User talk:Fubar: Difference between revisions
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Wiggle tracks need a bar graph option - points or joined points can be very misleading! | Wiggle tracks need a bar graph option - points or joined points can be very misleading! | ||
Ah, bedGraph mentioned in ..kent/src/hg/makeDb/trackDb/README does the trick. It's an ordinary 9 column bed file with extra options including bars which are much more appropriate for (eg) -log10(p) values from an analysis eg. I am making custom tracks using (eg) | |||
<code><pre> | |||
track bdrabpctmincov | |||
priority 2.100 | |||
shortLabel bdrabpctmincov | |||
longLabel CAMP 2007 pbat additive model -log10(p) bdrabpctmincov | |||
visibility hide | |||
type bedGraph | |||
autoScale off | |||
viewLimits 0:7 | |||
minLimit 0 | |||
maxLimit 7 | |||
maxHeightPixels 60:40:40 | |||
color 56,88,9 | |||
group phenDis | |||
</pre></code> | |||
Revision as of 12:28, 14 June 2007
Things worth remembering that might be useful for other UCSC mirror builders
Notes
Galaxy notes: Fubar:GalaxyNotes
Some random notes on installing a mirror under CentOS: CentOS_notes
Some notes on adding a custom track: Custom_track
Code of potential use for mirror sites
The ucsc wiki can't set a cookie for your local mirror, so here's an example of LDAP authentication for local mirrors: Fubar:LDAP_auth
Gripes
Wiggle tracks need a bar graph option - points or joined points can be very misleading! Ah, bedGraph mentioned in ..kent/src/hg/makeDb/trackDb/README does the trick. It's an ordinary 9 column bed file with extra options including bars which are much more appropriate for (eg) -log10(p) values from an analysis eg. I am making custom tracks using (eg)
track bdrabpctmincov
priority 2.100
shortLabel bdrabpctmincov
longLabel CAMP 2007 pbat additive model -log10(p) bdrabpctmincov
visibility hide
type bedGraph
autoScale off
viewLimits 0:7
minLimit 0
maxLimit 7
maxHeightPixels 60:40:40
color 56,88,9
group phenDis
