GapOverlap: Difference between revisions

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m (short db names for the mouse strains)
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The 'year' is what we have in the dbDb table as indicated from the
The 'year' is what we have in the dbDb table as indicated from the
assembly information files for the date of the assembly.  A few do
assembly information files for the date of the assembly.  A few do
not have dates (set to 1880), and do not have database genome browsers
not have dates (set to 1880), and do not have database genome browsers.
The example item is a worst case example, where the ratio of dup
 
The example item is a worst case example, where the ratio of duplicate
sequence size to gap size is the highest, i.e. smallest gap with largest dup size
sequence size to gap size is the highest, i.e. smallest gap with largest dup size


Line 33: Line 34:
where the alignment ends exactly at the end of the upstream sequence before
where the alignment ends exactly at the end of the upstream sequence before
the gap and begins exactly at the start of the downstream sequence after the gap.
the gap and begins exactly at the start of the downstream sequence after the gap.


== gapOverlap table statistics ==
== gapOverlap table statistics ==

Revision as of 17:52, 20 April 2017

methods

The measurements are taken from the gapOverlap.bed[.gz] file in /hive/data/genomes/<db>/bed/gapOverlap/gapOverlap.bed[.gz] The score column in the bed file (column 5) is the size of the duplicated sequence. The gap size between the duplicated sequence is calculated from: end - start + 2 * score

The size of the duplicated sequence is between 30 bases and 1000 bases, we are not checking for sizes outside that range.

The item total is the sum of the sizes of the duplicated sequences. Not both sides though, just one side. This indicates how much sequence is duplicated. Multiply this by 2 to see total amount of sequence involved in these repeats for both sides.

The gap total is the sum of the sizes of all the gaps involved.

table features

The table columns can be sorted, click on the up/down arrow icon in the column header. The 'year' is what we have in the dbDb table as indicated from the assembly information files for the date of the assembly. A few do not have dates (set to 1880), and do not have database genome browsers.

The example item is a worst case example, where the ratio of duplicate sequence size to gap size is the highest, i.e. smallest gap with largest dup size

These ends were found by taking 1,000 bases on each side of any run of N's in the sequence, thus any gap, and aligned with the blat command: 

 blat -q=dna -minIdentity=95 -repMatch=10 upstream.fa downstream.fa

Filtering the PSL output for a perfect match, no mis-matches, and therefore of equal size matching sequence, where the alignment ends exactly at the end of the upstream sequence before the gap and begins exactly at the start of the downstream sequence after the gap.

