Opsin evolution: Melanopsin gene loss
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Revision as of 00:13, 14 April 2008 by Tomemerald (talk | contribs) (→Reference set of MEL1 melanopsins still found in mammals)
Introduction to Melanopsin Evolution
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Melanopsin MEL1 retention with exon loss in mammals
Melanopsin is an ancient rhabodomeric Gq opsin that persists all examined extant deuterostomes (which otherwise use ciliary opsins and the peropsin-group opsins). The melanopsins in earlier diverging clades are remarkable for their greatly extended C-terminal extension whose location is presumably cytoplasmic and whose function is quite unknown. This extenstion has undergone rapid change in post-frog species such as birds and lizards resulting in novel exons, diminished distal homology -- and in mammals, complete loss of terminal exons and any functionality that they provided. Less drastic length alterations occur at the amino terminus as well and indels are far more common than in other opsin families. This raises questions about what lies behind these dramatic shifts.
Melanopsin MEL2 gene loss in mammals
A paralogous second melanopsin in nonmammalian vertebrates was found quite recently by Bellingham et al. This evidently arose prior to divergence of telost fish by a segmental duplication because some evidence of flanking synteny survives. It cannot have arisen by the whole genome duplication in fish because that would not have descended to frog, lizards, and birds. No sign of this second gene can be found in platypus, marsupials, or placental mammals -- yet another longstanding functional opsin gene lost in this clade.
Reference set of MEL1 melanopsins still found in mammals
Transmembrane sections 1-7 in MEL1_homSAP LGTVILLVGLTGMLGNLTVIY FIINLAVSDFLMSFTQAPVFF FYAFCGALFGISSMITLTAIA FVLLGVWLYALAWSLPPFFGW LCCFVFFLPLLIIIYCYIFIF IMLLVILLFVLSWAPYSAVAL SVPAVIAKASAIHNPIIYAIT >MEL1_homSap Homo sapiens (human) Gq indel -GRID1 -WAPAL +LDB3 +BMPR1A 16961436 NM_033282 melanopsin OPN4 full 0 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPT 0 0 APGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGET 1 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGR 2 1 ALQTFGACKGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAG 2 1 YAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQESLGSESEV 0 0 GWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGK 0 0 TKGLIPSQDPRM* 0 >MEL1_panTro chimp full 0 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPT 0 0 APGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGET 1 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGR 2 1 ALQTFGACKGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAG 2 1 YAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLISHTSNLSWISIRRRQESLGSESEV 0 0 GWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGK 0 0 TKGLIPSQDPRM* 0 >MEL1_ponpyg Pongo pygmaeus full 0 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGQLPSISPT 0 0 APGTWAAALVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLMVIYTFCR 2 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGET 1 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATIGVASKRRAAFVLLGVWLYALAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGR 2 1 VAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTMISHTSNLSWISGRRRQESLGSESEV 0 1 ALQTFGACKGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAG 2 1 YAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 0 GWTHMEAAAVWGAAQQANGRFLYDQGLEDLEAKAPPRPQGEEAETPGK 0 0 TKGLIPSQDPRM* 0 >MEL1_rheMac rhesus full 0 MNPPSGPRVPPSPTQEPSCMATPAPPSRWDSSQSSISSLGQLPSVSPT 0 0 AAGTWAAAWVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRGLRTPANMFIINLAISDFLMSFTQAPVFFASSLYKHWLFGET 1 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATIGVASKRRAAFVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETG 2 1 ALQTFGACKGSGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAG 2 1 YAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCLGVLLGVSRRHSHPYPSYRSTHRSTLISHTSNLSWISGRRRQESLGSESEV 0 0 GWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGQEAETPGK 0 0 TKGLLPCKDSRM* 0 >MEL1_calJac marmoset frag 0 MNLPTGSRVLPSPTQEPSCMTTPAPPSRWDSSQSSISSLSQLPSISPT 0 0 AAGTWAAAWIPFPTVDVPDHAHYTLGTVILLVGVTGMLGNLTVIYTFCR 2 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFASSLYKRWLFGET 1 2 IALDRYLVITRPLATIGLASTRRAAFVLLGVWLYALAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGR 2 1 ALQTFGACKGSGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAG 2 1 YAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCLGVLLGVSRRHSHPYPSYRSTHRSTLISHTSNLSWISGRRRQESLGSESEV 0 0 GWTHMEAAAAWGAAQQANGRSLYGHGLEDLEAKAPPRPQRQEAETPGK 0 0 TKGLIPSQDPRM* 0 >MEL1_tarSyr Tarsius syrichta poor coverage, ok frag 0 MNPASGPRVSPSSTQEPSCVASPALPSRWDSSQNSLSSLSQLPPISPT 0 0 AAGAWAAALVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTV 2 1 1 2 1 2 sAYVPEGLLTSCSWDYMSFTPSVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGR 2 1 ALQNFGACKDGSESLWQRQRLQSEWKMAKIMFLVILLFVLSWAPYSAVALVAFAG 2 1 2 1 VAIAQHLPCLGVLLGVSRQHSRPYPSYRSTHRSTLSSQTSDLSWISGRRRQESLGSETEV 0 0 GWTDMEAADMWGDAQQVSVRFPYGQGLEDIETKASSRLQGQEAKTPGK 0 0* 0 >MEL1_otoGar bushbaby full 0 mhLPSAPRVPPSPAQVPSCVATPAPHSRWDSSQTSISSLGQLRPVSPT 0 0 ASGAWAAGWIPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRLRTPANMFVINLAVSDFLMSVTQAPVFFASSLYKQWLFGET 1 