989,085</TD><TD ALIGN=RIGHT>1,086,925,875</TD> | ||
Line 641: | Line 641: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 68]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ 68]</TH><TH ALIGN=RIGHT>falChe1</TH> | ||
<TH ALIGN=RIGHT>5,863</TH> | <TH ALIGN=RIGHT>5,863</TH> | ||
<TD ALIGN=RIGHT>1,174,811,715</TD><TD ALIGN=RIGHT>1,150,993,769</TD> | <TD ALIGN=RIGHT>1,174,811,715</TD><TD ALIGN=RIGHT>1,150,993,769</TD> | ||
Line 650: | Line 650: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 69]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337955.1/ 69]</TH><TH ALIGN=RIGHT>falPer1</TH> | ||
<TH ALIGN=RIGHT>7,021</TH> | <TH ALIGN=RIGHT>7,021</TH> | ||
<TD ALIGN=RIGHT>1,171,973,431</TD><TD ALIGN=RIGHT>1,153,404,348</TD> | <TD ALIGN=RIGHT>1,171,973,431</TD><TD ALIGN=RIGHT>1,153,404,348</TD> | ||
Line 668: | Line 668: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 71]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000355885.1/ 71]</TH><TH ALIGN=RIGHT>anaPla1</TH> | ||
<TH ALIGN=RIGHT>78,488</TH> | <TH ALIGN=RIGHT>78,488</TH> | ||
<TD ALIGN=RIGHT>1,105,052,351</TD><TD ALIGN=RIGHT>1,069,972,754</TD> | <TD ALIGN=RIGHT>1,105,052,351</TD><TD ALIGN=RIGHT>1,069,972,754</TD> | ||
Line 704: | Line 704: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 75]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400695.1/ 75]</TH><TH ALIGN=RIGHT>araMac1</TH> | ||
<TH ALIGN=RIGHT>192,790</TH> | <TH ALIGN=RIGHT>192,790</TH> | ||
<TD ALIGN=RIGHT>1,204,700,227</TD><TD ALIGN=RIGHT>997,522,769</TD> | <TD ALIGN=RIGHT>1,204,700,227</TD><TD ALIGN=RIGHT>997,522,769</TD> | ||
Line 722: | Line 722: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 77]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ 77]</TH><TH ALIGN=RIGHT>ficAlb2</TH> | ||
<TH ALIGN=RIGHT>21,428</TH> | <TH ALIGN=RIGHT>21,428</TH> | ||
<TD ALIGN=RIGHT>1,118,343,587</TD><TD ALIGN=RIGHT>1,102,323,882</TD> | <TD ALIGN=RIGHT>1,118,343,587</TD><TD ALIGN=RIGHT>1,102,323,882</TD> | ||
Line 749: | Line 749: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 80]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331425.1/ 80]</TH><TH ALIGN=RIGHT>pseHum1</TH> | ||
<TH ALIGN=RIGHT>5,406</TH> | <TH ALIGN=RIGHT>5,406</TH> | ||
<TD ALIGN=RIGHT>1,042,997,632</TD><TD ALIGN=RIGHT>1,030,030,436</TD> | <TD ALIGN=RIGHT>1,042,997,632</TD><TD ALIGN=RIGHT>1,030,030,436</TD> | ||
Line 767: | Line 767: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 82]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ 82]</TH><TH ALIGN=RIGHT>zonAlb1</TH> | ||
<TH ALIGN=RIGHT>6,018</TH> | <TH ALIGN=RIGHT>6,018</TH> | ||
<TD ALIGN=RIGHT>1,052,600,561</TD><TD ALIGN=RIGHT>1,006,293,510</TD> | <TD ALIGN=RIGHT>1,052,600,561</TD><TD ALIGN=RIGHT>1,006,293,510</TD> | ||