gapOverlap table statistics

count year dbName ncbiAsmId assembly method item

count

item

median

item

total

  gap

median

gap

total

example item

dup size, gap size, link

scatter plot

dup size vs. gap size

001 2016 WSB_EiJ GCA_001624835.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 11455 236 3524308   25 10785288 994, 1, chrX:58921651-58923639 plot GCA_001624835.1_WSB_EiJ_v1
002 2016 A_J GCA_001624215.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 38843 80 6428892   25 14025482 1000, 1, chr17:63064911-63066911 plot GCA_001624215.1_A_J_v1
003 2016 CBA_J GCA_001624475.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 24180 279.5 7933814   26 26736971 999, 1, chr16:100093490-100095488 plot GCA_001624475.1_CBA_J_v1
004 2016 CAROLI_EIJ GCA_900094665.1 tbd 6469 70 484857   1 599072 945, 1, chr1:145228793-145230683 plot GCA_900094665.1_CAROLI_EIJ_v1
005 2016 LP_J GCA_001632615.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 18175 98 5185817   25 13674278 997, 1, chr12:42758762-42760756 plot GCA_001632615.1_LP_J_v1
006 2016 BALB_cJ GCA_001632525.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 15793 363 5543975   25 10053337 999, 1, chr4:59636957-59638955 plot GCA_001632525.1_BALB_cJ_v1
007 2016 PAHARI_EIJ GCA_900095145.1 tbd 6365 69 479534   1 675789 1000, 1, chr7:107557946-107559946 plot GCA_900095145.1_PAHARI_EIJ_v1
008 2016 PWK_PhJ GCA_001624775.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 246352 65 16823451   25 10585326 1000, 11, chrX:47500642-47502652 plot GCA_001624775.1_PWK_PhJ_v1
009 2016 DBA_2J GCA_001624505.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 13245 98 3606947   25 7251641 999, 1, chr10:47277903-47279901 plot GCA_001624505.1_DBA_2J_v1
010 2016 NOD_ShiLtJ GCA_001624675.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 36838 172 10515906   26 25076950 1000, 1, chr15:69777938-69779938 plot GCA_001624675.1_NOD_ShiLtJ_v1
011 2016 SPRET_EiJ GCA_001624865.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b 17567 516 8157541   100 12022683 1000, 1, chr10:66049175-66051175 plot GCA_001624865.1_SPRET_EiJ_v1
012 2016 NZO_HlLtJ GCA_001624745.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 21209 448 8647582   25 14665906 1000, 1, chr10:29328015-29330015 plot GCA_001624745.1_NZO_HlLtJ_v1
013 2016 129S1_SvImJ GCA_001624185.1 SGA v. 0.9.19; Ragout v. 2.0b 20479 400 7813478   25 15456883 1000, 1, chr15:34994444-34996444 plot GCA_001624185.1_129S1_SvImJ_v1
014 2016 C57BL_6NJ GCA_001632555.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 24698 97 6239791   25 14404336 992, 1, chr10:109927459-109929443 plot GCA_001632555.1_C57BL_6NJ_v1
015 2016 AKR_J GCA_001624295.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 18106 335 6717178   25 14468858 1000, 1, chr16:53464467-53466467 plot GCA_001624295.1_AKR_J_v1
016 2016 CAST_EiJ GCA_001624445.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail Genomics v. August-2015; Ragout v. 2.0b 14714 324 5063290   100 10013826 1000, 1, chr12:100100159-100102159 plot GCA_001624445.1_CAST_EiJ_v1
017 2016 C3H_HeJ GCA_001632575.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 19436 307 6287513   26 12931709 1000, 1, chr1:52782023-52784023 plot GCA_001632575.1_C3H_HeJ_v1
018 2016 FVB_NJ GCA_001624535.1 SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b 14811 355 4902432   11 8504942 1000, 1, chr17:22790916-22792916 plot GCA_001624535.1_FVB_NJ_v1
019 2013 CHM1 GCF_000306695.2 SRPRISM v. 2.4.28-alpha; ARGO v. 0.1 85 86 10897   88 65164 319, 10, chr6:108876987-108877634 plot CHM1
020 2014 acaChl1 GCF_000695815.1 SOAPdenovo v. 1.6 5 170 1250   188 2340 722, 188, KK833582:5976-7607 plot acaChl1
023 2009 ailMel1 GCF_000004335.2 tbd 48 104 10594   1193 82504 75, 1, GL192694.1:348745-348895 plot ailMel1
024 2012 allMis1 GCF_000281125.1 Allpaths v. R41313; manual scaffolding 1151 83 273934   1 74939 999, 1, JH739280:136433-138431 plot allMis1
025 2013 allSin1 GCF_000455745.1 SOAPdenovo v. 1.05 95 125 26114   2265 261774 69, 10, KE696011:2095494-2095641 plot allSin1
026 2013 amaVit1 GCA_000332375.1 Ray software v. 3 10099 81 1392334   172 2756641 492, 13, KB238901:2710-3706 plot amaVit1
027 2013 anaPla1 GCF_000355885.1 SOAPdenovo Release v. 1.03 31 251 10663   1660 94318 99, 1, KB742632:907264-907462 plot anaPla1
028 2014 ancCey1 GCA_000688135.1 Velvet v. 1.2.05; BGI GapCloser v. 1.12 (release_2011); HaploMerger v. 20111230; ERANGE v. 3.2 805 154 171926   1 85569 981, 1, JARK01000206v1:43215-45177 plot ancCey1
029 2014 angJap1 GCA_000470695.1 CLC NGS Cell v. 3.2; CLC NGS Cell v. 4.0beta 4539 91 477038   1 610535 588, 1, KI304555:142639-143815 plot angJap1
030 2007 anoCar1 tbd tbd 20 383.5 8167   537.5 23338 965, 100, scaffold_84:3853690-3855719 plot anoCar1
031 2010 anoCar2 GCF_000090745.1 Arachne v. 3.0.0 25 240 6694   258 26105 318, 100, chr4:54548520-54549255 plot anoCar2
032 2003 anoGam1 tbd tbd 7 528 3139   1000 21041 1000, 384, chr2L:5019927-5022310 plot anoGam1
033 2013 apaSpi1 GCA_000385615.1 SOAPdenovo v. 1.0.5 607 61 34340   100 56961 86, 10, KB929338:2579176-2579357 plot apaSpi1
035 2004 apiMel1 tbd tbd 216 50 12150   10 24454 64, 1, Group14.17:517485-517613 plot apiMel1
036 2005 apiMel2 tbd tbd 133 50 7371   50 19757 168, 50, Group4:4855105-4855490 plot apiMel2
037 2005 apiMel3 tbd tbd 199 62 16045   50 27354 198, 50, Group15:1672512-1672957 plot apiMel3
038 2010 apiMel4 GCF_000002195.4 Atlas assembly system v. before 2011 226 52.5 13378   50 24561 167, 50, Group14:1674117-1674500 plot apiMel4
039 2008 aplCal1 tbd tbd 25 77 3383   100 16863 390, 100, scaffold_1802:24095-24974 plot aplCal1
040 2014 aptFor1 GCF_000699145.1 SOAPdenovo v. 1.6 109 147 26798   1575 323838 779, 98, KL225582:135043-136698 plot aptFor1
041 2015 aptMan1 GCF_001039765.1 tbd 15742 124 4653010   1 3331011 1000, 1, NW_013987125v1:2508272-2510272 plot aptMan1
042 2014 aquChr1 GCA_000696035.1 ABySS v. 1.3.6 4592 43 201248   65 16118238 65, 1, KK850461:8872-9002 plot aquChr1
043 2014 aquChr2 GCA_000766835.1 AllPaths-LG v. August 2013 326 82.5 31349   1 143600 1000, 1, KN265664v1:16826772-16828772 plot aquChr2
044 2013 araMac1 GCA_000400695.1 CLC Genomics Workbench v. 4.9 120 48.5 7929   33 27135 241, 2, KE047968:4314-4797 plot araMac1
045 1880 araTha1 GCF_000001735.3 tbd 1 289 289   60 60 289, 60, chr3:13855281-13855918 plot araTha1
046 2012 ascSuu1 GCA_000298755.1 SOAPdenovo v. 1.04 9 404 3688   555 6481 1000, 247, JH879107v1:69728-71974 plot ascSuu1
047 2013 astMex1 GCF_000372685.1 AllPathsLG v. Jan-2013 1385 78 137888   100 1964877 647, 1, KB872443:19678-20972 plot astMex1
048 2013 balAcu1 GCF_000493695.1 SOAPdenovo v. 16-Mar-2012 211 149 57860   821 371511 926, 15, KI537556:2252563-2254429 plot balAcu1
049 2014 balPav1 GCA_000709895.1 SOAPdenovo v. 1.6 5 270 1303   216 1098 391, 46, KL482982:8685-9512 plot balPav1
050 2014 bisBis1 GCA_000754665.1 MaSuRCA v. 2.1.0 8184 72 712109   100 947641 933, 100, KN265089v1:519297-521262 plot bisBis1
052 2011 bosMut1 GCA_000298355.1 SOAPdenovo v. 1.14 139 83 27917   1274 256420 71, 14, JH880933:479978-480133 plot bosMut1
053 2004 bosTau1 tbd tbd 6550 40 289123   50 609155 200, 50, SCAFFOLD51732:9156-9605 plot bosTau1
054 2005 bosTau2 tbd tbd 4361 105 564259   50 2525381 997, 50, scaffold4383:34413-36456 plot bosTau2
055 2006 bosTau3 tbd tbd 411 51 38673   50 270212 1000, 50, chr10:68862764-68864813 plot bosTau3
056 2007 bosTau4 tbd tbd 437 53 52814   50 376407 1000, 50, chr10:75537624-75539673 plot bosTau4
057 2009 bosTau5 tbd tbd 435 53 51742   50 376650 1000, 50, chr10:75464684-75466733 plot bosTau5
058 2009 bosTau6 GCF_000003055.5 UMD Overlapper v. 2009; additional processing 789 670 463109   100 87080 923, 1, chr22:31476636-31478482 plot bosTau6
059 2011 bosTau7 tbd tbd 413 55 39706   50 141131 1000, 50, chr10:75201034-75203083 plot bosTau7
060 2014 bosTau8 GCF_000003055.5 UMD Overlapper v. 2009; additional processing 789 670 463109   100 87080 923, 1, chr22:31476636-31478482 plot bosTau8
061 2009 bosTauMd3 tbd tbd 789 670 463109   100 87080 923, 1, chr22:31476636-31478482 plot bosTauMd3
062 2006 braFlo1 tbd tbd 31 484 14260   417 12668 375, 1, chrUn:879323570-879324320 plot braFlo1