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLTTVGVASKRRAALVLLGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYTSFTPSVRTYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGR 2 1 ALQTFGACKGSSESPRQRQRLQNEWKMAKITLLVILFFVLSWAPYTTVALVAFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCLGLLLGVSRQHSRPYPSYRFTHHSTLSSQASDLSWISGRRRQESLGSESEV 0 0 GWTDMEAAATWGAALQVSGQCPYSQGLEDMEAKGPLRPQGPETKTSGK 0 0 TKGLLPSLDPRM* 0 >MEL1_micMar Microcebus murinus frag 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLASVGTASKRRAGLVLLGVWLYALAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYMTFTPSVRAYTMLLCCFVFFLPLLVIIYCYIFIFRAIRETGR 2 1 ALQTFGASKGTSESPRQQQRLQNEWKMAKIMLLVILLFLLSWAPYTAVALVAFAG 2 1 YAHILTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCVGVLLGVSRQHSRPYPSYRSTHRSTLSSQASDLSWISGRRRQESLGSE 0 >MEL1_tupBel Tupaia belangeri poor coverage, ok frag 0 AAGAQAAVRAPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 0 1 ACEGGGASPGQRQRQRLQSEWKMAKIALLVILLFVLSWAPYSTVALVAFAG 2 1 YAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 >MEL1_musMus Mus musculus (house mouse) gene models readthru error full 0 MDSPSGPRVLSSLTQDPSFTTSPALQGIWNGTQNVSVRAQLLSVSPT 0 0 TSAHQAAAWVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 NRGLRTPANMFIINLAVSDFLMSVTQAPVFFASSLYKKWLFGET 1 2 GCEFYAFCGAVFGITSMITLTAIAMDRYLVITRPLATIGRGSKRRTALVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMTFTPQVRAYTMLLFCFVFFLPLLIIIFCYIFIFRAIRETGR 2 1 ACEGCGESPLRQRRQWQRLQSEWKMAKVALIVILLFVLSWAPYSTVALVAFAG 2 1 YSHILTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 1 VAIAQHLPCLGVLLGVSGQRSHPSLSYRSTHRSTLSSQSSDLSWISGRKRQESLGSESEV 0 0 GWTDTETTAAWGAAQQASGQSFCSQNLEDGELKASSSPQVQRSKTPK 0 0 TKGHLPSLDLGM* 0 >MEL1_ratNor Rattus norvegicus (rat) 18001324,17652756,16687290,16186625,15509757,15073514,12904470,14500998,11834834 0 MNSPSESRVPSSLTQDPSFTASPALLQGIWNSTQNISVRVQLLSVSPT 0 0 TPGLQAAAWVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 NRGLRTPANMLIINLAVSDFLMSFTQAPVFFASSLYKKWLFGET 1 2 GCKFYAFCGAVFGIVSMITLTAIAMDRYLVITRPLATIGMRSKRRTALVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYVTFTPLVRAYTMLLFCFVFFLPLLIIIFCYIFIFRAIRETGR 2 1 ACEGCGESPLRRRQWQRLQSEWKMAKVALIVILLFVLSWAPYSTVALVGFAG 2 1 YSHILTPYMSSVPAVIAKASAIHNPIIYAITHPKYR 2 1 AAIAQHLPCLGVLLGVSGQRSHPSLSYRSTHRSTLSSQSSDLSWISGQKRQESLGSESEV 0 0 GWTDTETTAAWGAAQQASGQSFCSHDLEDGEVKAPSSPQEQKSKTPK 0 0 TKRHLPSLDRRM* 0 >MEL1_phoSun Phodopus sungorus (hamster) AY726733 mrna full 0 MDSPPGPTAPPGLTQGPSFMASTTLHSHWNSTQKVSTRAQLLAVSPT 0 0 ASGPEAAAWVPFPTVDVPDHAHYILGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRSLRTPANMLIINLAVSDFLMSFTQAPVFFASSLYKKWLFGET 1 2 GCEFYAFCGAVLGITSMITLTAIALDRYLVITRPLATIGMGSKRRTALVLLGIWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYVTFTPQVRAYTMLLFCFVFFLPLLVIIFCYISIFRAIRETGR 2 1 ACEGWSESPQRRRQWHRLQSEWKMAKVALIVILLFVLSWAPYSTVALVAFAG 2 