Line 776: | Line 776: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 83]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000242695.1/ 83]</TH><TH ALIGN=RIGHT>lepOcu1</TH> | ||
<TH ALIGN=RIGHT>1,925</TH> | <TH ALIGN=RIGHT>1,925</TH> | ||
<TD ALIGN=RIGHT>945,874,548</TD><TD ALIGN=RIGHT>869,414,359</TD> | <TD ALIGN=RIGHT>945,874,548</TD><TD ALIGN=RIGHT>869,414,359</TD> | ||
Line 812: | Line 812: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 87]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239395.1/ 87]</TH><TH ALIGN=RIGHT>neoBri1</TH> | ||
<TH ALIGN=RIGHT>9,083</TH> | <TH ALIGN=RIGHT>9,083</TH> | ||
<TD ALIGN=RIGHT>847,883,811</TD><TD ALIGN=RIGHT>685,897,279</TD> | <TD ALIGN=RIGHT>847,883,811</TD><TD ALIGN=RIGHT>685,897,279</TD> | ||
Line 848: | Line 848: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 91]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239415.1/ 91]</TH><TH ALIGN=RIGHT>hapBur1</TH> | ||
<TH ALIGN=RIGHT>7,994</TH> | <TH ALIGN=RIGHT>7,994</TH> | ||
<TD ALIGN=RIGHT>831,398,301</TD><TD ALIGN=RIGHT>698,936,397</TD> | <TD ALIGN=RIGHT>831,398,301</TD><TD ALIGN=RIGHT>698,936,397</TD> | ||
Line 857: | Line 857: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 92]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000400755.1/ 92]</TH><TH ALIGN=RIGHT>takFla1</TH> | ||
<TH ALIGN=RIGHT>34,223</TH> | <TH ALIGN=RIGHT>34,223</TH> | ||
<TD ALIGN=RIGHT>377,992,166</TD><TD ALIGN=RIGHT>314,409,984</TD> | <TD ALIGN=RIGHT>377,992,166</TD><TD ALIGN=RIGHT>314,409,984</TD> | ||
Line 866: | Line 866: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 93]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ 93]</TH><TH ALIGN=RIGHT>mayZeb1</TH> | ||
<TH ALIGN=RIGHT>3,725</TH> | <TH ALIGN=RIGHT>3,725</TH> | ||
<TD ALIGN=RIGHT>849,595,388</TD><TD ALIGN=RIGHT>713,527,863</TD> | <TD ALIGN=RIGHT>849,595,388</TD><TD ALIGN=RIGHT>713,527,863</TD> | ||
Line 875: | Line 875: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 94]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000239375.1/ 94]</TH><TH ALIGN=RIGHT>punNye1</TH> | ||
<TH ALIGN=RIGHT>7,233</TH> | <TH ALIGN=RIGHT>7,233</TH> | ||
<TD ALIGN=RIGHT>830,129,318</TD><TD ALIGN=RIGHT>698,757,151</TD> | <TD ALIGN=RIGHT>830,129,318</TD><TD ALIGN=RIGHT>698,757,151</TD> | ||
Line 893: | Line 893: | ||
<TD ALIGN=RIGHT>1000</TD> | <TD ALIGN=RIGHT>1000</TD> | ||
<TD ALIGN=CENTER>N/A</TD></TR> | <TD ALIGN=CENTER>N/A</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 96]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000372685.1/ 96]</TH><TH ALIGN=RIGHT>astMex1</TH> | ||
