Hg19 conservation lastz parameters: Difference between revisions

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==do not edit, automatically generated table==
==do not edit, automatically generated table==
<TABLE BORDER=1>
<TABLE BORDER=1>
<TR><TH>query</TH>
<TR><TH>query</TH>
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   <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>


   <TD>2009-05-26</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2009-05-26</TD><TD ALIGN=RIGHT>34.376%</TD>
</TR><TR>
</TR><TR>
   <TH>Kangaroo rat&nbsp;dipOrd1</TH>
   <TH>Kangaroo rat&nbsp;dipOrd1</TH>
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   <TH>Tenrec&nbsp;echTel1</TH>
   <TH>Tenrec&nbsp;echTel1</TH>
   <TD COLSPAN=13 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>
 
  <TD>in progress</TD><TD ALIGN=RIGHT>in progress</TD>
</TR><TR>
</TR><TR>
   <TH>Elephant&nbsp;loxAfr2</TH>
   <TH>Elephant&nbsp;loxAfr2</TH>
   <TD COLSPAN=13 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
  <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>
 
  <TD>in progress</TD><TD ALIGN=RIGHT>in progress</TD>
</TR><TR>
</TR><TR>
   <TH>Armadillo&nbsp;dasNov2</TH>
   <TH>Armadillo&nbsp;dasNov2</TH>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>no</TD><TD>50</TD><TD>3000</TD><TD>3000</TD><TD>default</TD>
   <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>
   <TD>9400</TD><TD>lastz</TD><TD>30</TD><TD>0</TD><TD>400</TD><TD>1</TD>
  <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>


  <TD>2009-05-27</TD><TD ALIGN=RIGHT>N/A</TD>
</TR><TR>
</TR><TR>
   <TH>Opossum&nbsp;monDom5</TH>
   <TH>Opossum&nbsp;monDom5</TH>
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</TR><TR>
</TR><TR>
   <TH>Platypus&nbsp;ornAna1</TH>
   <TH>Platypus&nbsp;ornAna1</TH>
   <TD COLSPAN=13 ALIGN=center>TBD</TD>
   <TD>no</TD><TD>40M</TD><TD>2200</TD><TD>6000</TD><TD>HoxD55.q</TD>
  <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
 
  <TD>2009-05-27</TD><TD ALIGN=RIGHT>7.627%</TD>
</TR><TR>
</TR><TR>
   <TH>Chicken&nbsp;galGal3</TH>
   <TH>Chicken&nbsp;galGal3</TH>
   <TD>yes</TD><TD>40M</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD>
   <TD>yes</TD><TD>40M</TD><TD>2200</TD><TD>10000</TD><TD>HoxD55.q</TD>
   <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>2009-05-14</TD><TD ALIGN=RIGHT>3.591%</TD>
   <TD>2009-05-14</TD><TD ALIGN=RIGHT>3.591%</TD>
</TR><TR>
</TR><TR>
   <TH>Zebra finch&nbsp;taeGut1</TH>
   <TH>Zebra finch&nbsp;taeGut1</TH>
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   <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>


   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2009-05-27</TD><TD ALIGN=RIGHT>3.176%</TD>
</TR><TR>
</TR><TR>
   <TH>Zebrafish&nbsp;danRer5</TH>
   <TH>Zebrafish&nbsp;danRer5</TH>
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   <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>
   <TD>3400</TD><TD>lastz</TD><TD>30</TD><TD>2000</TD><TD>400</TD><TD>1</TD>


   <TD>N/A</TD><TD ALIGN=RIGHT>N/A</TD>
   <TD>2009-05-26</TD><TD ALIGN=RIGHT>2.562%</TD>
</TR><TR>
</TR><TR>
   <TH>Tetraodon&nbsp;tetNig1</TH>
   <TH>Tetraodon&nbsp;tetNig1</TH>

