Hg38 100-way conservation alignment
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see also
- Human 100-way Hg38 100-way Genome size statistics
- Human 100-way Hg38 100-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg38 |
% of hg38 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | 2015-01-14 | N/A |
| 02 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2014-05-27 | 93.112% |
| 03 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | 2013-06-21 | 2014-12-15 | 88.005% |
| 04 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | 2013-06-21 | 2014-09-02 | 89.187% |
| 05 | nomLeu3 | Nomascus leucogenys | Gibbon | Oct. 2012 (GGSC Nleu3.0/nomLeu3) | Gibbon Genome Sequencing Consortium | 2013-03-04 | 2013-03-01 | 2014-12-12 | 86.379% |
| 06 | macFas5 | Macaca fascicularis | Crab-eating macaque | Jun 2013 (Macaca_fascicularis_5.0/macFas5) | Washington University (WashU) GCA_000364345.1 | 2013-06-30 | 2013-06-30 | 2014-12-14 | 85.675% |
| 07 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2014-01-28 | 79.729% |
| 08 | papAnu2 | Papio anubis | Baboon | Mar. 2012 (Baylor Panu_2.0/papAnu2) | Baylor College of Medicine | 2012-07-22 | 2012-08-07 | 2014-12-13 | 84.179% |
| 09 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (Broad/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2014-12-13 | 70.565% |
| 10 | chlSab2 | Chlorocebus sabaeus | Green monkey | 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) | Vervet Genomics Consortium GCA_000409795.2 | 2014-04-10 | 2014-04-10 | 2014-07-11 | 84.393% |
| 11 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | 2013-06-21 | 2014-12-13 | 71.709% |
| 12 | oryAfe1 | Orycteropus afer afer | Aardvark | May 2012 (OryAfe1.0/oryAfe1) | Broad Institute GCA_000298275.1 | 2013-07-07 | 2013-07-07 | 2015-02-11 | 36.526% |
| 13 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2014-12-13 | 49.485% |
| 14 | cerSim1 | Ceratotherium simum | White rhinoceros | May 2012 (CerSimSim1.0/cerSim1) | Broad Institute | 2012-08-28 | 2012-08-28 | 2015-02-11 | 53.075% |
| 15 | chrAsi1 | Chrysochloris asiatica | Cape golden mole | Aug 2012 (ChrAsi1.0/chrAsi1) | Broad Institute GCA_000296735.1 | 2013-07-07 | 2013-07-07 | 2015-02-11 | 29.208% |
| 16 | eptFus1 | Eptesicus fuscus | Big brown bat | Jul 2012 (EptFus1.0/eptFus1) | Broad Institute GCA_000308155.1 | 2013-08-28 | 2013-08-28 | 2015-02-11 | 36.386% |
| 17 | tupChi1 | Tupaia chinensis | Chinese tree shrew | Jan 2013 (TupChi_1.0/tupChi1) | BGI GCA_000334495.1 | 2013-07-05 | 2013-07-05 | 2015-02-10 | 37.022% |
| 18 | equCab2 | Equus caballus | Horse | Sep. 2007 (Broad/equCab2) | Broad Institute EquCab2 | 2009-08-14 | 2013-06-21 | 2015-02-11 | 52.083% |
| 19 | camFer1 | Camelus ferus | Bactrian camel | Dec 2011 (CB1/camFer1) | The Bactrian Camels Genome Sequencing and Analysis Consortium GCA_000311805.1 | 2013-07-12 | 2013-07-12 | 2015-02-11 | 46.206% |
| 20 | vicPac2 | Vicugna pacos | Alpaca | Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) | Broad Institute | 2013-06-10 | 2013-06-10 | 2015-02-11 | 45.887% |
| 21 | turTru2 | Tursiops truncatus | Dolphin | Oct. 2011 (Baylor Ttru_1.4/turTru2) | Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) | 2012-04-14 | 2012-04-14 | 2015-02-11 | 46.072% |