<TH ALIGN=RIGHT>10,736</TH> | <TH ALIGN=RIGHT>10,736</TH> | ||
<TD ALIGN=RIGHT>1,191,259,254</TD><TD ALIGN=RIGHT>964,251,514</TD> | <TD ALIGN=RIGHT>1,191,259,254</TD><TD ALIGN=RIGHT>964,251,514</TD> | ||
Line 920: | Line 920: | ||
<TD ALIGN=RIGHT>5000</TD> | <TD ALIGN=RIGHT>5000</TD> | ||
<TD ALIGN=CENTER>loose</TD></TR> | <TD ALIGN=CENTER>loose</TD></TR> | ||
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 99]</TH><TH ALIGN=RIGHT> | <TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000241075.1/ 99]</TH><TH ALIGN=RIGHT>xipMac1</TH> | ||
<TH ALIGN=RIGHT>20,632</TH> | <TH ALIGN=RIGHT>20,632</TH> | ||
<TD ALIGN=RIGHT>729,664,433</TD><TD ALIGN=RIGHT>652,811,251</TD> | <TD ALIGN=RIGHT>729,664,433</TD><TD ALIGN=RIGHT>652,811,251</TD> |
Revision as of 18:23, 17 July 2013
see also
- Human 100-way Hg19 100way conservation alignment
- Human 100-way Hg19 100way conservation lastz parameters
- all other UCSC Multiple Alignments
statistics collected from UCSC 2bit files
- The external link in the first column goes to the FTP location where the genome sequence was obtained
- The external links from the UCSC database name go to the UCSC genome-test browser for that genome
- N bases == unknown bases in the assembly marked by "N"
- non-N bases == called bases in the assembly
- total size == all bases in assembly, N and non-N
- The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
- The common name external links go to information pages for this genome
- The coverage numbers are taken directly from information README files from the sequencing center
- The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
do not edit, automatically generated table
order count/ ftp src |
ucsc db name/ genome-test |
chrom count |
total size |
non-N bases |
N base count |
% masked | common name/ src info |
coverage | N50 chrom.sizes |
alignment type | % of hg19 matched (chainLink table) |
chain minScore |
chain linearGap |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | hg19 | 93 | 3,137,161,264 | 2,897,310,462 | 239,850,802 | % 50.63 | Human | 20X | 146364022 | N/A | N/A | N/A | N/A |
02 | panTro4 | 24,129 | 3,309,577,922 | 2,902,338,967 | 407,238,955 | % 51.29 | Chimp | 6X | 143986469 | RecipBest | 95.279% | 5000 | medium |
03 | gorGor3 | 46,823 | 3,029,553,646 | 2,822,760,080 | 206,793,566 | % 48.80 | Gorilla | 2.1X | 145327772 | SyntenicNet | 89.876% | 5000 | medium |
04 | ponAbe2 | 55 | 3,446,771,396 | 3,093,543,172 | 353,228,224 | % 50.89 | Orangutan | 6X | 135191526 | SyntenicNet | 91.350% | 5000 | medium |
05 | nomLeu3 | 17,492 | 2,962,077,449 | 2,756,609,047 | 205,468,402 | % 51.14 | Gibbon | 117381234 | SyntenicNet | 87.764% | 5000 | medium | |
