Medical Sequencing Data: Difference between revisions
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** A group of subjects | ** A group of subjects | ||
** A set of phenotype and genotype tests | ** A set of phenotype and genotype tests | ||
== Existing Genotype/Phenotype Web Databases == | |||
http://www.pharmgkb.org/ - Requires registration for much data. Fan & Jim registered<BR> | |||
http://globin.bx.psu.edu/genphen/ - Belinda, Ross and Webb's work, mostly covers hemoglobins<BR> | |||
Revision as of 16:54, 28 April 2006
Medical Sequencing Data
Some combination of phenotype and genotype ... Details unknown. Worthwhile to design ?
Major Types of information
- Subjects
- Anonymous individuals
- Family history
- Age
- Sex
- Ethnicity
- Pools of people
- Anonymous individuals
- Environmental data
- Location (zip code would be great)
- Medications they are taking
- Exercise, nutrition ...
- Genotype info
- Microarray based
- SNPs
- Haplotype blocks
- Copy number polymorphism
- Sequence based
- Random reads
- PCR products
- larger clones
- single haplotype vs. diploid
- Microarray based
- Phenotype
- Disease presence/absence or severity
- ADR - Adverse Drug Reaction
- Single physiological measure
- Enzyme activity, measure of amount of substance
- Parallel Measures
- Microarray measurements, etc...
Some Other Database Entities
- GenotypeTest - records what regions of genome probed.
- Study
- External URL
- Publications
- Contacts
- A group of subjects
- A set of phenotype and genotype tests
Existing Genotype/Phenotype Web Databases
http://www.pharmgkb.org/ - Requires registration for much data. Fan & Jim registered
http://globin.bx.psu.edu/genphen/ - Belinda, Ross and Webb's work, mostly covers hemoglobins
