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| By default the Gbib update script /root/updateBrowser.sh checks every minute if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib. This check is randomly spread over 30 seconds (crontab + /root/cronUpdate.sh).
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| By supplying the parameter "force" to updateBrowser, the box will skip this check and update without checking the flag file.
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| If the file on hgDownload is newer than the flagfile, it will start the update (/root/updateBrowser.sh):
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| # Update the update script itself from hgwdev.soe.ucsc.edu/browserbox and also update the hg.conf from there
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| # Update all existing /gbdb files
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| # Update all mysql files
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| # Update all hgcentral files + patch the blat server table
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| # Patch the menu to remove hgNear and add hgMirror
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| # Place the symlink to /media from htdocs/folders
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| # Run hgMirror to hide some tracks on hg19 and remove some searches from hg19
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| updateBrowser.sh also accepts an option: either "alpha", "beta" or "devbox". These pull the CGIs from hgwdev. They don't use rsync but a normal http download which has to be prepared first with "boxPrep alpha|beta|devbox" as qateam on hgwdev.
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| Note that if you have updated to alpha/beta/devbox state once, then the box won't update anymore from hgdownload until the next Sunday, when hgdownload is recreated.
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| Note: Will have to move updateBrowser.sh and hg.conf to hgdownload for release.
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| auto updates can be deactivated on a box with autoUpdateOff and reactivated with autoUpdateOn.
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Revision as of 20:39, 15 October 2014
This page is no longer maintained.