06 | chlSab1 | 2,004 | 2,789,656,328 | 2,752,000,999 | 37,655,329 | % 48.77 | Chlorocebus sabaeus | 101219884 | RecipBest | 86.446% | 5000 | medium | |
07 | macFas5 | 7,601 | 2,946,843,737 | 2,803,866,385 | 142,977,352 | % 50.11 | Macaca fascicularis | 152835861 | RecipBest | 86.666% | 5000 | medium | |
08 | rheMac3 | 34,103 | 2,969,988,180 | 2,639,145,830 | 330,842,350 | % 48.54 | Rhesus | 50X | 150158102 | SyntenicNet | 82.859% | 5000 | medium |
09 | papHam1 | 387,374 | 2,867,564,654 | 2,741,849,051 | 125,715,603 | % 48.70 | Baboon | 5.3X | 88525 | RecipBest | 82.810% | 5000 | medium |
10 | saiBol1 | 2,685 | 2,608,572,064 | 2,477,131,095 | 131,440,969 | % 46.69 | Squirrel monkey | 80X | 18744880 | RecipBest | 69.598% | 5000 | medium |
11 | calJac3 | 14,205 | 2,914,958,544 | 2,752,505,800 | 162,452,744 | % 47.71 | Marmoset | 6X | 132174527 | SyntenicNet | 70.654% | 5000 | medium |
12 | otoGar3 | 7,793 | 2,519,724,550 | 2,359,530,453 | 160,194,097 | % 39.51 | Bushbaby | 137X | 13852661 | RecipBest | 54.830% | 3000 | medium |
13 | tupChi1 | 50,750 | 2,846,580,235 | 2,706,389,135 | 140,191,100 | % 40.02 | Tupaia chinensis | 3670124 | RecipBest | 46.558% | 3000 | medium | |
14 | cerSim1 | 3,087 | 2,464,367,180 | 2,366,858,012 | 97,509,168 | % 38.80 | White rhinoceros | 26277727 | Net | 58.103% | 3000 | medium | |
15 | equCab2 | 34 | 2,484,532,062 | 2,428,790,173 | 55,741,889 | % 40.97 | Horse | 6.8X | 91571448 | SyntenicNet | 57.050% | 3000 | medium |
16 | camFer1 | 13,334 | 2,009,194,609 | 1,985,416,433 | 23,778,176 | % 33.32 | Camelus ferus | 2005940 | RecipBest | 50.419% | 3000 | medium | |
17 | vicPac2 | 276,611 | 2,172,177,994 | 2,078,582,856 | 93,595,138 | % 35.40 | Alpaca | 7263804 | RecipBest | 50.193% | 3000 | medium | |
18 | orcOrc1 | 1,668 | 2,372,919,877 | 2,249,582,112 | 123,337,765 | % 42.47 | Orcinus orca | 12735091 | N/A | N/A | 1000 | N/A | |
19 | turTru2 | 240,901 | 2,551,996,573 | 2,332,402,443 | 219,594,130 | % 43.56 | Dolphin | 3.5X | 116261 | N/A | N/A | 1000 | N/A |
20 | musFur1 | 7,741 | 2,410,758,013 | 2,277,906,570 | 132,851,443 | % 38.98 | Ferret | 9335154 | RecipBest | 50.993% | 3000 | medium | |
21 | oryAfe1 | 22,509 | 4,444,080,527 | 3,415,340,621 | 1,028,739,906 | % 31.09 | Orycteropus afer | 7875832 | RecipBest | 41.668% | 3000 | medium | |
22 | speTri2 | 12,483 | 2,478,393,770 | 2,311,060,300 | 167,333,470 | % 36.27 | Squirrel | 495X | 8192786 | N/A | N/A | 1000 | N/A |
23 | pteAle1 | 65,597 | 1,985,958,707 | 1,944,625,202 | 41,333,505 | % 32.56 | Pteropus alecto | 15954802 | N/A | N/A | 1000 | N/A | |
24 | susScr3 | 4,583 | 2,808,525,991 | 2,518,987,191 | 289,538,800 | % 44.30 | Pig | 24X | 148491826 | N/A | N/A | 1000 | N/A |