| 22 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2014-01-27 | 49.978% |
| 23 | orcOrc1 | Orcinus orca | Killer whale | Jan 2013 (Oorc_1.1/orcOrc1) | Marine mammals GCA_000331955.1 | 2013-08-20 | 2013-08-20 | 2015-02-11 | 47.281% |
| 24 | speTri2 | Spermophilus tridecemlineatus | Squirrel | Nov. 2011 (Broad/speTri2) | Broad Institute (GCA_000236235.1) | 2012-03-14 | 2012-03-15 | 2015-02-10 | 44.729% |
| 25 | pteAle1 | Pteropus alecto | Black flying-fox | Aug 2012 (ASM32557v1/pteAle1) | BGI GCA_000325575.1 | 2013-08-28 | 2013-08-28 | 2015-02-12 | 45.612% |
| 26 | susScr3 | Sus scrofa | Pig | Aug. 2011 (SGSC Sscrofa10.2/susScr3) | SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) | 2012-04-12 | 2012-04-13 | 2015-02-12 | 41.326% |
| 27 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 (Broad/loxAfr3) | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-09-02 | 2013-06-21 | 2015-02-12 | 41.904% |
| 28 | hetGla2 | Heterocephalus glaber | Naked mole-rat | Jan. 2012 (Broad HetGla_female_1.0/hetGla2) | Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) | 2012-04-14 | 2012-04-14 | 2015-02-11 | 42.315% |
| 29 | pteVam1 | Pteropus vampyrus | Megabat | Jul. 2008 (Broad/pteVam1) | Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) | 2009-09-02 | 2012-05-02 | 2015-02-11 | 41.012% |
| 30 | felCat8 | Felis catus | Cat | Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) | International Cat Genome Sequencing Consortium | 2014-11-22 | 2014-11-22 | 2015-02-12 | 47.700% |
| 31 | ailMel1 | Ailuropoda melanoleuca | Panda | Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) | BGI-Shenzhen AilMel 1.0 Dec. 2009 | 2010-02-03 | 2013-06-21 | 2015-02-12 | 48.226% |
| 32 | musFur1 | Mustela putorius furo | Ferret | Apr. 2011 (MusPutFur1.0/musFur1) | Ferret Genome Sequencing Consortium | 2013-03-05 | 2013-03-05 | 2015-02-12 | 45.782% |
| 33 | cavPor3 | Cavia porcellus | Guinea pig | Feb. 2008 (Broad/cavPor3) | Broad Institute cavPor3 | 2009-08-15 | 2009-08-15 | 2015-02-11 | 37.901% |
| 34 | dasNov3 | Dasypus novemcinctus | Armadillo | Dec. 2011 (Baylor/dasNov3) | Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) | 2012-04-12 | 2012-04-13 | 2015-02-11 | 42.233% |
| 35 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 (Broad/oryCun2) | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-09-02 | 2013-06-21 | 2015-02-12 | 38.631% |
| 36 | panHod1 | Pantholops hodgsonii | Tibetan antelope | May 2013 (PHO1.0/panHod1) | BGI GCA_000400835.1 | 2013-07-15 | 2013-07-15 | 2015-02-12 | 41.357% |
| 37 | lepWed1 | Leptonychotes weddellii | Weddell seal | Mar 2013 (LepWed1.0/lepWed1) | Broad Institute GCA_000349705.1 | 2013-07-11 | 2013-07-11 | 2015-02-12 | 47.437% |
| 38 | odoRosDiv1 | Odobenus rosmarus divergens | Pacific walrus | Jan 2013 (Oros_1.0/odoRosDiv1) | Marine mammals GCA_000321225.1 | 2013-07-12 | 2013-07-12 | 2015-02-12 | 47.985% |
| 39 | myoDav1 | Myotis davidii | David's myotis (bat) | Aug 2012 (ASM32734v1/myoDav1) | BGI GCA_000327345.1 | 2013-08-28 | 2013-08-28 | 2015-02-12 | 34.892% |
| 40 | bosTau8 | Bos taurus | Cow | Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) | University of Maryland Bos_taurus_UMD_3.1.1 | 2014-09-11 | 2014-09-12 | 2014-10-16 | 45.975% |
