Other genome browsers
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Revision as of 21:09, 18 June 2012 by Greg (talk | contribs) (→UCSC Genome mirror sites: added line noting that mirrors are not maintained by UCSC.)
UCSC Genome mirror sites
The below mirrors of the UCSC Genome Browsers are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.
- Medical College of Wisconsin Milwaukee, WI
- Duke University Durham, NC
- Cornell University Ithaca, NY
- Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark
- Australia Queensland Facility for Advanced Bioinformatics (QFAB)
Non-UCSC (genome.ucsc.edu) Browsers
The below list of genome browsers is provided as a service to the genomics community. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.
Animal Browsers
- 1000 Genomes A Deep Catalog of Human Genetic Variation
- NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.
- Jim Watson genome browser at CSHL
- Craig Venter genome data release
- dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD
- Vista Lawrence Berkeley Lab, CA
- GARFIELD cat genome browser, Federick, MD
- C. intestinalis: UCSC-based, Gbrowse
- The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...
- Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse
- Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis.
- Eyebrowse specializing in eye tissue sequences
- Silkworm Bombyx mori, China
- UNLV Las Vegas Genome Browser hosting: D. melanogaster and some plants
- NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program
Plant Browsers
- EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella
- Arabidopsis genome browser at UCLA
- Arabidopsis genome browser at Dartmouth.
- Arabidopsis arabidopsis.info Ensembl-based genome browser
- UNLV Las Vegas Genome Browser hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster
- gramene.org many rice genomes and other grasses
- RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)
- Zea mays Maize Genome Sequencing Project
- Cannabis sativa Cannabis browser at U Toronto
Fungi/Yeast Browsers
- Saccharomyces cerevisiae database and genome browser from SGD/Stanford University
- S. pombe (fission yeast) at NCI, NIH
Other
- Archaea browser from the Lowe Lab at UCSC
- Paramecium tetraurelia Genoscope, France
- JPGV Jena Prokaryotic Genome Browser
