Ce11 26-way conservation alignment: Difference between revisions
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<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_elegans/all_assembly_versions/GCA_000002985.3_WBcel235/ 01]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11]</TH><TD>[http://www.ncbi.nlm.nih.gov/genome/assembly/554278 Caenorhabditis<BR>elegans]</TD><TD>C. elegans</TD> | ||
<TD>Aug. 2014 (WBcel245/ce11)</TD> | <TD>Aug. 2014 (WBcel245/ce11)</TD> | ||
<TD>Washington University School of Medicine GSC and Sanger Institute WBcel245</TD> | <TD>Washington University School of Medicine GSC and Sanger Institute WBcel245</TD> | ||
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<TD>2015-07-09</TD><TD ALIGN=RIGHT>40.332%</TD> | <TD>2015-07-09</TD><TD ALIGN=RIGHT>40.332%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_brenneri/all_assembly_versions/GCA_000143925.2_C_brenneri-6.0.1b/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=caePb3 caePb3]</TH><TD>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000143925.2 Caenorhabditis<BR>brenneri]</TD><TD>C. brenneri</TD> | ||
<TD>Nov. 2010 (C. brenneri 6.0.1b/caePb3)</TD> | <TD>Nov. 2010 (C. brenneri 6.0.1b/caePb3)</TD> | ||
<TD>The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2)</TD> | <TD>The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2)</TD> | ||
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<TD>2015-07-02</TD><TD ALIGN=RIGHT>41.715%</TD> | <TD>2015-07-02</TD><TD ALIGN=RIGHT>41.715%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS225/genomes/c_briggsae/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4]</TH><TD>[ | <TH>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS225/genomes/c_briggsae/ 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=cb4 cb4]</TH><TD>[ftp://ftp.sanger.ac.uk/pub/wormbase/WS225/genomes/c_briggsae/ Caenorhabditis<BR>briggsae]</TD><TD>C. briggsae</TD> | ||
<TD>Apr. 2011 (WS225/cb4)</TD> | <TD>Apr. 2011 (WS225/cb4)</TD> | ||
<TD>Washington University School of Medicine GSC and Sanger Institute cb4 </TD> | <TD>Washington University School of Medicine GSC and Sanger Institute cb4 </TD> | ||
Revision as of 21:18, 27 August 2015
see also
- C. elegans 26-way Ce11 26-way Genome size statistics
- C. elegans 26-way Ce11 26-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on ce11 |
% of ce11 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | ce11 | Caenorhabditis elegans | C. elegans | Aug. 2014 (WBcel245/ce11) | Washington University School of Medicine GSC and Sanger Institute WBcel245 | 2015-06-10 | 2015-06-10 | N/A | N/A |
| 02 | caeSp51 | Caenorhabditis sp5 ju800 | C. sp. 5 ju800 | Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51) | University of Edinburgh Caenorhabditis sp. 5 genome project | 2015-07-08 | 2015-07-08 | 2015-07-09 | 40.332% |
| 03 | caePb3 | Caenorhabditis brenneri | C. brenneri | Nov. 2010 (C. brenneri 6.0.1b/caePb3) | The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2) | 2011-06-08 | 2011-06-08 | 2015-07-01 | 40.638% |
| 04 | caeRem4 | Caenorhabditis remanei | C. remanei | Jul. 2007 (WS220/caeRem4) | Washington University School of Medicine GSC C. remanei 15.0.1 | 2011-05-25 | 2011-05-25 | 2015-07-02 | 41.715% |
| 05 | cb4 | Caenorhabditis briggsae | C. briggsae | Apr. 2011 (WS225/cb4) | Washington University School of Medicine GSC and Sanger Institute cb4 | 2011-05-24 | 2011-05-24 | 2015-07-01 | 39.384% |
| 06 | caeSp111 | Caenorhabditis tropicalis | C. tropicalis | Nov. 2010 (WUSTL 3.0.1/caeSp111) | Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1) | 2011-05-31 | 2011-05-31 | 2015-07-07 | 37.870% |
| 07 | caeJap4 | Caenorhabditis japonica | C. japonica | Aug. 2010 (WUSTL 7.0.1/caeJap4) | Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1) | 2011-06-03 | 2011-06-03 | 2015-06-25 | 27.709% |