063 2008 braFlo2 tbd tbd 22 439 8529   411 9064 36, 1, Bf_V2_248:1229532-1229604 plot braFlo2
064 1880 braRap1 GCF_000309985.1 SOAPdenovo v. 1.04 12 104 3193   2810 47557 587, 472, chrUn_JH977260:73788-75433 plot braRap1
065 2007 bruMal1 tbd tbd 55 50 6093   1 18780 87, 1, Bmal_supercontig14387:293-467 plot bruMal1
066 2014 bruMal2 tbd tbd 46 124.5 12221   431.5 63506 1000, 20, Bmal_v3_scaffold83:22898-24917 plot bruMal2
067 2013 bubBub1 GCF_000471725.1 MaSuRCA v. 1.8.3 2383 163 395268   100 251657 990, 100, KI418684:2409965-2412044 plot bubBub1
068 2014 bucRhi1 GCF_000710305.1 SOAPdenovo v. 1.6 31 114 5089   78 3263 327, 10, KL526600:8925-9588 plot bucRhi1
070 2011 burXyl1 tbd tbd 65 601 33110   301 19553 977, 300, scaffold00460:102617-104870 plot burXyl1
071 2010 caeAng1 GCA_000165025.1 Velvet v. 0.7.56 414 41 16726   2 1802 46, 2, scafRNAPATH105:2285-2378 plot caeAng1
072 2012 caeAng2 tbd tbd 461 46 19505   2 1495 46, 2, Cang_2012_03_13_00008:384957-385050 plot caeAng2
073 2008 caeJap1 tbd tbd 135 58 10431   186 27893 687, 10, chrUn:37794313-37795696 plot caeJap1
074 2009 caeJap2 tbd tbd 765 103 130030   1018 891958 707, 10, chrUn:150512438-150513861 plot caeJap2
075 1880 caeJap2a tbd tbd 764 103 129273   1018 890958 707, 10, Cjap_Contig4853:3969-5392 plot caeJap2a
077 2010 caeJap4 GCA_000147155.1 Celera assembler v. 6.0 16 98.5 3188   20 1468 1000, 20, Scaffold17129:65445-67464 plot caeJap4
078 2007 caePb1 tbd tbd 115 44 9160   164 37674 476, 10, chrUn:52430125-52431086 plot caePb1
079 2008 caePb2 tbd tbd 83 37 3814   222 63681 230, 10, chrUn:74484521-74484990 plot caePb2
080 2010 caePb3 GCA_000143925.2 PCAP v. 9/3/04 89 37 4915   222 74680 230, 10, Scfld02_75:384084-384553 plot caePb3
081 2005 caeRem1 tbd tbd 58 96 10213   133.5 11238 678, 10, SuperCont3:723391-724756 plot caeRem1
082 2006 caeRem2 tbd tbd 58 96 10213   133.5 11238 678, 10, chrUn:13919319-13920684 plot caeRem2
083 2007 caeRem3 tbd tbd 46 50 5760   197.5 14178 460, 10, chrUn:27560772-27561701 plot caeRem3
084 2007 caeRem4 GCF_000149515.1 tbd 46 50 5760   197.5 14178 460, 10, Crem_Contig253:25277-26206 plot caeRem4
085 2010 caeSp111 GCA_000186765.1 Celera assembler v. 6.0 4 194.5 760   20 80 333, 20, Scaffold629:32984714-32985399 plot caeSp111
086 2012 caeSp51 tbd tbd 14 34 730   12.5 894 201, 3, Csp5_scaffold_09411:792-1196 plot caeSp51
087 2010 caeSp71 tbd tbd 535 47 30250   213 312209 162, 20, Scaffold11:29462-29805 plot caeSp71
088 2010 caeSp91 tbd tbd 26 217.5 7172   8745 180575 1000, 20, Scaffold7498:303469-305488 plot caeSp91
089 2014 calAnn1 GCF_000699085.1 SOAPdenovo v. 1.6 89 127 16337   1006 168943 440, 38, KL218155:301090-302007 plot calAnn1
090 2007 calJac1 tbd tbd 1597 42 129367   182 377725 937, 10, Contig4771:110891-112774 plot calJac1
091 2009 calJac3 GCF_000004665.1 PCAP v. 2009 1516 43 116646   183.5 452860 807, 10, chr3:111956760-111958383 plot calJac3
092 2013 calMil1 GCF_000165045.1 Celera v. 6.1 31 123 8335   100 70257 1000, 100, KI635945:3331497-3333596 plot calMil1
093 2011 camFer1 GCF_000311805.1 SOAPdenovo v. V1.05 11 205 2059   129 2031 237, 2, KB018701:319294-319769 plot camFer1
094 2004 canFam1 tbd tbd 12 153 2669   210.5 8118 104, 1, chr18:45376349-45376557 plot canFam1
095 2005 canFam2 tbd tbd 32 199.5 8095   1 5245 746, 1, chrUn:76334072-76335564 plot canFam2
096 2011 canFam3 GCF_000002285.3 Arachne v. April 2010 34 175.5 8234   10 4545 746, 10, chrUn_JH374132:3424-4925 plot canFam3
099 2014 capCar1 GCF_000700745.1 SOAPdenovo v. 1.6 4 105 618   48 354 139, 26, KL359104:23556-23859 plot capCar1
100 2012 capHir1 GCF_000317765.1 SOAPdenovo v. 1.03 627 41 71810   100 546475 988, 16, chr16:40339512-40341503 plot capHir1
101 2014 carCri1 GCF_000690535.1 SOAPdenovo v. 1.6 4 161 644   210.5 878 52, 13, KK509558:67998-68114 plot carCri1
102 2005 cavPor2 tbd tbd 393 427 164744   100 166667 986, 100, scaffold_291164:123135-125206 plot cavPor2
103 2008 cavPor3 GCF_000151735.1 unknown v. before 2008 3 145 552   100 961 313, 100, scaffold_799:9280-10005 plot cavPor3
104 2002 cb1 tbd tbd 81 163 20408   145 39126 645, 10, chrUn:51532611-51533910 plot cb1
105 2005 cb2 tbd tbd 86 153 21033   163.5 42461 645, 10, chrI:9244132-9245431 plot cb2
106 2007 cb3 tbd tbd 80 148.5 19176   166.5 39580 645, 10, chrI:9355978-9357277 plot cb3
107 2011 cb4 tbd tbd 86 153 20969   151.5 40114 645, 10, chrI:11247250-11248549 plot cb4
118 2012 cerSim1 GCF_000283155.1 ALLPATHS v. R41370 1818 68 129697   100 270005 815, 100, JH767775:6384924-6386653 plot cerSim1
119 2014 chaVoc1 GCF_000708025.1 SOAPdenovo v. 1.6 47 200 13700   1514 133699 780, 257, KL409415:13594818-13596634 plot chaVoc1
120 2014 chaVoc2 GCF_000708025.1 SOAPdenovo v. 1.6 47 200 13700   1514 133699 780, 257, KL873469:13594818-13596634 plot chaVoc2
121 2013 cheMyd1 GCF_000344595.1 SOAPdenovo v. 1.05 129 204 37111   798 277853 314, 27, KB535131:1778822-1779476 plot cheMyd1
122 2012 chiLan1 GCA_000276665.1 ALLPATHS v. R40776 1183 70 101029   100 267937 996, 100, JH721987:2542897-2544988 plot chiLan1
123 2013 chlSab1 tbd tbd 23634 81 2123928   10 396229 923, 1, chrX:117110178-117112024 plot chlSab1
124 2014 chlSab2 GCF_000409795.2 ALLPATHS and Newbler v. 13-Feb-2013 23631 81 2123656   10 396199 923, 1, chrX:117110178-117112024 plot chlSab2
125 2014 chlUnd1 GCF_000695195.1 SOAPdenovo v. 1.6 5 293 1223   129 617 310, 65, KK747264:28313-28997 plot chlUnd1
126 2008 choHof1 GCA_000164785.1 tbd 104 54.5 14520   145.5 33892 986, 100, scaffold_56240:3133-5204 plot choHof1
127 2012 chrAsi1 GCF_000296735.1 allpaths v. R42316 HAPLOIDIFY=True 3416 76 339291   100 720504 991, 100, JH823765:402000-404081 plot chrAsi1
128 2011 chrPic1 tbd tbd 7555 79 738667   50 1230115 64, 1, JH584466:5301285-5301413 plot chrPic1
129 2014 chrPic2 GCA_000241765.2 Newbler v. 2.6 6315 77 629230   206 2593694 1000, 10, chrUn_KK083066v1:1300793-1302802 plot chrPic2
130 2002 ci1 GCA_000183065.1 tbd 28 311.5 8955   50 11060 833, 50, Scaffold_7:289989-291704 plot ci1
131 2005 ci2 tbd tbd 2 472.5 945   173 346 843, 296, scaffold_403:40134-42115 plot ci2
132 2011 ci3 GCF_000224145.1 tbd 22 258.5 6455   50 9493 597, 50, chrUn_NW_004190451v1:5050-6293 plot ci3
133 2003 cioSav1 tbd tbd 8 124 1554   100 2755 296, 100, ps_146:263977-264668 plot cioSav1
134 2005 cioSav2 tbd tbd 6 402.5 2394   200 1668 636, 10, reftig_72:2536022-2537303 plot cioSav2
135 2015 colAng1 GCF_000951035.1 AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2 5690 77 626146   50 1472786 996, 50, NW_012119888v1:35718-37759 plot colAng1
136 2013 colLiv1 GCF_000337935.1 SOAPdenovo v. 2.0 19 116 3824   1290 32865 33, 57, KB379196:2050-2172 plot colLiv1
137 2014 colStr1 GCF_000690715.1 SOAPdenovo v. 1.6 5 161 910   308 1203 362, 113, KK530485:3407-4243 plot colStr1
138 2012 conCri1 GCF_000260355.1 AllPaths v. 2012 1110 72 108033   100 233431 924, 100, JH655880:49229854-49231801 plot conCri1
139 2014 corBra1 GCF_000691975.1 SOAPdenovo v. 1.6 41 90 7520   1445 112176 259, 28, KK718436:193091-193636 plot corBra1
140 2014 corCor1 GCF_000738735.1 AllPaths v. Allpaths-LG version 41687 21 81 2189   1027 27602 81, 1, KL997637:955359-955521 plot corCor1
141 2013 cotJap1 GCA_000511605.1 Soapdenovo v. 1.0.5b; bwa v. 0.5.9; SSPACE v. 1.2 1122 33 38101   68 67651 214, 1, DF262918:84572-85000 plot cotJap1
142 2013 criGri1 GCF_000419365.1 SOAPdenovo v. 2.2 588 217 196516   1481.5 1359815 422, 10, KE379019:554914-555767 plot criGri1
143 2011 criGriChoV1 GCF_000223135.1 SOAPdenovo v. 1.05 213 162 53736   1526 472877 369, 10, NW_003615838v1:158557-159304 plot criGriChoV1
144 2014 cucCan1 GCF_000709325.1 SOAPdenovo v. 1.6 113 242 41656   972 203191 961, 69, KL448150:311854-313844 plot cucCan1
145 2014 cynSem1 GCF_000523025.1 SOAPdenovo v. April-2011 78 311.5 27891   935.5 165198 568, 38, chr11:13981930-13983103 plot cynSem1
146 2014 cypVar1 GCA_000732505.1 AllPaths v. May 2014 3240 89 423504   1 2210432 1000, 1, KL653732:89449-91449 plot cypVar1
147 2003 danRer1 tbd tbd 1280 57 186413   10 322061 1000, 10, chr25:16217228-16219237 plot danRer1
148 2014 danRer10 GCF_000002035.5 tbd 575 174 105525   10 17550 484, 10, chr5:1032421-1033398 plot danRer10
149 2004 danRer2 tbd tbd 1150 58 191859   10 223764 1000, 10, chr10:26174984-26176993 plot danRer2
