Other genome browsers: Difference between revisions
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== Non-UCSC (genome.ucsc.edu) Browsers == | == Non-UCSC (genome.ucsc.edu) Browsers == | ||
The below list of genome browsers is provided as a service to the genomics community. These browsers are not affiliated with the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC Genome Browser] and any questions regarding them should be directed to their hosts. | The UCSC Genome Browser is primarily funded to host vertebrate genomes. The below list of genome browsers is provided as a service to the genomics community. These browsers are not affiliated with the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC Genome Browser] and any questions regarding them should be directed to their hosts. | ||
=== Animal Browsers === | === Animal Browsers === | ||
Revision as of 21:27, 18 June 2012
UCSC Genome mirror sites
The below mirrors are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.
- Medical College of Wisconsin Milwaukee, WI
- Duke University Durham, NC
- Cornell University Ithaca, NY
- Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark
Non-UCSC (genome.ucsc.edu) Browsers
The UCSC Genome Browser is primarily funded to host vertebrate genomes. The below list of genome browsers is provided as a service to the genomics community. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.
Animal Browsers
- 1000 Genomes A Deep Catalog of Human Genetic Variation
- NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
- Jim Watson genome browser at CSHL
- Craig Venter genome data release
- dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD
- Vista Lawrence Berkeley Lab, CA
- GARFIELD cat genome browser, Federick, MD
- C. intestinalis: UCSC-based, Gbrowse
- The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...
- Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
- Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis.
- Eyebrowse specializing in eye tissue sequences
- Silkworm Bombyx mori, China
- UNLV Las Vegas Genome Browser hosting: D. melanogaster and some plants
- NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program
Plant Browsers
- EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
- Arabidopsis genome browser at UCLA
- Arabidopsis genome browser at Dartmouth.
- Arabidopsis arabidopsis.info Ensembl-based genome browser
- UNLV Las Vegas Genome Browser hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster
- gramene.org many rice genomes and other grasses
- RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)
- Zea mays Maize Genome Sequencing Project
- Cannabis sativa Cannabis browser at U Toronto
Fungi/Yeast Browsers
- Saccharomyces cerevisiae database and genome browser from SGD/Stanford University
- S. pombe (fission yeast) at NCI, NIH
Other
- Archaea browser from the Lowe Lab at UCSC
- Paramecium tetraurelia Genoscope, France
- JPGV Jena Prokaryotic Genome Browser