1 YSHILTPYMSSVPAVIAKASAIHNPIVYAITHPKYR 2 1 AAIAQHLPCLGVLLGVSSQRNRPSLSYRSTHRSTLSSQSSDLSWISAPKRQESLGSESEV 0 0 GWTDTEATAVWGAAQPASGQSSCGQNLEDGMVKAPSSPQAKGQLPS 0 0 LDLGMQDAP* 0 >MEL1_nanSpa Nannospalax ehrenbergi (mole-rat) AM748539 full 0 MNSPSGPRVPPGLAQKPSFMVTPVLPNQWISFQKNVSVGIQLPPASAT 0 0 ATGAQAASWVPFPTVDVPVHAHYTLGTVILLVGLTGMLGNLIVIYTFCR 2 1 SRGLRTRANMFTVNLAVSDFLMSFTQAPVFFASSLYKRWLFGEA 1 2 GCEFYAFCGAVSGITSMTTLTAIALDRYLVITRPLATIGVASKRRTALVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMTFTPSVRAYTMLLFCFVFFLPLLIIIFCYIFIFKAIRETGR 2 1 ACEGCGESPQRRRQWQRLQNEWKMAKVALLVIFLFVLSWAPYSTVALVAFAG 2 1 YSHILTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 LAISQHLPCLGVLIGVSSQRSHPSLSYRSTHRSTLSSQASDLSWISGRKRQESLGSESEV 0 0 GWTDTEVTAAWGVAQEASGWSPYRHSLEDGEVKASPSPQGQEAKTSRK 0 0 TKGQLPSLNLRM* 0 >MEL1_cavPor Cavia porcellus frag 0 GLSPQVAGAQAAAWIPFPTVDVPAHAHYTLGAVILLVGLTGMLGNLTVIYTFCR 2 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKRWLFGEA 1 2 GCEFYAFCGALFGITSMITLTAITLDRYLVITRPLATIGVASKRQAALVLLGVWLYALAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYVTFTPSVRAYTMLLFCFVFFLPLLVIIYCYIFIFRAIRETGR 2 1 LRSEWKMAKIALLVILLFVLSWAPYSAVALVAFAG 2 1 AAIVQHLPCLGVLLGVSGQHGRPSLRYRSTHRSTLSSQASDLSWISGRRRQESLGSESEV 0 1 YAHMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 0 GWTDTEA WGAAQQGSGQSPYDLVLEDWEARAPPKARVWGAGTPGK 0 >MEL1_oryCun rabbit frag 0 MNSPWGSRVPPGPAQEPRSTAPPSRWDGSESSISSPGQLTPGSPT 0 0 APGAQEAAWVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRSLRTPANMFIINLAVSDFLMSFTQAPVFFASSLYKRWLFGET 1 2 GCEFYAFCGALFGISSMITLTAIALDRYLVITRPLAAVGMVSKKRAGLVLLGVWLYALAWSLPPLFGW 1 2 SAYVPEGLLTSCSWDYVTFTPSVRSYTMLLFCFVFFLPLLVIVYCYIFIFRAIRETGR 2 1 ACQGSHESPRQWRRLQSEWKMAKVALLVILLFLLSWAPYSTVALVAFAG 2 1 YAHSLSPYMNSVPAVIAKASAIHNPIIYAITHPKY 2 0 GWTDTEAAAAWGAALQLSGRYLCGQGLEDGEIKATPRRQGPEAETPRK 0 >MEL1_canfam dog 0 MNPPSGPGAQEPGCVATAASPGRWHGSPRSTVGLDQALPTGPT 0 0 AAGARAAAWAPFPTVDVPDHAHYILGTVILLVGLTGMLGNLMVIYTFCR 2 1 TRGLRTPSNMFIINLAVSDFFMSFTQAPVFFASSLHKRWLFGEA 1 2 GCEFYAFCGALFGITSMITLTAIALDRYLVITHPLAAVGVVSKRRAALVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFVFFLPLLVIVYCYVFIFRAIRETGQ 2 1 ALQTFRACEGGARSPRQRQRLQREWKMAKMELLVILLFVLSWAPYSAVALTAFAG 2 1 YSHVLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAQHLPCLGVLLGVSGQRTGPYASYRSTHRSTLSSQASDLSWISGRRRQASLGSESEV 0 0 GWMDTEAAAVWGAAQPAGGRFLCTQGLEDAEAKAPLRPRGQAVETPGK 0 0 TKGRLPSLDPSREGAHWLPPSPDPG* 0 >MEL1_felCat cat full 0 MNPPSGPRT QEPSCVATPASPSRWDGYRSSTSSLDQPLPISPT 0 0 AARAQAAAWIPFPTVDVPDHAHYTLGTVILLVGLTGILGNLMVIYTFCR 2 1 SRGLRTPANMFIINLAVSDFFMSFTQAPVFFASSLHKRWLFGEA 1 2 GCEFYAFCGALFGITSMITLMAIALDRYLVITHPLATIGVVSKRRAALVLLGVWLYALAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFVFFLPLLVIVYCYIFIFRAIRETGQ 2 1 