Revision as of 23:26, 27 May 2009

See Also:

do not edit, automatically generated table

query abridged
repeats(no)		 M(40M)K(3000) L(3000)QY(9400) program
run		E(30)H(0) O(400)T(1) chain table
date		 % of hg19
matched
(chainLink table)
Chimp panTro2 no25445003000human_chimp.v2.q 15000lastz15006002 2009-03-2094.846%
Gorilla gorGor1 no25445003000human_chimp.v2.q 15000lastz15006002 2009-03-2259.484%
Orangutan ponAbe2 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-1491.350%
Rhesus rheMac2 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-1482.744%
Baboon papHam1 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-2082.810%
Marmoset calJac1 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-1470.860%
Tarsier tarSyr1 no40M30003000default 9400lastz3004001 2009-05-1547.830%
Bushbaby otoGar1 no40M30003000default 9400lastz3004001 2009-05-1543.644%
Mouse lemur micMur1 no40M30003000default 9400lastz3004001 2009-05-2246.519%
TreeShrew tupBel1 TBD
Shrew sorAra1 TBD
Mouse mm9 yes40M30003000default 9400lastz3004001 2009-05-1335.299%
Rat rn4 yes40M30003000default 9400lastz3004001 2009-05-1332.879%
Squirrel speTri1 no40M30003000default 9400lastz3004001 2009-05-1535.712%
Guinea Pig cavPor3 no40M30003000default 9400lastz3004001 2009-05-22N/A
Rabbit oryCun1 TBD
Pika ochPri2 TBD
Hedgehog eriEur1 TBD
Cat felCat3 no40M30003000default 9400lastz3004001 2009-05-1435.717%
Dog canFam2 yes40M30003000default 9400lastz3004001 2009-05-1452.879%
Horse equCab2 no40M30003000default 9400lastz3004001 2009-05-2257.051%
Alpaca vicPac1 TBD
Megabat pteVam1 no40M30003000default 9400lastz3004001 2009-05-2145.416%
Microbat myoLuc1 no40M30003000default 9400lastz3004001 N/AN/A
Dolphin turTru1 no40M30003000default 9400lastz3004001 N/AN/A
Cow bosTau4 no40M30003000default 9400lastz3004001 2009-05-2146.507%
Sloth choHof1 no40M30003000default 9400lastz3004001 2009-05-2634.376%
Kangaroo rat dipOrd1 TBD
Rock hyrax proCap1 no5030003000default 9400lastz3004001 2009-05-2630.864%
Wallaby macEug1 TBD
Armadillo dasNov1 TBD
Tenrec echTel1 no5030003000default 9400lastz3004001 in progressin progress
Elephant loxAfr2 no5030003000default 9400lastz3004001 in progressin progress
Armadillo dasNov2 no5030003000default 9400lastz3004001 2009-05-27N/A
Opossum monDom5 no5022006000HoxD55.q 3400lastz3004001 N/AN/A
Platypus ornAna1 no40M22006000HoxD55.q 3400lastz3020004001 2009-05-277.627%
Chicken galGal3 yes40M220010000HoxD55.q 3400lastz3020004001 2009-05-143.591%
Zebra finch taeGut1 no40M220010000HoxD55.q 3400lastz3020004001 2009-05-263.496%
Lizard anoCar1 no40M22006000HoxD55.q 3400lastz3020004001 N/AN/A
X. tropicalis xenTro2 no40M22006000HoxD55.q 3400lastz3020004001 2009-05-273.176%
Zebrafish danRer5 no40M22006000HoxD55.q 3400lastz3020004001 2009-05-262.562%
Tetraodon tetNig1 no5022006000HoxD55.q 3400lastz3004001 2009-05-142.003%
Fugu fr2 no5022006000HoxD55.q 3400lastz3004001 2009-05-201.702%
Stickleback gasAcu1 no5022006000HoxD55.q 3400lastz3004001 2009-05-141.916%
Medaka oryLat2 no5022006000HoxD55.q 3400lastz3004001 2009-05-221.849%
Lamprey petMar1 no5022006000HoxD55.q 3400lastz3004001 2009-05-141.082%
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