| 41 | capHir1 | Capra hircus | Domestic goat | May 2012 (CHIR_1.0/capHir1) | International Goat Genome Consortium GCA_000317765.1 | 2013-07-15 | 2013-07-15 | 2015-02-13 | 41.318% |
| 42 | oviAri3 | Ovis aries | Sheep | Aug. 2012 (ISGC Oar_v3.1/oviAri3) | International Sheep Genome Consortium | 2013-06-10 | 2013-06-09 | 2015-01-21 | 41.193% |
| 43 | myoLuc2 | Myotis lucifugus | Microbat | Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) | Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) | 2010-11-03 | 2013-06-21 | 2015-02-12 | 35.148% |
| 44 | eleEdw1 | Elephantulus edwardii | Cape elephant shrew | Aug 2012 (EleEdw1.0/eleEdw1) | Broad Institute GCA_000299155.1 | 2013-07-07 | 2013-07-07 | 2015-02-12 | 22.161% |
| 45 | triMan1 | Trichechus manatus latirostris | Manatee | Oct. 2011 (Broad v1.0/triMan1) | Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) | 2012-03-28 | 2012-03-29 | 2015-02-12 | 41.443% |
| 46 | jacJac1 | Jaculus jaculus | Lesser Egyptian jerboa | May 2012 (JacJac1.0/jacJac1) | Broad Institute GCA_000280705.1 | 2013-07-15 | 2013-07-15 | 2015-02-12 | 27.899% |
| 47 | chiLan1 | Chinchilla lanigera | Chinchilla | May 2012 (ChiLan1.0/chiLan1) | Broad Institute | 2012-07-28 | 2012-07-27 | 2015-02-12 | 40.808% |
| 48 | conCri1 | Condylura cristata | Star-nosed mole | Mar 2012 (ConCri1.0/conCri1) | Broad Institute GCA_000260355.1 | 2013-07-09 | 2013-07-09 | 2015-02-12 | 33.037% |
| 49 | octDeg1 | Octodon degus | Brush-tailed rat | Apr 2012 (OctDeg1.0/octDeg1) | Broad Institute GCA_000260255.1 | 2013-07-07 | 2013-07-07 | 2015-02-12 | 35.827% |
| 50 | ochPri3 | Ochotona princeps | Pika | May 2012 (OchPri3.0/ochPri3) | Broad Institute | 2013-06-20 | 2013-06-18 | 2015-02-12 | 30.261% |
| 51 | eriEur2 | Erinaceus europaeus | Hedgehog | May 2012 (EriEur2.0/eriEur2) | Broad Institute EriEur2.0 | 2013-06-12 | 2013-06-07 | 2015-02-12 | 21.643% |
| 52 | echTel2 | Echinops telfairi | Tenrec | Nov. 2012 (Broad/echTel2) | Broad/EchTel2.0 | 2013-05-30 | 2013-05-30 | 2015-02-12 | 27.550% |
| 53 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2014-01-25 | 31.629% |
| 54 | rn6 | Rattus norvegicus | Rat | Jul. 2014 (RGSC 6.0/rn6) | RGSC Rnor_6.0 | 2014-07-08 | 2014-07-09 | 2015-02-14 | 31.077% |
| 55 | criGri1 | Cricetulus griseus | Chinese hamster | Jul. 2013 (C_griseus_v1.0/criGri1) | Beijing Genomics Institution-Shenzhen | 2014-04-04 | 2013-08-28 | 2015-02-13 | 24.331% |
| 56 | mesAur1 | Mesocricetus auratus | Golden hamster | Mar 2013 (MesAur1.0/mesAur1) | Broad Institute GCA_000349665.1 | 2013-08-28 | 2013-08-28 | 2015-02-13 | 21.475% |
| 57 | micOch1 | Microtus ochrogaster | Prairie vole | Oct 2012 (MicOch1.0/micOch1) | Broad Institute GCA_000317375.1 | 2013-08-26 | 2013-08-26 | 2015-02-14 | 31.489% |
| 58 | sorAra2 | Sorex araneus | Shrew | Aug. 2008 (Broad/sorAra2) | Broad Institute SorAra2.0 | 2013-05-29 | 2013-05-29 | 2015-02-13 | 22.099% |
| 59 | macEug2 | Macropus eugenii | Wallaby | Sep. 2009 (TWGS Meug_1.1/macEug2) | TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) | 2010-11-05 | 2011-12-02 | 2015-02-13 | 5.295% |
| 60 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2014-05-29 | 14.370% |