ALQTFRACEGGGRSPRQRQRLQREWKMAKIELLVILLFVLSWAPYSIVALMAFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAQHLPCLGVLLGVSGQHTGPYASYRSTHRSTLSSQASDLSWISGRRRQASLGSESEV 0 0 GWMDTEAAAVWGAAQQVSGRFPCSQGLEDREAKAPVRPQGREAETPGQ 0 0 TKGLLPSQDPRM* >MEL1_bosTau (cow) XM_593123 mrna VMPT possible full 0 MNPPSGPRAPLGPVQESSCLATPASSSRWDSSRSSASSLGHPPSISPT 0 0 AVRAQAAAWVPFPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFASSLYKQWLFGEA 1 2 GCEFYAFCGALFGITSMITLTAIALDRYLVITRPLATVGMVSKRRAALVLLGVWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYVSFTPSVRAYTMLLFCFVFFLPLLIIIYCYIFIFKAIRETGQ 2 1 ALQTFGTCEGGSECPRQRQRLQNEWKMAKIELLVILLFVLSWAPYSTVALMGFAG 2 1 YAHILTPYMNSVPAVIAKASAIYNPIIYAITHPKYR 2 1 LAIAQHLPCLGVLLGVSGQRTGLYTSYRSTHRSTLSSQASDLSWISGRRRQASLGSESEV 0 0 GWMDTEATAAWGAGQQVSGWSPCSQRLDDVEAKALPRPQGRDSEAPGK 0 0 AKGLLPNLDARM* 0 >MEL1_susScr Sus scrofa (pig) VPT in transcript CX057760? 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFASSLYKQWLFGEA 1 2 VPT GCEFYAFCGAVFGITSMITLTAIALDRYLVITYPLATVGMVSKRRAALVLLGVWLYALAWSLPPFFGW 1 2 SAYVPERLLTSCSWDYVSFTPKVRAYTMLLFCFVFLLPLLVIIYSYIFIFKAIRETGr 2 >MEL1_equCab Equus caballus (horse) full 0 MNPPSEPQVPLGLAQEPGCVATPASPSRWSGSRSSTSSLGQPLPVGPT 0 0 AAGAQADAWVPFPTVDVPDHAHYTMGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFASSLYKQWLFGKA 1 2 GCEFYAFCGALFGITSMITLTAIALDRYLVITRPLATVGVVSKRWAALVLLGIWLYALAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMTFTPSVRAYTMLLMCFVFFLPLLVIVYCYVFIFRAIRETGR 2 1 ALQTFGAWEGGGECPRQRQRLQSEWKMAKIVLLVILLFVLSWAPYSVVALVAFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIIYAIIHPKYR 2 1 MAIAQHLPCLGVLLGVSSQRTRPYTSYRSTHRSTLSSQGSDLSWISGRRRQASLGSESEV 0 0 GWMDTEAAAVWGAAQQMSGWSPCGQGLEDMEAKAPPRPQGWEGEALRK 0 0 IKGLLPSLDPRM* 0 >MEL1_eriEur hedgehog frag 0 MALSLGPRVPTSQALDPSCMDTPASPSRWDSSQNSTSSLAQLPLISLT 0 0 QATASAPFPTVNVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR 2 1 SRSLRTPANMFIINLAVSDFLMSFTQTPVFFASSLYKQWLFGEA 1 2 GCEFYAFCGALFGITSMITLTAIALDRYLVITRPLATIGVVSKRRVALVLLGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMRFTPSFRAYTMLLFCFVFFLPLLVIIYCYIFIFRAIRETGQ 2 1 ALQTFRACEGSCDFPRQQQRLQSEWKMAKIILLVILLFVLSWAPYSTVALMAFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAQHLPCLRVLLGVSGQRDRPYTSYRSTHRSTLSSQISDLSWVSRRRRQASLGSESEV 0 0 GWTDTEVAAVWGT MSGHFPCGQGLDDMEAKAAHNPRGLEAETPGK 0 0 IKGLLPSLDPQM* 0 >MEL1_loxAfr (elephant) ok frag 0 MNPPWGPRVPSGRAQEPSCVATPASASRWNSSRASASSLGELPPSSPT 0 0 AARAHTAAWDPFPTVDVPDHAHYTLGAVILLVGLMGMLGNLMVIYIFFR 2 1 SRGLRTPANMFIINLAVSDFLMSFTQAPVFFASSLYKRWLFGEA 1 2 GCKFYAFCGALFGITSMITLTAIALDRYLVITRPLATIGVVSKRRAALVLLGIWLYALAWSLPPFFGW 1 2 sAYVPDGLLTSCSWDYMSFTPSFRAYTMLLCCFVFFLPLLVIIYCYIFIFKAIRETGR 2 1 ALQTFGACEGASESPRQWQRLQSEWKMAKIALLAILLYVLSWAPYSTVALVAFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAQHLPCLGVMLGVSGQRTRPYTSYHSTLHSTLSSQASDLSWISGRRRQASLGSESEV 