150 2005 danRer3 tbd tbd 819 58 88143   10 121196 776, 10, chrUn:112388525-112390086 plot danRer3
151 2006 danRer4 tbd tbd 726 65.5 121967   14 135012 705, 11, chr25:30060270-30061690 plot danRer4
152 2007 danRer5 tbd tbd 1559 170 288298   100 155702 73, 1, chr21:35548773-35548919 plot danRer5
153 2008 danRer6 tbd tbd 1421 133 225674   100 142101 1000, 100, Zv8_scaffold431:54613-56712 plot danRer6
154 2010 danRer7 GCF_000002035.4 tbd 1245 164 217595   100 124500 900, 100, chr22:2241720-2243619 plot danRer7
155 2005 dasNov1 tbd tbd 55 123 12971   111 31368 681, 100, scaffold_3005:3743-5204 plot dasNov1
156 2008 dasNov2 tbd tbd 109 136 25865   100 58752 836, 100, scaffold_3394:70496-72267 plot dasNov2
157 2011 dasNov3 GCF_000208655.1 Celera Assembler v. 6.0; Atlas-Link; Atlas-Gap-Fill 239 46 16270   50 94236 677, 50, JH564516:24848-26251 plot dasNov3
158 2014 dicLab1 GCA_000689215.1 tbd 275 423 116519   203 134149 994, 20, HG916850:2956140-2958147 plot dicLab1
159 2008 dipOrd1 GCA_000151885.1 tbd 219 46 46012   379 102683 1000, 100, scaffold_2463:9467-11566 plot dipOrd1
160 2013 dirImm1 tbd tbd 505 175 132528   2 32073 999, 1, nDi_2_2_scaf00035:47420-49418 plot dirImm1
161 2003 dm1 tbd tbd 9 252 2984   20 1237 604, 20, chrU:5250525-5251752 plot dm1
162 2004 dm2 tbd tbd 8 362 2818   20 1217 604, 20, chrU:5250525-5251752 plot dm2
163 2006 dm3 tbd tbd 20 286 4907   100 423940 276, 20, chrU:4943122-4943693 plot dm3
164 2014 dm6 GCF_000001215.4 tbd 15 333 4828   100 1340 276, 20, chrUn_DS483709v1:12934-13505 plot dm6
165 2003 dp2 tbd tbd 113 64 11633   10 9049 784, 10, Contig4969_Contig4496:202614-204191 plot dp2
166 2004 dp3 tbd tbd 136 79.5 17354   79.5 14988 485, 11, chrU:7044759-7045739 plot dp3
167 2006 dp4 tbd tbd 183 81 19720   50 18528 798, 50, chrXL_group1e:8376310-8377955 plot dp4
168 2012 droAlb1 GCA_000298335.1 SOAPdenovo v. 1.04 4360 30 131320   22 152454 76, 1, JH853217:889-1041 plot droAlb1
169 2004 droAna1 tbd tbd 103 252 28853   100 10300 943, 100, 2448822:95133-97118 plot droAna1
170 2005 droAna2 tbd tbd 32 160 7905   701 72786 791, 25, scaffold_13266:420335-421941 plot droAna2
171 2006 droAna3 GCF_000005115.1 tbd 35 143 8663   671 75001 707, 25, scaffold_13230:483470-484908 plot droAna3
172 2013 droBia2 GCA_000233415.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 14 116.5 2103   20 294 447, 20, KB462730:148150-149063 plot droBia2
173 2013 droBip2 GCA_000236285.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 26 103.5 3925   20 520 409, 20, KB464242:790791-791628 plot droBip2
174 2013 droEle2 GCA_000224195.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATKv. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 22 205 4879   20 440 480, 20, KB458480:1051747-1052726 plot droEle2
175 2005 droEre1 tbd tbd 8 86.5 1545   731 6855 773, 25, scaffold_4784:23686196-23687766 plot droEre1
176 2006 droEre2 GCF_000005135.1 tbd 14 221 4384   239 7433 763, 25, scaffold_4784:18133045-18134595 plot droEre2
177 2013 droEug2 GCA_000236325.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 17 52 1627   20 237 72, 1, AFPQ02002129:815-959 plot droEug2
178 2013 droFic2 GCA_000220665.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 11 352 3277   20 220 424, 20, KB457328:1582-2449 plot droFic2
179 2005 droGri1 tbd tbd 17 76 2908   444 11143 734, 312, scaffold_24659:1579-3358 plot droGri1
180 2006 droGri2 GCF_000005155.2 tbd 48 60.5 5904   430.5 52107 774, 25, scaffold_15245:16809148-16810720 plot droGri2
181 2013 droKik2 GCA_000224215.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 12 102 1812   20 1721 361, 20, KB458730:24774-25515 plot droKik2
182 2013 droMir2 GCA_000269505.2 Newbler v. 2.6 122 72 16465   10 57520 1000, 10, chr2:9770771-9772780 plot droMir2
184 2005 droMoj2 tbd tbd 22 219.5 7748   366.5 30847 969, 25, scaffold_6496:4573125-4575087 plot droMoj2
185 2006 droMoj3 GCF_000005175.2 tbd 16 343 6118   426 29359 859, 25, scaffold_6496:14181729-14183471 plot droMoj3
186 2005 droPer1 GCF_000005195.2 tbd 28 402 10502   100 10914 937, 100, super_12:105769-107742 plot droPer1
187 2013 droPse3 GCF_000001765.3 PBJelly v. 12.8.2; Atlas genome assembly 12 51 1309   86 3307 718, 50, chr3:13529933-13531418 plot droPse3
188 2013 droRho2 GCA_000236305.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 35 167 7228   20 1286 454, 20, KB451407:7018-7945 plot droRho2
189 2005 droSec1 GCA_000005215.1 tbd 17 399 6822   100 5318 765, 100, super_59:77146-78775 plot droSec1
190 2005 droSim1 tbd tbd 109 106 23001   298 40703 801, 10, chr2L:4623692-4625303 plot droSim1
191 2014 droSim2 GCF_000754195.2 Velvet v. 1.1.04 104 58 5999   10 1818 359, 8, chr2R:7425888-7426613 plot droSim2
192 2013 droSuz1 GCA_000472105.1 SOAPdenovo v. 2 71 185 16489   1565 196054 364, 76, KI420423:11753-12556 plot droSuz1
193 2013 droTak2 GCA_000224235.2 Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 13 102 2070   20 260 472, 20, KB461286:709634-710597 plot droTak2
194 2004 droVir1 tbd tbd 48 328.5 15839   25 16648 698, 25, scaffold_10:2740496-2741916 plot droVir1
195 2005 droVir2 tbd tbd 13 232 3421   1415 46365 503, 25, scaffold_13324:149342-150372 plot droVir2
196 2006 droVir3 GCF_000005245.1 tbd 12 341 4206   1536.5 45200 423, 25, scaffold_13324:149231-150101 plot droVir3
197 2006 droWil1 GCF_000005925.1 tbd 23 248 8712   1330 51159 759, 50, scaffold_181150:697726-699293 plot droWil1
198 2006 droWil2 GCF_000005925.1 tbd 23 248 8712   1330 51159 759, 50, CH964291:697726-699293 plot droWil2
199 2004 droYak1 tbd tbd 65 340 25549   250 24358 955, 50, chrU:40768288-40770247 plot droYak1
200 2005 droYak2 tbd tbd 99 170 26922   54 37713 684, 10, chr2L:22155365-22156742 plot droYak2
201 2006 droYak3 GCF_000005975.2 tbd 85 143 20479   10 23713 684, 10, chr2L:22155365-22156742 plot droYak3
204 2005 echTel1 tbd tbd 89 83 17114   100 22024 805, 100, scaffold_272928:13200-14909 plot echTel1
205 2012 echTel2 GCF_000313985.1 ALLPATHS v. R37599 3871 93 620444   100 656358 998, 100, JH980317:1376657-1378752 plot echTel2
206 2014 egrGar1 GCF_000687185.1 SOAPdenovo v. 1.6 112 213.5 33121   1093.5 229589 998, 134, KK502338:445846-447975 plot egrGar1
207 2013 eidHel1 GCA_000465285.1 CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 27 45 1294   1 186 68, 1, KE769079:2720-2856 plot eidHel1
208 2012 eleEdw1 GCF_000299155.1 allpaths v. R42301 HAPLOIDIFY=True 1643 71 141553   100 311199 1000, 100, JH947463:2106240-2108339 plot eleEdw1
209 2012 eptFus1 GCF_000308155.1 ALLPATHS v. R40371 1641 75 188916   100 378407 988, 100, JH977647:11513546-11515621 plot eptFus1
210 2007 equCab1 tbd tbd 17 457 5982   100 6200 715, 100, chr2:10720193-10721722 plot equCab1
211 2007 equCab2 tbd tbd 4 160.5 610   1909 18507 258, 295, chr22:17653073-17653883 plot equCab2
212 2014 equPrz1 GCA_000696695.1 SOAPdenovo v. 1.05 39 49 5163   49 12408 78, 11, KK955445:38997-39163 plot equPrz1
213 2006 eriEur1 tbd tbd 343 435 146738   100 209198 1000, 100, scaffold_366352:52823-54922 plot eriEur1
214 2012 eriEur2 GCF_000296755.1 allpaths v. R41008 3596 70 265454   100 1205265 1000, 100, JH835375:3514396-3516495 plot eriEur2
215 2014 esoLuc1 GCA_000721915.1 AllPaths v. 43500 9785 81 734131   15 1227519 950, 10, LG19:14032217-14034126 plot esoLuc1
217 2014 eurHel1 GCF_000690775.1 SOAPdenovo v. 1.6 2 89.5 179   436 872 113, 451, KK569808:53808-54484 plot eurHel1
219 2013 falChe1 GCF_000337975.1 SOAPdenovo v. 1.4 27 206 7614   685 35918 51, 10, KB397780:7020361-7020472 plot falChe1
220 2013 falPer1 GCF_000337955.1 SOAPdenovo v. 1.4 6 48.5 530   631.5 4836 36, 10, KB391040:3398436-3398517 plot falPer1
221 1880 felCat1 tbd tbd 1343 353 504058   874 2708782 1000, 100, scaffold_217423:45453-47552 plot felCat1
222 2006 felCat3 tbd tbd 1343 353 504058   874 2708782 1000, 100, scaffold_217423:45453-47552 plot felCat3
223 2008 felCat4 GCA_000003115.1 tbd 9736 503 4582767   10 9398414 1000, 10, chrA2:8725380-8727389 plot felCat4
224 2011 felCat5 GCF_000181335.1 Celera Assembler v. 6.1 27 72 6437   20 100569 488, 20, chrB2:22462351-22463346 plot felCat5
225 2014 felCat8 GCF_000181335.2 CABOG v. 6.2; MaSuRCA assembler v. 8.0; GAA v. 1.0 630 55 50300   10 89447 895, 14, chrB3:27250577-27252380 plot felCat8
