Single Cell Sequencing Methods

• Monocle: putative trajectories of cells
• scLVM: remove cell-cycle effect
• wanderlust: putative trajectories of cells
• Seurat: most variant genes, T-SNE plotting, clustering, specific genes per cluster, spatial assignment given in-situ data
• backSPIN: ?
• SCDE: ?
• WGCNA
• SCDE
• Fluidigm Singular Analysis Toolset: Windows only
• Reviews and overviews
  • [biorxiv.org/content/biorxiv/early/2015/05/21/019588.full.pdf summary?]
  • single cell tutorial slide deck
  • slides from single cell workship 2015