0 0 GWTDTEAAAAWEGAQQVSGQASCSQALQNLEANTPPRPQGWGPETPRK 0 0 * 0 >MEL1_echTel (tenrec) frag 0 MNLPSGSRVPSGPAQEPSHVATAASASRNSGSSLDVPPPSSPT 0 0 AARAPTAASAPFPIVDVPDHVHYTLGTVILLVGLTGMLGNLMVIYTFCR 2 1 SRSLWTPANMLIINLAVSDFLMSFTQASVFFTSSLYKQWLFGEA 1 1 SRSLRTPANMLIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGEA 1 2 GCEFYAFCGALFGITSMITLTAIALDRYLVITRPLATIGVVSKRRAALVLLVIWLYALAWSLPPFFGW 1 2 SAYVPDGLLTSCSWDYMSFTPSVRAYTMLLFCFVFFLPLLVIIYCYIFIFRAIRETGR 2 1 ALQTFGACEGSRDSPRQRQRLQSEWKMAKIALLVISLFVLSWAPYSTVVLVAFA 2 0 GWTDTEVTATSGYTQQVSGRCPRGQDLESMDANPTPRPRGWETETAQK 0 0 IKGLPLSLNPQA* 0 >MEL1_Procavia_capensis (hyrax) ok frag 0 MNPPWGPRVSSRPAQEPSCMSTPASAGRWDNSQATASSLAELPPSSPT 0 0 EARTQTADWVPFPTVDVPDYAHYTLGTVILLVGLTGVLGNLMVIYIFFR 2 1 SRGLRTPANMFIINLAISDFLMSLTQAPVFFASSLYKRWLFGEA 1 2 GCEFYAFCGALFGITSMITLTAIALDRYLVITRPLATIGVVSKRRTALVLLGTWLYALAWSLPPFFGW 1 2 SAYVPDGLLTSCSWDYKSFMPSARTYTMLLCCFVFFLPLLVIIYCYVFIFKAIRETGR 2 1 ALQTFGACEGASETPRQWQRLQSEWKMAKIALLAILLYVLSWAPYSTVALVGFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAQHLPCLGVLLGVSDQHTRPYTSYRSTHHSTLSSQASDISWISGRRRQASLGSESEV 0 0 GWTDTEAAAAWEGAQQVSGRASCSQVLESMEANTPPRPQGWGPETPRK 0 0 * 0 >MEL1_dasNov Dasypus novemcinctus so-so frag sloth weak frag 0 MDPPSGPSVLTGGPSWGATPASPSGWDGSRSSTSSLHGRPPTSPL 0 0 AAGARAAAWDPFPTADVPAHAHYTLGSVILLVGLTGTLGNLTVIYTFCR 2 1 SRGLWTTANTFVINLAVSDLLMSITQAPVFFASSLYKQWIFGET 1 2 GCEIYAFCGALFGIASMMTLLAISLDRYLVITRPLAATGVVSRRRALLALPGIWLYALAwSLPPFFGW 1 2 SAYVPEGLLTSCSWDYSSFSPSARAYTMLLFCCVFLLPLLAIVYCYICIFRTIRETRR 2 1 ALQNLRAGEGASPLPGQR LQSEWRTAKITLLVVLLYVLSWAPYSTVALVAFAG 2 1 YAHVLTPYMNSVPAVIAKASAIHNPIVYAITHPEYR 2 1 MAIAQHLPCLGLLLGVLGHRPRPGSSPGSTRCSAHSGQASGLSWISRQRRRASLGSKDEV 0 0 GWEDVEAAAASGAAGQESGRSPRAQDLEHMEAEAARWPSWEAEPEK 0 0 * 0 >MEL1_monDom Monodelphis domestica (opossum) Gq 0.0.1.2.2.1.1.1.0.0 indel -GRID1 -WAPAL +LDB3 +BMPR1A full 0 MNPSPMLRGLSCPAQDTNCTKIMASMSEWNNTEEDAYHLVDLPSIAPT 0 0 AVVLPPSSQNIFPTADVPDHAHYTIGATILAVGFTGVLGNLLVIYTFCR 2 1 SHSLRTPANMFIINLAISDFFMSFTQAPVFFASSMYKRWIFGEK 1 2 ACEFYAFCGALFGITSMITLMAIALDRYFVITRPLASIGVISKKKTGFILLGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYTTFTPSVRAYTMLLFCFVFFIPLIVIIYCYIFIFRAIQDTNK 2 1 AVHSIGSGESTASPRHCQRMKNEWKMAKIALVVILLYVLSWAPYSTVALVAFAG 2 1 YSHILTPYMNSVPAIIAKASAIHNPIIYAISHPKYR 2 1 MAIAQNFPCLRALLCVRHPRTRSFSSYRFTRRSTMTSQASDISWLPRGRRQLSLGSESEI 0 0 GWNNMEAGTTSLTSRNQQGSCRMDQETMETRELAAIAKAKGRSWETLEK 0 0 TLEEMDDSSLLEVSVDMEQ* 0 >MEL1_smiCra Sminthopsis crassicaudata (fat-tailed dunnart) 17785267 full 0 MNPSPMLRHLSCPAQDSNCTKIMASISEWNNTEVDAYHLVDLPPITPT 0 0 AVVLPPYSQKVFPTADVPDYAHYTIGATILVVGFTGVLGNLLVIYTFCR 2 1 SRSLRTPANMFIINLAISDFFMSFTQAPVFFASSLYERWIFGEK 1 2 GCEFYAFCGALFGITSMITLMVIALDRYFVITRPLASIGMISKKKTGLILLGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYTTFTPSVRAYTILLFCFVFFIPLTVIIYCYIFIFRAIKDTNK 