25 | triMan1 | 6,323 | 3,103,808,406 | 2,769,099,677 | 334,708,729 | % 36.24 | Manatee | 150X | 14442683 | RecipBest | 46.580% | 3000 | medium |
26 | octDeg1 | 7,134 | 2,995,882,938 | 2,526,254,692 | 469,628,246 | % 26.47 | Octodon degus | 12091372 | RecipBest | 41.385% | 3000 | medium | |
27 | pteVam1 | 96,944 | 1,996,076,410 | 1,839,436,660 | 156,639,750 | % 31.75 | Megabat | 2X | 124060 | RecipBest | 45.414% | 3000 | medium |
28 | loxAfr3 | 2,353 | 3,196,760,833 | 3,118,565,340 | 78,195,493 | % 47.63 | Elephant | 7X | 46401353 | SyntenicNet | 46.636% | 3000 | medium |
29 | felCat5 | 5,500 | 2,455,541,136 | 2,364,296,207 | 91,244,929 | % 43.24 | Cat | 12X | 148491654 | RecipBest | 52.426% | 3000 | medium |
30 | ailMel1 | 81,467 | 2,299,509,015 | 2,245,312,831 | 54,196,184 | % 38.96 | Panda | 73X | 1281781 | SyntenicNet | 50.022% | 3000 | medium |
31 | canFam3 | 3,268 | 2,410,976,875 | 2,392,715,236 | 18,261,639 | % 43.01 | Dog | 7.6X | 63241923 | SyntenicNet | 51.848% | 3000 | medium |
32 | chrAsi1 | 20,500 | 4,210,110,458 | 3,363,564,316 | 846,546,142 | % 20.11 | Chrysochloris asiatica | 13470186 | RecipBest | 34.209% | 3000 | medium | |
33 | dasNov3 | 46,559 | 3,631,522,711 | 3,299,882,028 | 331,640,683 | % 49.28 | Armadillo | 6X | 1687935 | RecipBest | 46.571% | 3000 | medium |
34 | oryCun2 | 3,242 | 2,737,490,501 | 2,604,023,284 | 133,467,217 | % 43.74 | Rabbit | 6.51X | 111795807 | SyntenicNet | 44.317% | 3000 | medium |
35 | myoDav1 | 101,769 | 2,059,799,708 | 1,878,461,987 | 181,337,721 | % 23.35 | Myotis Davidii | 3454484 | N/A | N/A | 1000 | N/A | |
36 | panHod1 | 15,059 | 2,696,886,330 | 2,507,986,438 | 188,899,892 | % 42.51 | Pantholops hodgsonii | 2772860 | SyntenicNet | 46.863% | 3000 | medium | |
37 | lepWed1 | 16,711 | 3,156,902,762 | 2,223,164,129 | 933,738,633 | % 40.09 | Leptonychotes weddellii | 904031 | RecipBest | 52.424% | 3000 | medium | |
38 | odoRosDiv1 | 3,892 | 2,400,133,628 | 2,300,235,509 | 99,898,119 | % 40.52 | Odobenus rosmarus divergens | 2616778 | RecipBest | 53.559% | 3000 | medium | |
39 | myoLuc2 | 11,654 | 2,034,575,300 | 1,966,419,868 | 68,155,432 | % 33.71 | Microbat | 2.18X | 4293315 | N/A | N/A | 1000 | N/A |
40 | eptFus1 | 6,788 | 2,026,627,185 | 1,811,378,799 | 215,248,386 | % 24.11 | Eptesicus fuscus | 13454942 | N/A | N/A | 1000 | N/A | |
41 | bosTau7 | 11,692 | 2,981,119,579 | 2,804,673,174 | 176,446,405 | % 49.56 | Cow | 7.1X | 85119472 | SyntenicNet | 46.971% | 3000 | medium |
42 | capHir1 | 77,021 | 2,635,848,900 | 2,495,939,845 | 139,909,055 | % 43.55 | Capra hircus | 92306894 | SyntenicNet | 46.498% | 3000 | medium | |