226 2013 ficAlb2 GCF_000247815.1 SOAPdenovo v. 1.05 632 77 75592   40.5 206854 982, 1, chr7:28154426-28156390 plot ficAlb2
227 2002 fr1 tbd tbd 76 155.5 19306   50 16684 71, 1, chrUn:149577204-149577346 plot fr1
228 2004 fr2 tbd tbd 5 313 1682   512 2231 47, 1, chrUn:336404518-336404612 plot fr2
229 2011 fr3 GCF_000180615.1 tbd 6 229 1827   286 2291 47, 1, HE592038:5063-5157 plot fr3
230 2014 fulGla1 GCF_000690835.1 SOAPdenovo v. 1.6 8 336.5 2583   103.5 1637 450, 20, KK597768:8602-9521 plot fulGla1
231 2010 gadMor1 GCA_000231765.1 tbd 168 53 11363   270 70748 51, 1, CAEA01526699:46-148 plot gadMor1
232 2004 galGal2 tbd tbd 114 40 12930   124 17674 778, 21, chr3:68417113-68418689 plot galGal2
233 2006 galGal3 tbd tbd 729 37 34199   500 325853 479, 10, chrUn_random:55035794-55036761 plot galGal3
234 2011 galGal4 GCF_000002315.3 Celera Assembler v. 5.4 55 401 22946   100 31537 805, 100, chr19:3903221-3904930 plot galGal4
235 2015 galGal5 GCF_000002315.4 MHAP/PBcR v. 8.2beta 1 33 33   795 795 33, 795, chrUn_NT_465606v1:9086-9946 plot galGal5
236 2014 galVar1 GCF_000696425.1 SOAPdenovo2 v. April 2014 58964 61 5626241   419 24866346 997, 1, NW_007727116v1:311725-313719 plot galVar1
237 2006 gasAcu1 tbd tbd 8 46.5 1970   117.5 2520 841, 100, chrUn:38727446-38729227 plot gasAcu1
239 2009 gavGan0 tbd tbd 30236 134 5187944   5000 145799649 915, 10, scaffold24725:12789-14628 plot gavGan0
240 2014 gavSte1 GCF_000690875.1 SOAPdenovo v. 1.6 5 164 848   318 2312 269, 245, KK640233:828-1610 plot gavSte1
241 2012 geoFor1 GCF_000277835.1 SOAPdenovo v. 2.01 32 105.5 4877   945.5 51025 617, 11, JH739922:1318693-1319937 plot geoFor1
243 2009 gorGor2 tbd tbd 6585 247 2365617   10 499615 1000, 10, chr10_101645027_418909:206049-208058 plot gorGor2
244 2011 gorGor3 GCF_000151905.1 tbd 6926 246 2475426   10 533805 1000, 10, chr10:101539188-101541197 plot gorGor3
245 2014 gorGor4 GCA_000151905.3 tbd 8691 94 1514940   25 982883 246, 1, chr9:24397320-24397812 plot gorGor4
247 2009 haeCon1 tbd tbd 25 39 1031   10 1745 58, 10, Hcon_Contig0056815:13389-13514 plot haeCon1
248 2013 haeCon2 tbd tbd 5378 149 831727   55 351011 700, 1, scaffold_63:260903-262303 plot haeCon2
249 2014 halAlb1 GCF_000691405.1 SOAPdenovo v. 1.6 11 126 1936   370 3807 466, 102, KK641449:26277-27310 plot halAlb1
250 2014 halLeu1 GCF_000737465.1 SOAPdenovo2 v. May 2014 14 280 4342   95 1676 194, 10, KL869356:8708537-8708934 plot halLeu1
251 2011 hapBur1 GCF_000239415.1 ALLPATHS-LG v. R35951 965 95 135908   20 374038 975, 20, JH425754:7557-9526 plot hapBur1
252 2011 hetBac1 GCA_000223415.1 Celera assembler v. 6.0 3 228 1282   20 60 1000, 20, GL996479v1:885362-887381 plot hetBac1
253 2011 hetGla1 tbd tbd 743 313 285174   1994 2914751 785, 43, JH165660:4306-5918 plot hetGla1
254 2012 hetGla2 GCF_000247695.1 AllPaths v. R39605 595 70 44604   100 201552 1000, 100, JH602085:17402968-17405067 plot hetGla2
255 2009 hg19 tbd tbd 1 200 200   3000000 3000000 200, 3000000, chrY:10104354-13104753 plot hg19
256 2013 hg38 GCF_000001405.26 tbd 12 78 974   440 56689 125, 20, chrUn_KI270442v1:175618-175887 plot hg38
259 2012 jacJac1 GCF_000280705.1 ALLPATHS v. R41689 HAPLOIDIFY=True 2666 63 196366   100 569918 1000, 100, JH725440:52488719-52490818 plot jacJac1
260 2011 latCha1 GCF_000225785.1 AllPaths v. R36819 2038 77 159059   100 504858 955, 100, JH127253:476850-478859 plot latCha1
262 2014 lepDis1 GCF_000691785.1 SOAPdenovo v. 1.6 1 50 50   229 229 50, 229, KK681583:9399-9727 plot lepDis1
263 2011 lepOcu1 GCF_000242695.1 AllPaths v. R38293 2079 95 232474   100 466733 1000, 100, chrLG4:37780111-37782210 plot lepOcu1
264 2013 lepWed1 GCF_000349705.1 allpaths v. R41856 HAPLOIDIFY=True 2022 63 135843   100 1218867 1000, 100, KB715312:1023296-1025395 plot lepWed1
265 2013 letCam1 GCA_000466285.1 Newbler v. 2.7 1453 69 123952   100 739039 280, 39, KE994354:70338-70936 plot letCam1
266 1880 linHum0 GCF_000217595.1 CABOG v. 5.3 179 48 10176   100 20986 480, 100, NW_012159984:28893-29952 plot linHum0
267 2013 lipVex1 GCF_000442215.1 SOAPdenovo v. 2.01 292 92 66483   985.5 386576 876, 10, KE557659:158624-160385 plot lipVex1
268 2012 loaLoa1 GCA_000183805.3 Newbler v. 2.1-PreRelease-4/28/2009 376 382 123384   215 94547 604, 20, JH712068v1:803529-804756 plot loaLoa1
269 2005 loxAfr1 tbd tbd 79 44 11426   206 80801 687, 284, scaffold_10531:71539-73196 plot loxAfr1
270 2008 loxAfr2 tbd tbd 78 165.5 20735   1078 180887 989, 100, scaffold_3386:17920-19997 plot loxAfr2
271 2009 loxAfr3 GCF_000001905.1 tbd 11 45 1924   398 9784 731, 100, scaffold_211:333226-334787 plot loxAfr3
272 2007 macEug1 tbd tbd 7319 57 504656   10 562759 146, 1, Scaffold27901:25044-25336 plot macEug1
273 2009 macEug2 GCA_000004035.1 tbd 11689 55 752361   50 1102638 146, 1, GL058785:13153-13445 plot macEug2
274 2013 macFas5 GCF_000364345.1 SOAPdenovo v. 1.0.5, SRPRISM v. 2.4; ARGO v. 0.1 1138 106.5 145024   204.5 1039415 849, 10, chr14:81860376-81862083 plot macFas5
275 2015 macNem1 GCF_000956065.1 AllPathsLG v. 48744; Atlas Link v. 1.1; Atlas GapFill v. 2.2; PBJelly2 v. 14.9.9 1828 95 237662   50 834836 982, 25, NW_012016132v1:18826350-18828338 plot macNem1
276 2014 manPen1 GCA_000738955.1 SOAPdenovo v. May 2014 37129 101 5536376   1 13090743 1000, 1, KN006700:349054-351054 plot manPen1
277 2014 manVit1 GCF_000692015.1 SOAPdenovo v. 1.6 25 231 8844   1303 65245 701, 296, KK732740:655429-657126 plot manVit1
279 2012 mayZeb1 GCF_000238955.1 AllPaths v. R37043 1831 95 241336   100 682313 1000, 100, JH720538:3252564-3254663 plot mayZeb1
280 2013 megLyr1 GCA_000465345.1 CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 33 38 1716   1 185 83, 1, KI087181:1999-2165 plot megLyr1
281 2009 melGal1 tbd tbd 834 127 136229   100 661041 169, 1, chr3:54352580-54352918 plot melGal1
282 2014 melGal5 GCF_000146605.2 MaSuRCA v. 1.9.2 84 181 17431   100 76065 724, 100, chrZ:7873702-7875249 plot melGal5
285 2008 melInc2 tbd tbd 3 77 211   201 513 98, 201, MiV1ctg3:286050-286446 plot melInc2
286 2011 melUnd1 GCF_000238935.1 Celera v. 6.1 39 89 5925   41 36796 334, 20, JH556232:114057-114744 plot melUnd1
287 2014 merNub1 GCF_000691845.1 SOAPdenovo v. 1.6 2 154.5 309   361 722 245, 311, KK701714:10568-11368 plot merNub1
288 2013 mesAur1 GCF_000349665.1 allpaths v. R44683 3589 71 248381   100 755166 212, 100, KB708269:3930600-3931123 plot mesAur1
289 2014 mesUni1 GCF_000695765.1 SOAPdenovo v. 1.6 4 347 1434   124.5 451 332, 23, KK817080:7082-7768 plot mesUni1
290 1880 micMur0 tbd tbd 295 256 90483   780 749299 997, 100, GeneScaffold_4747:166512-168605 plot micMur0
291 2007 micMur1 GCA_000165445.1 tbd 124 124.5 33320   952.5 207469 969, 100, scaffold_5185:107104-109141 plot micMur1
292 2015 micMur2 GCF_000165445.1 AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9 774 90 85250   50 267164 999, 25, KQ057470v1:2292330-2294352 plot micMur2
293 2017 micMur3 GCF_000165445.2 AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9; Lachesis v. shendurelab-LACHESIS-2151de9; BioNano IrysSolve v. 2.1 325 95 73918   50 262987 898, 10, chr2:108635511-108637316 plot micMur3
294 2012 micOch1 GCF_000317375.1 allpaths v. R41985 HAPLOIDIFY=True SPRS_WRITE_SEPS=True 6788 65 483435   100 1507707 993, 100, chr6:54381083-54383168 plot micOch1
295 2011 mm10 tbd tbd 2 390.5 781   25879.5 51759 477, 1759, chrX_GL456233_random:239940-242652 plot mm10
296 1880 mm5 tbd tbd 204 48.5 30180   100 76884 921, 100, chr6:132460596-132462537 plot mm5
297 2005 mm6 tbd tbd 117 48 17647   100 48212 768, 100, chr14:100566071-100567706 plot mm6
298 2005 mm7 tbd tbd 45 48 5475   100 64491 451, 100, chr15:68974498-68975499 plot mm7
299 2006 mm8 tbd tbd 6 161 1257   162.5 50878 520, 353, chr14:87009574-87010966 plot mm8
300 2007 mm9 tbd tbd 2 390.5 781   25879.5 51759 477, 1759, chrX_random:239940-242652 plot mm9
301 2004 monDom1 tbd tbd 18 53.5 1891   127 11341 696, 100, scaffold_14754:178069-179560 plot monDom1
302 2005 monDom2 tbd tbd 5 428 2012   100 520 870, 100, scaffold_38:23849795-23851634 plot monDom2
303 2006 monDom4 tbd tbd 9 183 3070   1000 21732 870, 1, chr1:400420041-400421781 plot monDom4
304 2006 monDom5 tbd tbd 9 183 3070   1000 21732 870, 1, chr1:424248968-424250708 plot monDom5