2 1 AVQNIGSSEHTPSLRHFQRMKNEWKMAKIALVVILLFVLSWAPYSTVALVAFAG 2 1 YSHVLTPYMNSVPAIIAKASAIHNPIIYAISHPKYR 2 1 MAIAQNFPCLRAVLGIRHPRTQSFSSYRFTHRSTTASQASDISWQSRGRRQLSLGSESEA 0 0 GWNNIETGLTLRSLEGSCGMDEETMDTRELSASTKAKGQSWETLAK 0 0 TLEEMDDLSLLEAGTLLSSLDLQI* 0 >MEL1_macEug Macropus eugenii high id frag 0 AVVLPPHSRNIFPTADVPDHAHYTVGAIILVVGFTGVLGNLLVIYTFCR 2 1 SRSLRTPANMFIINLAISDFFMSFTQAPVFFANSLYKRWIFGEK 2 2 GCEFYAFCGALFGITSMITLMVIALDRYFVITRPLASIGVVSKKKTGLILLGVWLYSLAWSLPPFFGW 1 2 AYVPEGLLTSCSWDYTTFTPSVRAYTMLLFCFVFFIPLIVIIYCYIFIFKAIQDTNK 2 1 ALQNIRSSESTASPRHFQRMKSEWKMAKIALVVILLFVLSWAPYSTVALVAFAG 2 1 SHILTPYMNSVPAIIAKASAIHNPIIYAISHPKYR 2 >MEL1_ornAna (platypus) ok frag 0 0 0 GEASLPSSYHAFPTVDVPDHAHYTIGAIILAVGITGMLGNFLVIYTFCR 2 1 SRSLRTPANMFIINLSISDFFMSLTQAPVFFASSLHKRWIFGEK 1 2 GCQLYAFCGALFGITSMITLTVIALDRYFVITRPLASIGVISKKRALLILTGVWFYSLAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYMTFTPPVRAYTMLLFCFVFFIPLIMIIYCYFFIFRAIRGTNK 2 1 AVETIGSDDCRGSQRQCQRMKNEWKTAKIALMVILLYVISWCPYSVVALVAFAG 2 1 YSHLLTPYMNSVPAVIAKSSAIHNPIIYAITHPKYR 2 1 MAITKYIPCLGPLLRVSRQDSRSSSHYASSRRSTVTSQSLDGSWLPGRRRPLSSASDSES 0 0 GWTDTAADAGSASSRAASRQVSYRMSQGPTEHCDLRAKVKPKSWEVGSFQK 0 >MEL1_galGal Gallus gallus (chicken) -GRID1 -WAPAL +LDB3 +BMPR1A OPN4m EU124633 EU124632 full 0 MDLPPRAPT 0 0 KMTVKDVRGAFPTVDVPDHAHYTIGTVILIVGITGTLGNFLVIYAFCR 2 1 SRTLQKPANIFIINLAVSDFLMSITQSPVFFTNSLHKRWIFGEK 1 2 GCELYAFCGALFGITSMITLMVIALDRYFVITKPLASVRVMSKKKALIILVGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMTFTPSVRAYTMLLFCFVFFIPLIAIIYSYVFIFEAIKKANK 2 1 SVQTFGCKHGNRELQKQYHRMKNEWKLAKIALIVILLYVISWSPYSVVALVAFAG 2 1 YSHVLTPFMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 TAIATYVPCLGFLLRVSPKESRSFSSYPSSRRTTITSQSSETSGLQKGKRRLSSISDSES 0 0 GCTDTETDITSMISRPASSQVSYEMGEDTTQTSDLGGKPKVKSHDSGIFgk 0 0 aVVDADEIPMVEINDTEHSATST 0 0 CKTSEKCNVEEIQ 0 0 RSESLSGIGLREGESRrRTSASQIPSIIITYSNVQGVELpSGYSAGFLHPKNKSHiQNKSSNS* 0 >MEL1_taeGut Taeniopygia guttata frag 25% melatonin receptor 0 0 0 KMTVQDVPRAFPTVDVPDHAHYTIGVVILIVGITGTLGNFLVFYAFCR 2 1 SRSLQTPANILIINLAISDFLMSITQSPVFFTSSLYKHWIFGEK 1 2 GCELYAFCGALFGITSMITLMVIALDRYFVITKPLASVGVTSKKKALIILVGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCSWDYMTFTPSVRAYTMLLFCFVFFIPLIAIIYSYVSIFEAIKKANK 2 1 SIQTFGCKRGNREFQKQYQRMKNEWKMAKIALIVILFFVISWSPYSVVALVAFAG 2 1 YSHVLTPFMNSIPAVIAKASVIHNPIIYAITHPKYR 2 1 KAIATYVPCLGPLLRVSPKDSRSFSSYHSSRRATISSQSSEISGLQERKRRLSSLSDSES 0 0 GCTETETDTPSMFSRLARRQISYKTDKDTTQTSDIRAKLTSQDSGWGVAK 0 0 0 0 KSESLNSIGQRREFHQGSSSAQIPSITITCSSVQGIELPSRYNSGFLYPKSSSHKQNKKSSS* 0 >MEL1_anoCar diverged frag VG* option supports chicken oddity, mammalian is the one with the weird new terminal exons 0 ERTMFNLPDPFPTVDVPTHAHYTIGAVILVVGITGTLGNLLVIYVFFR 2 2 