43 | oviAri3 | 5,698 | 2,619,054,388 | 2,534,335,866 | 84,718,522 | % 45.18 | Sheep | 100079507 | RecipBest | 46.833% | 3000 | medium | |
44 | hetGla2 | 4,229 | 2,618,204,639 | 2,314,771,103 | 303,433,536 | % 32.31 | Naked mole-rat | 90X | 20532749 | SyntenicNet | 47.600% | 3000 | medium |
45 | eleEdw1 | 8,768 | 3,843,982,861 | 3,315,871,847 | 528,111,014 | % 49.11 | Elephantulus edwardii | 15011382 | RecipBest | 27.675% | 3000 | medium | |
46 | jacJac1 | 10,896 | 2,835,242,767 | 2,470,259,869 | 364,982,898 | % 37.29 | Jaculus jaculus | 22080993 | RecipBest | 35.106% | 3000 | medium | |
47 | chiLan1 | 2,838 | 2,390,852,391 | 2,284,276,400 | 106,575,991 | % 30.82 | Chinchilla | 21893125 | N/A | N/A | 1000 | N/A | |
48 | cavPor3 | 3,144 | 2,723,219,641 | 2,663,369,733 | 59,849,908 | % 27.53 | Guinea pig | 6.76X | 27942054 | SyntenicNet | 43.680% | 3000 | medium |
49 | conCri1 | 2,038 | 1,769,657,897 | 1,682,542,007 | 87,115,890 | % 18.21 | Condylura cristata | 55520359 | RecipBest | 37.034% | 3000 | medium | |
50 | ochPri3 | 10,420 | 2,229,835,716 | 1,943,987,870 | 285,847,846 | % 29.53 | Pika | 26863993 | RecipBest | 34.676% | 3000 | medium | |
51 | eriEur2 | 5,803 | 2,715,720,925 | 2,333,073,535 | 382,647,390 | % 45.60 | Hedgehog | 3264618 | RecipBest | 26.149% | 3000 | medium | |
52 | echTel2 | 8,402 | 2,947,024,286 | 2,605,196,361 | 341,827,925 | % 28.26 | Tenrec | 45764842 | RecipBest | 30.135% | 3000 | medium | |
53 | mm10 | 66 | 2,730,871,774 | 2,652,783,500 | 78,088,274 | % 45.18 | Mouse | 20X | 130694993 | RecipBest | 35.249% | 3000 | medium |
54 | rn5 | 2,739 | 2,909,698,938 | 2,572,853,723 | 336,845,215 | % 42.81 | Rat | 6X | 154597545 | SyntenicNet | 31.662% | 3000 | medium |
55 | criGri1 | 52,711 | 2,360,146,428 | 2,301,325,917 | 58,820,511 | % 26.43 | Cricetulus griseus | 1558295 | N/A | N/A | 1000 | N/A | |
56 | mesAur1 | 21,484 | 2,504,925,039 | 2,076,176,254 | 428,748,785 | % 25.70 | Mesocricetus auratus | 12753307 | N/A | N/A | 1000 | N/A | |
57 | micOch1 | 6,335 | 2,287,340,943 | 2,104,321,675 | 183,019,268 | % 23.89 | Microtus ochrogaster | 61813736 | N/A | N/A | 1000 | N/A | |
58 | sorAra2 | 12,845 | 2,423,158,183 | 2,192,103,426 | 231,054,757 | % 32.76 | Shrew | 22794405 | RecipBest | 27.681% | 3000 | medium | |
59 | macEug2 | 277,711 | 3,075,184,024 | 2,536,076,954 | 539,107,070 | % 47.39 | Wallaby | 2X | 36602 | RecipBest | 6.534% | 5000 | loose |
60 | monDom5 | 11 | 3,605,631,728 | 3,501,660,299 | 103,971,429 | % 55.95 | Opossum | 6.8X | 527952102 | SyntenicNet | 14.358% | 5000 | loose |
61 | cheMyd1 | 140,023 | 2,208,410,377 | 2,110,381,997 | 98,028,380 | % 29.65 | Chelonia mydas | 3864108 | N/A | N/A | 1000 | N/A | |