305 2013 musDom2 GCF_000371365.1 AllPathsLG v. September 2012 1284 85 165577   1 473996 1000, 1, KB855954:134298-136298 plot musDom2
306 2011 musFur1 GCA_000215625.1 ALLPATHS-LG v. R36167 1009 84 107706   44 286510 1000, 20, GL897138:9717-11736 plot musFur1
307 2013 myoBra1 GCF_000412655.1 SOAP de novo v. 2.04 356 119 85889   1109 766318 1000, 31, KE163605:2655193-2657223 plot myoBra1
308 2012 myoDav1 GCF_000327345.1 SOAPdenovo v. 1.06 303 151 56967   1283 942238 502, 19, KB106370:3092722-3093744 plot myoDav1
309 2006 myoLuc1 tbd tbd 42 47 6392   1551 125787 388, 100, scaffold_150441:136761-137636 plot myoLuc1
310 2010 myoLuc2 GCF_000147115.1 Arachne v. Dev. Jan 2010 7 39 357   410 3363 75, 119, GL429781:8032929-8033197 plot myoLuc2
311 2014 nanGal1 GCF_000622305.1 SOAPdenovo v. 2.04.4 730 126 149781   902.5 980462 740, 12, KL200152:4088120-4089611 plot nanGal1
312 2015 nanPar1 GCA_000935625.1 SOAPdenovo v. 1.06 1716 194 477991   974 2590489 552, 12, KN907832v1:31307-32422 plot nanPar1
313 2014 nasLar1 GCA_000772465.1 phredPhrap v. 1.080812 614 43 93736   7 126885 117, 1, chr1:6190345-6190579 plot nasLar1
314 2013 necAme1 GCF_000507365.1 Newbler v. MapAsmResearch-04/19/2010-patch-08/17/2010 459 54 28538   100 92887 366, 100, KI657476v1:37386-38217 plot necAme1
315 2007 nemVec1 tbd tbd 25 378 10288   829 17106 769, 1, scaffold_3968:6459-7997 plot nemVec1
316 2011 neoBri1 GCF_000239395.1 ALLPATHS-LG v. R36800 5040 95 1321574   20 665865 998, 20, JH422308:3325010-3327025 plot neoBri1
317 2014 nipNip1 GCF_000708225.1 SOAPdenovo v. 1.6 41 154 11937   1090 77358 514, 15, KL411148:2104426-2105468 plot nipNip1
318 2010 nomLeu1 tbd tbd 859 141 220161   532 1139352 999, 100, GL397299:16863535-16865632 plot nomLeu1
319 2011 nomLeu2 tbd tbd 859 141 220161   532 1139352 999, 100, GL397299:16863535-16865632 plot nomLeu2
320 2012 nomLeu3 GCA_000146795.3 tbd 861 141 220464   519 1139552 999, 100, chr5:41669854-41671951 plot nomLeu3
321 2014 notCor1 GCF_000735185.1 Celera Assembler v. 7.0 174 91.5 17942   51 21717 407, 1, KL665414:596304-597118 plot notCor1
322 1880 ochPri0 tbd tbd 569 101 138948   1065 1840608 994, 100, GeneScaffold_4726:276480-278567 plot ochPri0
323 2008 ochPri2 GCA_000164825.1 tbd 313 55 35317   1365 1110261 967, 100, scaffold_3914:61889-63922 plot ochPri2
324 2012 ochPri3 GCF_000292845.1 Allpaths v. R41206 1958 69 148238   100 499781 890, 100, JH802177:1348834-1350713 plot ochPri3
325 2012 octDeg1 GCF_000260255.1 allpaths v. R40507 LITTLE_HELPS_BIG=False 2582 68 231489   100 464548 985, 100, JH651571:12809669-12811738 plot octDeg1
326 2013 odoRosDiv1 GCA_000321225.1 AllPaths v. 41070; Atlas-link v. 1.0; Atlas-gapfill v. 2.2 2581 68 180258   50 263661 970, 50, KB229427:1083192-1085181 plot odoRosDiv1
327 2013 oncVol1 GCA_000499405.1 tbd 10 89.5 2046   1 18211 739, 1, HG738137v1:12037947-12039425 plot oncVol1
328 2014 opiHoa1 GCF_000692075.1 SOAPdenovo v. 1.6 80 170.5 23360   1723.5 216549 855, 28, KK733898:82987-84724 plot opiHoa1
329 2013 orcOrc1 GCF_000331955.2 AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2 2677 66 181922   50 357696 943, 50, NW_004438742v1:126518-128453 plot orcOrc1
330 2011 oreNil1 tbd tbd 1903 93 208888   20 734264 969, 20, GL831201:3474999-3476956 plot oreNil1
331 2007 ornAna1 GCF_000002275.2 tbd 793 49 70053   103 148119 718, 10, Contig3645:38619-40064 plot ornAna1
332 2007 ornAna2 GCA_000002275.2 tbd 793 49 70053   103 148119 718, 10, chrUn_DS182721v1:38619-40064 plot ornAna2
333 2012 oryAfe1 GCF_000298275.1 allpaths v. R40776 LITTLE_HELPS_BIG=False 3595 65 293465   100 691489 998, 100, JH863829:9451309-9453404 plot oryAfe1
334 2005 oryCun1 tbd tbd 122 278.5 44566   462.5 91832 978, 100, scaffold_172390:787-2842 plot oryCun1
335 2009 oryCun2 GCF_000003625.3 tbd 12 44.5 836   446 9055 327, 185, chr13:6520795-6521633 plot oryCun2
336 2006 oryLat1 tbd tbd 141 144 25310   10 215389 561, 10, chrUn:20300712-20301843 plot oryLat1
337 2005 oryLat2 tbd tbd 141 144 25310   10 253399 445, 10, ultracontig221:437957-438856 plot oryLat2
339 2011 otoGar3 GCF_000181295.1 ALLPATHS-LG v. R35710 3569 86 332700   39 663694 985, 20, GL873641:2218538-2220527 plot otoGar3
340 2010 oviAri1 GCA_000005525.1 tbd 5934 53 394316   37 1966190 264, 1, chr15:8985870-8986398 plot oviAri1
341 2012 oviAri3 GCF_000298735.1 SOAPdenovo v. 1.03 149 193 51933   215 178445 46, 3, chr3:3466521-3466615 plot oviAri3
342 2015 oxyTri2 tbd tbd 523 37 30028   50 25856 186, 1, chrMACsb310:15510646-15511018 plot oxyTri2
343 2013 panHod1 GCF_000400835.1 SOAPdenovo v. 2.1 321 129 65178   1092 702884 628, 10, KE118776:1218541-1219806 plot panHod1
344 2012 panPan1 GCF_000258655.1 Celera Assembler v. 5.4.3 63 133 11209   20 22114 33, 1, JH650468:842203-842269 plot panPan1
345 2015 panPan2 tbd tbd 70 160 13388   20 1045522 35, 1, chr4:127787143-127787213 plot panPan2
346 2013 panRed1 GCA_000341325.1 Velvet v. 1.2.07 123 56 6626   10 3069 62, 10, KB454926:42673-42806 plot panRed1
347 2013 panTig1 GCF_000464555.1 SOAPdenovo v. 08-Jul-2011 59 111 12591   700 69429 398, 9, KE721804:6447970-6448774 plot panTig1
348 2003 panTro1 tbd tbd 5719 388 2244063   100 3504041 998, 100, chr6:137473031-137475126 plot panTro1
349 2006 panTro2 tbd tbd 692 52 62006   240 238273 717, 10, chr10_random:5205395-5206838 plot panTro2
350 2010 panTro3 tbd tbd 472 54 44241   238.5 180280 908, 10, chr2B:124438762-124440587 plot panTro3
351 2011 panTro4 GCF_000001515.6 tbd 472 54 44241   238.5 180280 908, 10, chr2B:124438762-124440587 plot panTro4
352 2016 panTro5 GCF_000001515.7 DiscoVar v. 51280; PBJelly v. 14.9.9 2937 199 537385   100 3625772 199, 10, chr12_NW_015974005v1_random:1130-1537 plot panTro5
353 2012 papAnu2 GCF_000264685.1 CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0 727 138 144060   50 96682 46, 1, chr4:20965571-20965663 plot papAnu2
354 2008 papHam1 tbd tbd 22041 56 1338445   50 2303596 376, 50, scaffold4259:86690-87491 plot papHam1
355 2014 pelCri1 GCF_000687375.1 SOAPdenovo v. 1.6 3 72 517   186 808 386, 173, KK471910:16412-17356 plot pelCri1
356 2011 pelSin1 GCF_000230535.1 SOAPdenovo v. 1.05 126 138 35062   411.5 167243 398, 10, JH212629:287260-288065 plot pelSin1
357 2013 perManBai1 GCF_000500345.1 Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0 7908 80 846184   50 1552640 1000, 50, KI615759:2266069-2268118 plot perManBai1
358 2007 petMar1 tbd tbd 542 47 48234   10 42185 746, 10, Contig3178:18125-19626 plot petMar1
359 2010 petMar2 GCA_000148955.1 Arachne v. 3.2 31 86 5681   732 39461 617, 100, GL479790:15647-16980 plot petMar2
360 2014 phaCar1 GCF_000708925.1 SOAPdenovo v. 1.6 2 206 412   79 158 261, 100, KL416242:66648-67269 plot phaCar1
361 2014 phaLep1 GCF_000687285.1 SOAPdenovo v. 1.6 14 179 2930   310 4227 343, 85, KK448216:3226-3996 plot phaLep1
362 2014 phoRub1 GCA_000687265.1 SOAPdenovo v. 1.6 4 288.5 1016   195.5 823 373, 83, KK425162:48893-49721 plot phoRub1
363 2013 phyCat1 GCF_000472045.1 AllPaths-LG v. January 2013 684 82.5 86555   100 130377 1000, 1, KI402232:538054-540054 plot phyCat1
364 2014 picPub1 GCF_000699005.1 SOAPdenovo v. 1.6 59 83 12175   970 106482 111, 28, KL217012:74310-74559 plot picPub1
365 2013 poeFor1 GCF_000485575.1 AllPaths-LG v. July 2013 848 75 84492   1 328834 972, 1, KI520524:847-2791 plot poeFor1
366 2014 poeRet1 tbd tbd 1124 87 157426   1 421252 988, 1, chrLG12:26078504-26080480 plot poeRet1
367 1880 ponAbe1 tbd tbd 1528 40 90824   133.5 275853 662, 10, Contig208:1185633-1186966 plot ponAbe1
368 2007 ponAbe2 tbd tbd 2239 54 444541   100 829820 769, 1, chr11:46659515-46661053 plot ponAbe2
369 2014 priExs1 tbd tbd 49 121 12100   1773 95166 181, 38, scaffold470:42605-43004 plot priExs1
370 2007 priPac1 tbd tbd 121 49 10688   209 31254 90, 1, chrUn:114913780-114913960 plot priPac1
372 2014 priPac3 tbd tbd 168 49.5 13153   274.5 50322 90, 1, Ppa_Contig2432:805-985 plot priPac3
373 2008 proCap1 GCA_000152225.1 Arachne v. before 2009 116 38 5205   534.5 65619 53, 100, scaffold_8867:32393-32598 plot proCap1
374 2013 pseHum1 GCF_000331425.1 SOAPdenovo v. 1.5 775 142 173055   10 547111 1000, 10, KB221227:5459003-5461012 plot pseHum1
