Other genome browsers

Official UCSC Genome mirror site

• euronode Bielefeld, Germany.

This mirror is maintained by the Browser staff.

UCSC Genome mirror sites

These mirrors are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.

• Medical College of Wisconsin Milwaukee, WI

• Cornell University Ithaca, NY

• Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark

Locations using UCSC software on other organisms (or people) or additional content on our organisms

Note that not all of these sites are updating their software to the latest versions. To learn what version is being used, look at the v### number at the top of the hgTracks page ([host]/cgi-bin/hgTracks).

• Ververt monkey at McGill

• Cannabis sativa at U Toronto

• Aedes aegypti and two other mosquitoes at CalTech

• Penn State has some personal human genomes not at UCSC

• Manchester, UK has some local content on mouse, C. intestinalis and other orgs. (seems to have been retired or moved)

• Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis has content not on the main UCSC Browser, but mostly also contained in the Track Data Hubs at UCSC.

• UNLV Las Vegas Genome Browser hosting D. melanogaster and some plants (including rice, sorghum, Arabidopsis)

• Sticklebrowser at Stanford.

• Heliconius butterfly at Cornell (butterflygenome.org).

• Puerto Rican parrot at WashU (+ alternate assemblies of Drosophila spp.).

• Pleurobrachia bachei ctenophore from Whitney Laboratory for Marine Bioscience, St. Augustine, FL.

• soybean and others at UCLA.

• GWIPS-viz Genome-Wide Information on Protein Synthesis, University College, Cork, Ireland.

Browsers Using Non-UCSC Software

The UCSC Genome Browser is primarily funded to host vertebrate genomes. If you are looking for a genome browser that UCSC does not host, it may be available from another source. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.

Animal Browsers

• 1000 Genomes A Deep Catalog of Human Genetic Variation

• NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.

• Jim Watson genome browser at CSHL

• Craig Venter genome data release

• dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD

• Vista Lawrence Berkeley Lab, CA

• GARFIELD cat genome browser, Federick, MD

• Panda genome resources

• C. intestinalis: UCSC-based, Gbrowse

• The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...

• Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse

• Aedes aegypti mosquito

• Silkworm Bombyx mori, China

• NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program

Plant Browsers

• EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella

• Arabidopsis Thaliana TAIR-10 UCSC public hub (see also: list of public hubs)

• Brassica rapa UCSC public hub (see also: list of public hubs)

• Ricinus communis UCSC public hub (see also: list of public hubs)

• Arabidopsis genome browser at UCLA

• Arabidopsis genome browser at Dartmouth.

• Arabidopsis arabidopsis.info Ensembl-based genome browser

• UNLV Las Vegas Genome Browser hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster

• gramene.org many rice genomes and other grasses

• Rice Genome Annotation Project hosts Oryza sativa browser

• Rice-Map

• RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)

• Zea mays Maize Genome Sequencing Project

Fungi/Yeast Browsers

• Saccharomyces cerevisiae database and genome browser from SGD/Stanford University

• S. pombe (fission yeast) at NCI, NIH

Other

• Archaea browser from the Lowe Lab at UCSC

• EnsemblBacteria

• EnsemblProtists

• Paramecium tetraurelia Genoscope, France

• JPGV Jena Prokaryotic Genome Browser

See Also

Related Wikis