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| ''This is a rough draft for now''
| | This page is no longer maintained. |
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| == QA checklist for tracks on the cancer browser ==
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| * Tracks can have both Chromosomes and Genesets as display options, check both
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| ** Occasionally tracks will work in one but not the other, but give no warning of this (or only a little tiny on on their details pages)
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| * Speed. Does it take a long time for a dataset to load? Indicating there is no down-sampled data table, or data table is not indexed.
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| * Is there data on every chromosome? Any missing sections should be accounted for.
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| * Do the colors look okay? Are there any visual issues with the track?
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| * Does the clickthrough to the Genome Browser worK?
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| * Test mostly using heatmap, but remember to check Boxplot and Proportions modes as well
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| * Clinical data: Features and Feature Settings:
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| **How many features are on by default? Too many will cause feature names not to display
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| **Does sorting features work? Does sorting features properly sort the heatmap?
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| **Use features to sanity-check data. Does gender match with X/Y, that sort of thing
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| **View Feature info by using the blue button next to the Feature graph. Here, check for:
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| ***Feature values: do they match what gets graphed? Do they make sense? Sometimes non-numerical values get made into a numerical scale, for example.
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| ***Do the Feature short labels match up with their names?
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| ***Are there repeated features, or features with meaningless info (ie gender in an Ovarian tumor dataset)
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| *** Stats function: Run one or two statistical tests. Keep in mind that you have to designate subgroups in order for the function to work
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| * Data track documentation: it's bad. The details page should have some minor info, like wrangler, date, number of samples, and a list of features in no particularly useful order
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| [[Category:Browser QA]]
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