375 2012 pteAle1 GCA_000325575.1 SOAPdenovo v. 1.06 97 127 19728   1023 161616 421, 16, KB031157:14150143-14151000 plot pteAle1
376 2014 pteGut1 GCF_000699245.1 SOAPdenovo v. 1.6 1 282 282   720 720 282, 720, KL237369:530-1813 plot pteGut1
377 2013 ptePar1 GCA_000465405.1 CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 3 31 102   1 3 40, 1, KE827285:1815-1895 plot ptePar1
378 2008 pteVam1 GCA_000151845.1 tbd 68 43.5 9173   301.5 27212 971, 100, scaffold_4327:120126-122167 plot pteVam1
379 2011 punNye1 GCF_000239375.1 ALLPATHS-LG v. R37016 1574 95 242736   20 332782 992, 20, JH419321:67178-69181 plot punNye1
380 2014 pygAde1 GCA_000699105.1 SOAPdenovo v. 1.6 42 113 7740   1160.5 93198 78, 17, KL224983:2418932-2419104 plot pygAde1
381 2013 pytBiv1 GCF_000186305.1 Soap deNovo v. March 2012 21222 101 2315791   99 2845128 649, 10, KE957835:3697-5004 plot pytBiv1
386 2005 rheMac1 tbd tbd 2816 39 116369   50 214725 205, 50, SCAFFOLD120616:17732-18191 plot rheMac1
387 2010 rheMac3 GCA_000230795.1 SOAPdenovo v. 1.0 288 192.5 71777   1140.5 887215 949, 27, chr15:33329332-33331256 plot rheMac3
388 2015 rheMac8 GCF_000772875.2 MaSuRCA v. 1.8.3; PBJelly2 v. 14.9.9 80 99.5 20122   917 437685 823, 20, chr7:1436259-1437924 plot rheMac8
389 2016 rhiBie1 GCF_001698545.1 Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12 4262 228 1007049   1 2148972 965, 1, NW_016817388v1:689035-690965 plot rhiBie1
390 2013 rhiFer1 GCA_000465495.1 CLC NGS Cell v. 3.20.50819; SOAPdenovo v. 1.05 2 42.5 85   1 2 45, 1, KI143993:8550-8640 plot rhiFer1
391 2014 rhiRox1 GCF_000769185.1 SOAPdenovo v. 2013.04 187 158 50999   529 184770 584, 11, KN296100v1:378785-379963 plot rhiRox1
392 1880 ricCom1 GCF_000151685.1 tbd 41 332 13808   738 38675 787, 3, EQ973819:99412-100988 plot ricCom1
393 2003 rn3 tbd tbd 574 143 146802   50 425043 72, 1, chr4:1247786-1247930 plot rn3
394 2004 rn4 tbd tbd 567 141 142452   50 424693 72, 1, chr4:1247786-1247930 plot rn4
395 2012 rn5 tbd tbd 64 516 32231   50 28921 712, 1, chr3:45275318-45276742 plot rn5
396 2014 rn6 GCF_000001895.5 Atlas Assembly suite v. 2.0; CLCbio v. 1.0; Velvet v. 1.0; PBjelly v. 2.0 719 290 280406   50 1258566 712, 1, chr3:40184108-40185532 plot rn6
401 2011 saiBol1 GCA_000235385.1 AllPaths v. R37830 1541 77 139356   100 303093 1000, 100, JH378136:528784-530883 plot saiBol1
403 2011 sarHar1 GCF_000189315.1 Phusion2 v. 1.0 17494 220 2993318   158 6574378 958, 10, chr1_GL834475_random:882665-884590 plot sarHar1
404 2013 sebNig1 GCA_000475235.1 tbd 168 55.5 11782   54.5 11235 82, 2, KI499294:4621-4786 plot sebNig1
405 2013 sebRub1 GCA_000475215.1 SOAPdenovo v. 1.05 119 55 9711   51 8253 142, 1, KI444651:3586-3870 plot sebRub1
406 2014 serCan1 GCF_000534875.1 tbd 213 97 36640   20 33876 971, 1, HG009242:4536330-4538272 plot serCan1
407 2006 sorAra1 tbd tbd 229 330 79670   100 75086 895, 100, scaffold_247593:25660-27549 plot sorAra1
408 2008 sorAra2 GCF_000181275.1 Allpaths v. R41070 3389 75 359891   100 822102 992, 100, JH798160:15867029-15869112 plot sorAra2
409 2008 speTri1 tbd tbd 99 46 12167   879 197520 835, 100, scaffold_1259:158788-160557 plot speTri1
410 2011 speTri2 GCF_000236235.1 ALLPATHS v. R37591 2964 95 353556   100 565083 1000, 100, JH393486:3045059-3047158 plot speTri2
411 2014 stePar1 GCF_000690725.1 ALLPATHS-LG v. August 2013 554 65 47063   1 120402 952, 1, KK580894:321554-323458 plot stePar1
412 1880 strCam0 tbd tbd 20 243 7267   836.5 40260 184, 13, superscaffold45:7169362-7169742 plot strCam0
413 2014 strCam1 GCF_000698965.1 SOAPdenovo v. 1.6 19 246 7125   759 39346 184, 13, KL206666:4120006-4120386 plot strCam1
414 2005 strPur1 tbd tbd 1291 153 303896   50 238579 89, 1, Scaffold16400:576-754 plot strPur1
415 2006 strPur2 tbd tbd 367 55 25281   50 79238 35, 1, Scaffold12735:108654-108724 plot strPur2
416 2009 strPur3 tbd tbd 989 56 64991   96 187408 35, 1, Scaffold740:110486-110556 plot strPur3
417 2011 strPur4 GCF_000002235.3 Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement 1612 100 326953   50 206009 425, 3, Scaffold112:361603-362455 plot strPur4
419 2014 strRat2 GCA_001040885.1 tbd 2 54.5 109   6 12 67, 1, chrUn_LN609483v1:243-377 plot strRat2
421 2009 susScr1 tbd tbd 371 43 34151   100 66500 986, 100, chr2:139016697-139018768 plot susScr1
422 2009 susScr2 tbd tbd 371 43 34151   100 66500 986, 100, chr2:139016697-139018768 plot susScr2
423 1880 taeGut0 tbd tbd 212 45 20495   442 116920 624, 10, Contig233:50949-52206 plot taeGut0
424 2008 taeGut1 tbd tbd 223 45 22373   100 22300 689, 100, chr21_random:54357-55834 plot taeGut1
425 2013 taeGut2 GCF_000151805.1 PCAP v. 2008 219 44 21273   100 21900 624, 100, chr27:56676-58023 plot taeGut2
427 2013 takFla1 GCA_000400755.1 HAPs v. 0.2.2 365 241 91817   788 407496 503, 1, KE121297:329-1335 plot takFla1
428 2013 tarIhg38 tbd tbd 12 78 974   440 56689 125, 20, chrUn_KI270442v1:175618-175887 plot tarIhg38
429 2008 tarSyr1 tbd tbd 331 70 45530   191 102767 892, 100, scaffold_111889:3660-5543 plot tarSyr1
430 2013 tarSyr2 GCF_000164805.1 Celera v. DEC-2012 189 56 17645   20 9572 1000, 20, KE939253v1:939796-941815 plot tarSyr2
431 2014 tauEry1 GCF_000709365.1 SOAPdenovo v. 1.6 1 50 50   394 394 50, 394, KL466072:20829-21322 plot tauEry1
432 2004 tetNig1 tbd tbd 64 272.5 21868   1000 53904 336, 59, chr5:807217-807947 plot tetNig1
433 2007 tetNig2 tbd tbd 70 298 25569   500 32404 336, 59, chr5:799217-799947 plot tetNig2
434 2014 tinGut1 GCF_000705375.1 SOAPdenovo v. 1.6 18 96 3855   1086 21982 519, 68, KL400865:236113-237218 plot tinGut1
435 2014 tinGut2 GCF_000705375.1 SOAPdenovo v. 1.6 18 96 3855   1086 21982 519, 68, KL895544:236113-237218 plot tinGut2
436 2005 triCas1 tbd tbd 75 100 8201   50 6900 214, 50, Contig5855_Contig1469:226794-227271 plot triCas1
437 2005 triCas2 tbd tbd 63 62 5442   50 313244 412, 50, chrUn_46:283716-284589 plot triCas2
438 2011 triMan1 GCF_000243295.1 AllPaths v. R38542 5748 75 527972   100 726640 1000, 100, JH594622:8537918-8540017 plot triMan1
439 2011 triSpi1 GCF_000181795.1 PCAP v. January 12, 2007 3 55 806   10 230 705, 10, GL622790v1:172202-173621 plot triSpi1
440 2014 triSui1 GCA_000701005.1 SOAPdenovo v. 2 37 138 7959   1449 82883 120, 68, KL363219v1:83933-84240 plot triSui1
442 2013 tupChi1 GCF_000334495.1 SOAPdenovo v. 1.05 914 220.5 290632   987.5 1823897 861, 16, KB320907:3306581-3308318 plot tupChi1
443 2008 turTru1 tbd tbd 112 41.5 15556   388 52461 993, 100, scaffold_108458:6669-8754 plot turTru1
444 2011 turTru2 GCF_000151865.2 Atlas, Atlas-Link, Atlas-GapFill v. June 2011 5612 70 466776   188.5 1979352 44, 1, JH496197:2095-2183 plot turTru2
445 2014 tytAlb1 GCF_000687205.1 SOAPdenovo v. 1.6 2 170 340   326 652 289, 220, KK379918:2163-2960 plot tytAlb1
446 2014 ursMar1 GCF_000687225.1 SOAPdenovo v. 1.05 205 41 12130   3384 708704 711, 49, KK498595:3401141-3402611 plot ursMar1
447 2007 venter1 tbd tbd 64 411.5 26995   100 64592 862, 20, chr2:102870978-102872721 plot venter1
448 2008 vicPac1 tbd tbd 221 251 71912   276 310711 993, 100, scaffold_812:411693-413778 plot vicPac1
449 2013 vicPac2 GCF_000164845.1 Newbler v. May-2012 1245 69 115488   369 430947 685, 20, KB632527:971889-973278 plot vicPac2
450 1880 vicVic1 tbd tbd 218 252.5 71401   263 309237 993, 100, scaffold_812:411693-413778 plot vicVic1
451 2016 xenLae2 GCF_001663975.1 Meraculous v. May-2013 2660 43 112843   265 1906995 50, 10, chr6S:105116072-105116181 plot xenLae2
452 2004 xenTro1 tbd tbd 140 177.5 37717   889.5 437093 94, 1, scaffold_26179:153-341 plot xenTro1
453 2005 xenTro2 tbd tbd 116 229.5 33928   806.5 320973 83, 1, scaffold_13788:6263-6429 plot xenTro2
454 2009 xenTro3 tbd tbd 116 229.5 33928   806.5 320973 83, 1, GL185958:6263-6429 plot xenTro3
455 2012 xenTro7 GCF_000004195.2 ARACHNE v. 20071016_modified 98 82.5 16149   201 69741 775, 100, KB022861:7377-9026 plot xenTro7
456 2016 xenTro9 GCF_000004195.3 Meraculous v. May-2013 172 105.5 27368   100 99243 775, 100, chrUn_NW_016684502v1:7377-9026 plot xenTro9
457 2012 xipMac1 GCF_000241075.1 PCAP v. 3/30/09; Newbler v. MapAsmResearch-02/17/2010 548 50 32896   131 334271 30, 1, JH556915:15756-15816 plot xipMac1
459 2013 zonAlb1 GCF_000385455.1 Allpaths-LG v. Feb-2013 538 79 50834   1 134738 990, 1, KB913055:7474487-7476467 plot zonAlb1