62 | sarHar1 | 35,974 | 3,174,693,010 | 2,931,539,702 | 243,153,308 | % 39.66 | Tasmanian devil | 85X | 1847106 | RecipBest | 7.414% | 5000 | loose |
63 | chrPic1 | 80,984 | 2,589,745,704 | 2,158,289,746 | 431,455,958 | % 31.20 | Painted turtle | 15X | 5212367 | N/A | N/A | 1000 | N/A |
64 | apaSpi1 | 286,620 | 1,931,078,847 | 1,877,982,184 | 53,096,663 | % 29.87 | Apalone spinifera | 2306994 | N/A | N/A | 1000 | N/A | |
65 | pelSin1 | 19,904 | 2,202,483,752 | 2,106,639,384 | 95,844,368 | % 33.82 | Pelodiscus sinensis | 3350749 | N/A | N/A | 1000 | N/A | |
66 | ornAna1 | 201,523 | 1,996,811,212 | 1,842,235,522 | 154,575,690 | % 47.89 | Platypus | 6X | 991605 | RecipBest | 7.627% | 5000 | loose |
67 | colLiv1 | 14,923 | 1,107,989,085 | 1,086,925,875 | 21,063,210 | % 19.83 | Columba livia | 3148738 | RecipBest | 3.683% | 5000 | loose | |
68 | falChe1 | 5,863 | 1,174,811,715 | 1,150,993,769 | 23,817,946 | % 18.62 | Falco cherrug | 4154532 | RecipBest | 3.812% | 5000 | loose | |
69 | falPer1 | 7,021 | 1,171,973,431 | 1,153,404,348 | 18,569,083 | % 18.69 | Falco peregrinus | 3935757 | RecipBest | 3.879% | 5000 | loose | |
70 | allMis1 | 14,645 | 2,174,259,888 | 2,128,720,123 | 45,539,765 | % 37.18 | American alligator | 508966 | RecipBest | 7.084% | 5000 | loose | |
71 | anaPla1 | 78,488 | 1,105,052,351 | 1,069,972,754 | 35,079,597 | % 20.21 | Anas platyrhynchos | 1233631 | RecipBest | 3.509% | 5000 | loose | |
72 | galGal4 | 15,932 | 1,046,932,099 | 1,032,854,810 | 14,077,289 | % 20.41 | Chicken | 12X | 90216835 | RecipBest | 3.684% | 5000 | loose |
73 | melGal1 | 5,891 | 1,061,817,101 | 935,922,386 | 125,894,715 | % 6.60 | Turkey | 5X | 74864452 | SyntenicNet | 2.645% | 5000 | loose |
74 | amaVit1 | 182,974 | 1,175,404,042 | 1,128,255,752 | 47,148,290 | % 18.36 | Parrot | 19239 | RecipBest | 3.298% | 5000 | loose | |
75 | araMac1 | 192,790 | 1,204,700,227 | 997,522,769 | 207,177,458 | % 16.49 | Ara macao | 15974 | RecipBest | 2.912% | 5000 | loose | |
76 | melUnd1 | 25,212 | 1,117,373,619 | 1,086,614,815 | 30,758,804 | % 19.62 | Budgerigar | 7X | 10614383 | RecipBest | 3.577% | 5000 | loose |
77 | ficAlb2 | 21,428 | 1,118,343,587 | 1,102,323,882 | 16,019,705 | % 24.04 | Ficedula albicollis | 64724594 | RecipBest | 3.715% | 5000 | loose | |
78 | anoCar2 | 6,457 | 1,799,143,587 | 1,701,353,767 | 97,789,820 | % 41.98 | Lizard | 7.1X | 150641573 | SyntenicNet | 3.552% | 5000 | loose |
79 | taeGut2 | 37,096 | 1,232,135,591 | 1,222,864,691 | 9,270,900 | % 8.11 | Zebra finch | 62374962 | RecipBest | 5.321% | 5000 | loose | |
80 | pseHum1 | 5,406 | 1,042,997,632 | 1,030,030,436 | 12,967,196 | % 20.21 | Pseudopodoces humilis | 16337386 | RecipBest | 3.982% | 5000 | loose | |