| 61 | sarHar1 | Sarcophilus harrisii | Tasmanian devil | Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) | Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) | 2012-02-02 | 2012-02-08 | 2015-02-14 | 12.754% |
| 62 | apaSpi1 | Apalone spinifera | Spiny softshell turtle | May 2013 (ASM38561v1/apaSpi1) | WUGSC GCA_000385615.1 | 2013-08-26 | 2013-08-26 | 2015-02-14 | 4.611% |
| 63 | cheMyd1 | Chelonia mydas | Green seaturtle | Mar 2013 (CheMyd_1.0/cheMyd1) | BGI GCA_000344595.1 | 2013-08-26 | 2013-08-26 | 2015-02-06 | 6.296% |
| 64 | chrPic2 | Chrysemys picta bellii | Painted turtle | Mar. 2014 (v3.0.3/chrPic2) | International Painted Turtle Genome Sequencing Consortium | 2014-04-29 | 2014-04-10 | 2015-02-06 | 6.708% |
| 65 | pelSin1 | Pelodiscus sinensis | Chinese softshell turtle | Oct 2011 (PelSin_1.0/pelSin1) | Soft-shell Turtle Genome Consortium GCA_000230535.1 | 2013-07-01 | 2013-07-01 | 2015-02-14 | 5.716% |
| 66 | ornAna1 | Ornithorhynchus anatinus | Platypus | Mar. 2007 (WUGSC 5.0.1/ornAna1) | WUSTL version 5.0.1 | 2009-08-15 | 2013-06-22 | 2015-02-13 | 7.769% |
| 67 | allMis1 | Alligator mississippiensis | American alligator | Aug. 2012 (allMis0.2/allMis1) | International Crocodilian Genomes Working Group | 2013-06-07 | 2012-08-28 | 2015-02-14 | 7.561% |
| 68 | colLiv1 | Columba livia | Rock pigeon | Feb 2013 (Cliv_1.0/colLiv1) | BGI GCA_000337935.1 | 2013-06-27 | 2013-06-27 | 2015-02-13 | 4.712% |
| 69 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2015-02-13 | 4.696% |
| 70 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2015-02-06 | 3.593% |
| 71 | anaPla1 | Anas platyrhynchos | Mallard duck | Apr 2013 (BGI_duck_1.0/anaPla1) | State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1 | 2013-06-27 | 2013-06-27 | 2015-02-13 | 4.268% |
| 72 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | 2013-06-21 | 2015-02-13 | 4.328% |
| 73 | falChe1 | Falco cherrug | Saker falcon | Feb 2013 (F_cherrug_v1.0/falChe1) | BGI GCA_000337975.1 | 2013-06-27 | 2013-06-27 | 2015-02-13 | 4.828% |
| 74 | falPer1 | Falco peregrinus | Peregrine falcon | Feb 2013 (F_peregrinus_v1.0/falPer1) | BGI GCA_000337955.1 | 2013-06-28 | 2013-06-28 | 2015-02-13 | 4.926% |
| 75 | amaVit1 | Amazona vittata | Parrot | Jan. 2013 (AV1/amaVit1) | Puerto Rican Parrot Genome Project AV1 | 2013-03-27 | 2013-03-27 | 2015-02-13 | 4.186% |
| 76 | araMac1 | Ara macao | Scarlet Macaw | Jun 2013 (SMACv1.1/araMac1) | Texas A&M University GCA_000400695.1 | 2013-06-28 | 2013-06-28 | N/A | N/A |
| 77 | pseHum1 | Pseudopodoces humilis | Tibetan ground jay | Jan 2013 (PseHum1.0/pseHum1) | Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 | 2013-06-27 | 2013-06-27 | N/A | N/A |
| 78 | melUnd1 | Melopsittacus undulatus | Budgerigar | Sep. 2011 (WUSTL v6.3/melUnd1) | WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) | 2012-03-27 | 2012-03-28 | N/A | N/A |
| 79 | ficAlb2 | Ficedula albicollis | Collared flycatcher | Jun 2013 (FicAlb1.5/ficAlb2) | Uppsala University GCA_000247815.2 | 2013-06-29 | 2013-06-29 | N/A | N/A |
| 80 | zonAlb1 | Zonotrichia albicollis | White-throated sparrow | Apr 2013 (ASM38545v1/zonAlb1) | White-throated sparrow consortium GCA_000385455.1 | 2013-06-26 | 2013-06-26 | N/A | N/A |