assemblies with zero duplicate gap sequences

count year dbName ncbiAsmId number of gaps assembly method
001 2012 aciBauTYTH_1 GCF_000302575.1 4 tbd
002 2006 afrOth13 tbd 220 tbd
003 2014 apaVit1 GCF_000703405.1 50921 SOAPdenovo v. 1.6
004 2006 borEut13 tbd 0 tbd
005 2014 bunEbo1 GCF_000889155.1 0 tbd
006 2010 caeJap3 tbd 0 tbd
007 2003 canFamPoodle1 GCA_000181415.1 0 tbd
008 2005 canHg12 tbd 0 tbd
009 2010 ce10 tbd 0 tbd
010 2013 ce11 GCF_000002985.6 0 tbd
011 2004 ce2 tbd 5 tbd
012 2005 ce3 tbd 0 tbd
013 2007 ce4 tbd 0 tbd
014 2007 ce5 tbd 0 tbd
015 2008 ce6 tbd 0 tbd
016 2009 ce7 tbd 0 tbd
017 2009 ce8 tbd 0 tbd
018 2010 ce9 tbd 0 tbd
019 2004 droMoj1 tbd 0 tbd
020 2014 eboVir1 tbd 2 tbd
021 2014 eboVir3 tbd 0 tbd
022 2006 euaGli13 tbd 19510 tbd
023 2006 eutHer13 tbd 304 tbd
024 1880 gasAsc0 GCA_000180675.1 0 tbd
025 2006 gliRes13 tbd 39623 tbd
026 2016 gorGor5 tbd 0 tbd
027 2006 homIni14 tbd 0 tbd
028 1880 homNea0 tbd 872 tbd
029 2006 lauRas13 tbd 31794 tbd
030 2014 marVir1 tbd 0 tbd
031 2008 melHap1 GCA_000172435.1 0 tbd
032 2008 melInc1 GCA_000180415.1 0 tbd
033 2006 otoGar1 tbd 0 tbd
034 2008 priPac2 GCA_000180635.1 59 tbd
035 2012 repBase0 tbd 2137 tbd
036 2012 repBase1 tbd 3623 tbd
037 1880 repBase2 tbd 3237 tbd
038 2014 resEbo1 GCF_000854085.1 0 tbd
039 2016 rouAeg1 GCF_001466805.2 638 SparseAssembler v. OCTOBER-2015; DBG2OLC v. OCTOBER-2015; LINKS v. 1.5.1; L_RNA_Scaffolder v. OCTOBER-2015; SSPACE v. 3.0
040 2003 sacCer1 tbd 0 tbd
041 2008 sacCer2 tbd 0 tbd
042 2011 sacCer3 GCF_000146045.2 0 tbd
043 1880 salMan0 tbd 0 tbd
044 2011 strRat1 tbd 3207 tbd
045 2014 sudEbo1 GCF_000855585.1 0 tbd
046 2014 taiEbo1 GCF_000888475.1 0 tbd
047 2006 tupBel1 tbd 0 tbd
048 2014 zaiEbo1 GCF_000848505.1 0 tbd
Retrieved from "https://genomewiki.ucsc.edu/index.php?title=GapOverlap&oldid=23994"