Fr3 conservation alignment: Difference between revisions
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<TD ALIGN=RIGHT>2010-06-07</TD> | <TD ALIGN=RIGHT>2010-06-07</TD> | ||
<TD ALIGN=RIGHT>2009-09-02</TD> | <TD ALIGN=RIGHT>2009-09-02</TD> | ||
<TD> | <TD>2011-12-01</TD><TD ALIGN=RIGHT>70.912%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile tilapia</TD> | <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/tilapia/Orenil1/ 03]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil1 oreNil1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AERX01 Oreochromis<BR>niloticus]</TD><TD>Nile tilapia</TD> | ||
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<TD ALIGN=RIGHT>2011-11-30</TD> | <TD ALIGN=RIGHT>2011-11-30</TD> | ||
<TD ALIGN=RIGHT>2011-11-30</TD> | <TD ALIGN=RIGHT>2011-11-30</TD> | ||
<TD> | <TD>2011-12-02</TD><TD ALIGN=RIGHT>57.240%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD> | <TH>[ftp://ftp.broadinstitute.org/pub/assemblies/fish/stickleback/gasAcu1/ 04]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=gasAcu1 gasAcu1]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AANH01 Gasterosteus<BR>aculeatus]</TD><TD>Stickleback</TD> | ||
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<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD> | <TD>2011-12-02</TD><TD ALIGN=RIGHT>55.527%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD> | <TH>[http://dolphin.lab.nig.ac.jp/medaka/index.php 05]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=oryLat2 oryLat2]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=BAAE01 Oryzias<BR>latipes]</TD><TD>Medaka</TD> | ||
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<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD ALIGN=RIGHT>2009-08-15</TD> | <TD ALIGN=RIGHT>2009-08-15</TD> | ||
<TD> | <TD>2011-12-02</TD><TD ALIGN=RIGHT>43.863%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Danio<BR>rerio]</TD><TD>Zebrafish</TD> | <TH>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_other/Danio_rerio/Zv9/ 06]</TH><TH>[http://genome-preview.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=CABZ00 Danio<BR>rerio]</TD><TD>Zebrafish</TD> | ||
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<TD ALIGN=RIGHT>2010-12-03</TD> | <TD ALIGN=RIGHT>2010-12-03</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD> | <TD>2011-12-02</TD><TD ALIGN=RIGHT>22.823%</TD> | ||
</TR> | </TR> | ||
</TABLE> | </TABLE> | ||
Revision as of 18:02, 6 December 2011
see also
- Fugu 6-way Fr3 Genome size statistics
- Fugu 6-way Fr3 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on fr3 |
% of fr3 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | fr3 | Takifugu Rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | N/A | N/A |
| 02 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2011-12-01 | 70.912% |
| 03 | oreNil1 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Nile tilapia/oreNil1) | Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1) | 2011-11-30 | 2011-11-30 | 2011-12-02 | 57.240% |
| 04 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2011-12-02 | 55.527% |
| 05 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2011-12-02 | 43.863% |
| 06 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | N/A | 2011-12-02 | 22.823% |