| 81 | geoFor1 | Geospiza fortis | Medium ground finch | Apr. 2012 (GeoFor_1.0/geoFor1) | Beijing Genomics Institute | 2012-07-26 | 2012-07-26 | N/A | N/A |
| 82 | taeGut2 | Taeniopygia guttata | Zebra finch | Feb. 2013 (WashU taeGut324/taeGut2) | Washington University School of Medicine | 2013-06-05 | 2013-06-05 | N/A | N/A |
| 83 | lepOcu1 | Lepisosteus oculatus | Spotted gar | Dec 2011 (LepOcu1/lepOcu1) | Broad Institute of MIT and Harvard GCA_000242695.1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 84 | xenTro7 | Xenopus tropicalis | X. tropicalis | Sep. 2012 (JGI 7.0/xenTro7) | US DOE Joint Genome Institute (JGI-PGF) | 2013-06-21 | 2013-06-14 | N/A | N/A |
| 85 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (Broad/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | N/A | N/A |
| 86 | gadMor1 | Gadus morhua | Atlantic cod | May 2010 (Genofisk GadMor_May2010/gadMor1) | Genofisk GadMor_May2010 (GCA_000231765.1) | 2011-12-29 | 2012-01-04 | N/A | N/A |
| 87 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | N/A | N/A |
| 88 | oreNil2 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Broad oreNil1.1/oreNil2) | Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) | 2012-04-10 | 2012-04-11 | N/A | N/A |
| 89 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | N/A | N/A |
| 90 | neoBri1 | Neolamprologus brichardi | Princess of Burundi | May 2011 (NeoBri1.0/neoBri1) | Broad Institute of MIT and Harvard GCA_000239395.1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 91 | takFla1 | Takifugu flavidus | Yellowbelly pufferfish | May 2013 (version 1 of Takifugu flavidus genome/takFla1) | IOCAS GCA_000400755.1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 92 | hapBur1 | Haplochromis burtoni | Burton's mouthbreeder | Oct 2011 (AstBur1.0/hapBur1) | Broad Institute of MIT and Harvard GCA_000239415.1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 93 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | N/A | N/A |
| 94 | astMex1 | Astyanax mexicanus | Mexican tetra (cavefish) | Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) | Aquatic Genome Models GCA_000372685.1 | 2013-08-28 | 2013-08-28 | N/A | N/A |
| 95 | petMar2 | Petromyzon marinus | Lamprey | Sep. 2010 (WUGSC 7.0/petMar2) | GSC Washington University School of Medicine | 2012-10-12 | 2012-10-12 | 2015-02-06 | 1.265% |
| 96 | danRer10 | Danio rerio | Zebrafish | Sep. 2014 (GRCz10/danRer10) | Genome Reference Consortium Zebrafish Build 10 | 2015-01-26 | 2015-01-22 | 2015-02-08 | 3.357% |
| 97 | mayZeb1 | Maylandia zebra | Zebra Mbuna | Mar 2012 (MetZeb1.1/mayZeb1) | Broad Institute GCA_000238955.2 | 2013-08-28 | 2013-08-28 | 2015-02-07 | 1.805% |
| 98 | punNye1 | Pundamilia nyererei | Pundamilia nyererei | Oct 2011 (PunNye1.0/punNye1) | Broad Institute of MIT and Harvard GCA_000239375.1 | 2013-08-28 | 2013-08-28 | 2015-02-06 | 1.787% |
| 99 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2015-02-06 | 2.002% |
| 100 | xipMac1 | Xiphophorus maculatus | Southern platyfish | Jan 2012 (Xiphophorus_maculatus-4.4.2/xipMac1) | Washington University School of Medicine GCA_000241075.1 | 2013-07-01 | 2013-07-01 | 2015-02-06 | 1.898% |