81 | geoFor1 | 27,239 | 1,065,292,181 | 1,041,286,029 | 24,006,152 | % 19.99 | Medium ground finch | 115X | 5255844 | Net | 3.503% | 5000 | loose |
82 | zonAlb1 | 6,018 | 1,052,600,561 | 1,006,293,510 | 46,307,051 | % 20.03 | Zonotrichia albicollis | 4866725 | RecipBest | 3.476% | 5000 | loose | |
83 | lepOcu1 | 1,925 | 945,874,548 | 869,414,359 | 76,460,189 | % 24.85 | Lepisosteus oculatus | 50348508 | N/A | N/A | 1000 | N/A | |
84 | xenTro7 | 7,728 | 1,437,530,879 | 1,365,936,747 | 71,594,132 | % 33.98 | X. tropicalis | 124127367 | N/A | N/A | 1000 | N/A | |
85 | latCha1 | 22,819 | 2,860,591,921 | 2,183,592,768 | 676,999,153 | % 45.68 | Coelacanth | 77.5X | 924513 | RecipBest | 2.749% | 5000 | loose |
86 | gadMor1 | 427,428 | 824,327,835 | 608,038,555 | 216,289,280 | % 31.25 | Atlantic cod | 40X | 393166 | N/A | N/A | 1000 | N/A |
87 | neoBri1 | 9,083 | 847,883,811 | 685,897,279 | 161,986,532 | % 24.12 | Neolamprologus brichardi | 4430025 | N/A | N/A | 1000 | N/A | |
88 | oreNil2 | 5,678 | 927,696,114 | 816,084,674 | 111,611,440 | % 25.51 | Nile tilapia | 269X | 27159252 | N/A | N/A | 1000 | N/A |
89 | gasAcu1 | 23 | 463,354,448 | 446,627,861 | 16,726,587 | % 2.58 | Stickleback | 6X | 20083130 | Net | 1.916% | 5000 | loose |
90 | tetNig2 | 27 | 358,618,246 | 302,314,788 | 56,303,458 | % 20.27 | Tetraodon | 7.9X | 13390619 | Net | 1.712% | 5000 | loose |
91 | hapBur1 | 7,994 | 831,398,301 | 698,936,397 | 132,461,904 | % 24.10 | Haplochromis burtoni | 1194190 | N/A | N/A | 1000 | N/A | |
92 | takFla1 | 34,223 | 377,992,166 | 314,409,984 | 63,582,182 | % 17.77 | Takifugu flavidus | 315240 | N/A | N/A | 1000 | N/A | |
93 | mayZeb1 | 3,725 | 849,595,388 | 713,527,863 | 136,067,525 | % 25.04 | Maylandia zebra | 3702874 | N/A | N/A | 1000 | N/A | |
94 | punNye1 | 7,233 | 830,129,318 | 698,757,151 | 131,372,167 | % 24.56 | Pundamilia nyererei | 2525540 | N/A | N/A | 1000 | N/A | |
95 | fr3 | 6,835 | 391,484,715 | 350,961,831 | 40,522,884 | % 19.01 | Fugu | 8.5X | 11516971 | N/A | N/A | 1000 | N/A |
96 | astMex1 | 10,736 | 1,191,259,254 | 964,251,514 | 227,007,740 | % 39.11 | Astyanax mexicanus | 1775308 | N/A | N/A | 1000 | N/A | |
97 | danRer7 | 1,133 | 1,412,464,843 | 1,409,770,109 | 2,694,734 | % 52.06 | Zebrafish | 30X | 54093808 | Net | 2.790% | 5000 | loose |
98 | oryLat2 | 7,189 | 869,000,216 | 700,386,597 | 168,613,619 | % 33.09 | Medaka | 10.6X | 29908082 | Net | 1.849% | 5000 | loose |
99 | xipMac1 | 20,632 | 729,664,433 | 652,811,251 | 76,853,182 | % 26.62 | Xiphophorus maculatus | 1303070 | N/A | N/A | 1000 | N/A | |
100 | petMar2 | 25,006 | 885,550,958 | 647,368,134 | 238,182,824 | % 42.47 | Lamprey | 5.0X | 184619 | Net | 1.046% | 5000 | loose |