| 08 | caeAng2 | Caenorhabditis angaria | C. angaria | Mar. 2012 (WS245/caeAng2) | Division of Biology, California Institute of Technology | 2015-06-30 | 2015-06-30 | 2015-06-30 | 17.682% |
| 09 | priPac3 | Pristionchus pacificus | P. pacificus | Aug. 2014 (P_pacificus-v2/priPac3) | Max Planck Institute for Developmental Biology P. pacificus genome project | 2015-07-01 | 2015-07-01 | 2015-07-01 | 6.308% |
| 10 | priExs1 | Pristionchus exspectatus | P. exspectatus | Mar. 2014 (WS243/P_exspectatus_v1/priExs1) | Max Planck Institite for Developmental Genetics | 2015-07-14 | 2015-07-15 | 2015-07-23 | 6.222% |
| 11 | burXyl1 | Bursaphelenchus xylophilus | Pine wood nematode | Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1) | Wellcome Trust Sanger Institute B. xylophilus genome project | 2015-07-09 | 2015-07-09 | 2015-07-09 | 6.291% |
| 12 | ancCey1 | Ancylostoma ceylanicum | A. ceylanicum | Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1) | Cornell University Ancylostoma ceylanicum genome project | 2015-07-15 | 2015-07-15 | 2015-07-23 | 9.736% |
| 13 | haeCon2 | Haemonchus contortus | Barber pole worm | Jul. 2013 (WormBase WS239/haeCon2) | Sanger Institute | 2015-07-02 | 2015-07-06 | 2015-07-07 | 8.936% |
| 14 | necAme1 | Necator americanus | N. americanus | Dec. 2013 (WS242/N_americanus_v1/necAme1) | The Genome Institute at Washington University | 2015-07-15 | 2015-07-15 | 2015-07-23 | 8.902% |
| 15 | panRed1 | Panagrellus redivivus | Microworm | Feb. 2013 (Pred3/panRed1) | California Institute of Technology P. redivivus genome project | 2015-07-01 | 2015-07-01 | 2015-07-01 | 6.585% |
| 16 | hetBac1 | Heterorhabditis bacteriophora | H. bacteriophora/m31e | Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1) | Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0 | 2015-07-14 | 2015-07-15 | 2015-07-23 | 10.486% |
| 17 | ascSuu1 | Ascaris suum | Pig roundworm | Sep. 2012 (WS229/AscSuum_1.0/ascSuu1) | Beijing Genomics Institute | 2015-07-13 | 2015-07-14 | 2015-07-23 | 5.722% |
| 18 | strRat2 | Strongyloides ratti | Threadworm | Sep. 2014 (S. ratti ED321/strRat2) | Wellcome Trust Sanger Institute S. ratti genome project | 2015-07-08 | 2015-07-08 | 2015-07-09 | 5.669% |
| 19 | triSpi1 | Trichinella spiralis | Trichinella | Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1) | WashU School of Medicine T. spiralis genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 2.848% |
| 20 | triSui1 | Trichuris suis | Whipworm | Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1) | University of Melboure T. suis (male) genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 2.917% |
| 21 | melInc2 | Meloidogyne incognita | M. incognita | Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2) | Sanger and Genoscope | 2015-06-30 | 2015-06-30 | 2015-06-30 | 3.516% |
| 22 | melHap1 | Meloidogyne hapla | M. hapla | Sep. 2008 (M. hapla VW9 WS210/melHap1) | The Center for the Biology of Nematode Parasitism, N.C. State | 2010-09-21 | 2010-09-21 | 2015-06-26 | 3.916% |
| 23 | bruMal2 | Brugia malayi | Filarial worm | May. 2014 (WS244/B_malayi-3.1/bruMal2) | University of Pittsburgh B. malayi genome project | 2015-08-11 | 2015-08-11 | 2015-08-11 | 5.065% |
| 24 | oncVol1 | Onchocerca volvulus | O. volvulus | Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1) | Wellcome Trust Sanger Institute O. volvulus genome project | 2015-08-10 | 2015-08-10 | 2015-08-10 | 5.193% |
| 25 | loaLoa1 | Loa loa | Eye worm | Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1) | Broad Institute L. loa genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 5.056% |
| 26 | dirImm1 | Dirofilaria immitis | Dog heartworm | Sep. 2013 (WS240/D. immitis v2.2/dirImm1) | Edinburgh University D. immitis genome project | 2015-07-09 | 2015-07-09 | 2015-07-23 | 5.005% |
