Search robot: Difference between revisions
No edit summary |
No edit summary |
||
| Line 19: | Line 19: | ||
NC_001807 hg18 1<BR> | NC_001807 hg18 1<BR> | ||
ctgPos chrM 0 16571 NC_001807<BR> | ctgPos chrM 0 16571 NC_001807<BR><BR> | ||
AP006221.1 hg18 1<BR> | AP006221.1 hg18 1<BR> | ||
clonePos chr1 0 36744 AP006221.1<BR> | clonePos chr1 0 36744 AP006221.1<BR><BR> | ||
rs3 hg18 2<BR> | rs3 hg18 2<BR> | ||
snp126 chr13 31344591 31345092 rs3<BR> | snp126 chr13 31344591 31345092 rs3<BR> | ||
Revision as of 16:31, 11 July 2007
One of the robots that runs automatically during the CGI Build Process, is the testSearch robot.
The code is kent/src/hg/qa/testSearch.c.
testSearch - test search functionality. usage:
testSearch inputFile
The input format is:
<search term> <database> <count of expected results> followed by a line for each of the expected results
Each expected result line looks like:
<tablename> <chrom> <chromStart> <chromEnd> <actual search match>
I keep an example in kent/src/hg/qa/search1.txt (and this is what the build robot uses):
NC_001807 hg18 1
ctgPos chrM 0 16571 NC_001807
AP006221.1 hg18 1
clonePos chr1 0 36744 AP006221.1
rs3 hg18 2
snp126 chr13 31344591 31345092 rs3
snp127 chr13 31344591 31345092 rs3
Since snp127 is only on hgwdev, this example only works there.
The HapMap SNPs examples need to be added.