GCELYAFCGALFGIASMITLTVIALDRYFVITRPLASIGAMSTKKALLILSGVWLYSLAWSLPPFFGW 1 2 sAYVPEGLLTSCSWDYITFTPSVRAYTMLLFCFVFFIPLIAIIYSYVFIFIAIKNSNR 2 1 RAVQRTNSDNSKEGQKLYQKLKNEWKMAKVALIVILLYVISWSPYSVVALVAFAG 2 1 YSHLLTPYMNSVPAVIAKASVIHNPIIYAIVHPKYR 2 1 MAIAKFLPCLGSLLRVPRKDSSYPSTRRPTVTSQSSDINGVPRGHRRLSSVSDSES 0 0 DWTDTEADISSQNSRVASGSISYRIYEDTTETIKVKSKMRSHDSGIFER 0 0 TSVDADDISMVEVNIRDYCFSI 0 0 TGEDLNAFGWRREESYSGPSTSSQIPSIIVTFSNVQRTDLPLESSSGALCSRNSSYSWEKDSNS 0 >MEL1_xenTro Xenopus tropicalis (frog) Gq 0.0.1.2.2.1.1.1.0.0 indel -GRID1 -WAPAL +LDB3 +BMPR1A 596 aa 000 nm 16856781 DQ384639 melanopsin OPN4m 0 MNYQSVRKGITCPPQDANCSRILESLNSWNNSEVNSYKLVELPPIVTT 0 0 ETPQYEIHHVYPTVDVPDHVHYVVGAVILAVGITGMLGNFLVIYAFCR 2 1 SRSLRSPANMFIINLAITDFLMSVTQAPVFFATSLHKRWIFGEK 1 2 GCELYAFCGALFGITSMITLMVIAVDRYFVITRPLTSIGVMSKKRAVLILSGVWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFCFVFFIPLFIIIYCYIFIFKAIKNTNR 2 1 AVQKIGTDNNKESHKQYQKMKNEWKMAKIALIVILLYVVSWSPYSTVALLAFAG 2 1 YASILTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAKYIPCLGSLLRVKRRDSRSYSSYPSSRRSTVTSHCSQSSDVGGHPKLKNHLPSVSDSES 0 0 GWTDTEADSSVNSRPASRQVSYEMGKDTTETNDLKSKAKLKSHDSGIFEK 0 0 TSMDADDISLVELGTVDRSSPIM 0 0 ANKHLNGLGQRKGDSFTRRSPSSRIPSIVVTHSNHQGSPAAVRHNSTLPGIKVSNSQDREKELKRQIEKVKQYVPIVTITSDTENSTGGFSNELLPANTS* 0 >MEL1a_danRer Danio rerio (zebrafish) Gq 0.0.1.2.2.1.1.1.0.0 indel - +USP54 +LDB3 +BMPR1A no_ref AY078161 melanopsin OPN4m 0 MMSGAAHSVRKGISCPTQDPNCTRIVESLSAWNDSVMSAYRLVDLPPTTTTTTSVA 0 0 MVEESVYPFPTVDVPDHAHYTIGAVILTVGITGMLGNFLVIYAFSR 2 1 SRTLRTPANLFIINLAITDFLMCATQAPIFFTTSMHKRWIFGEK 1 2 GCELYAFCGALFGICSMITLMVIAVDRYFVITRPLASIGVLSQKRALLILLVAWVYSLGWSLPPFFGW 1 2 SAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFIFVFFIPLIVIIYCYFFIFRSIRTTNE 2 1 AVGKINGDNKRDSMKRFQRLKNEWKMAKIALIVILMYVISWSPYSTVALTAFAG 2 1 YSDFLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 LAIAKYIPCLRLLLCVPKRDLHSFHSSLMSTRRSTVTSQSSDMSGRFRRTSTGKSRLSSASDSES 0 0 GWTDTEADLSSMSSRPASRQVSCDISKDTAEMPDFKPCNSSSFKSKLKSHDSGIFEK 0 0 SSSDVDDVSVAGIIQPDRTLTN 0 0 AGDITDVPISRGAIGRIPSIVITSESSSLLPSVRPTYRISRSNVSTVGTNPARRDSRGGVQQGAAHLSNAAETPESGHIDNHRPQYL* 0 >MEL1b_danRer Danio rerio (zebrafish) Gq 0.0.1.2.2.1.1.1.0.0 indel - +USP54 +LDB3 +BMPR1A 4 no_ref genome melanopsin OPN4m 0 VAMVQDVRHPFPTVDVPDHAHYTIGSVILAVGITGMVGNLLVMYAFCK 2 1 SRSLRTPANMFIINLAVTDFLMCVTQTPIFFTTSLHKRWIFGEK 1 2 GCELYAFCGALFGICSMITLMIIAVDRYFVITRPLASIGVMSRKRALLILSAAWAYSMGWSLPPFFGW 1 2 SGAYVPEGLLTSCSWDYMTFSPSVRAYTMLLFTFVFFIPLFVIIYCYFFIFKAIRETNR 2 1 AVGKINGEGGPRDSIKKIHRMKNEWKMAKIALIVILLYVISWSPYSCVALTAF 2 1 YADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 SAIAKYIPCLGVLLCVPRRDRFSSSSFISTRRSTLTSQSSETSSNLHRAGKARLSSVSDSES 0 0 GWTDTEADLSTASSRPASRQVSSEIRKDLCDIKHSSSLRLKVKSRDSGIFDR 0 0 0 0 QNDVSEKADEKRPLVRIPSIIVTSETCPAVLPAGHSSRLIPGAPAVTDS* 0 >MEL1_rutRut Rutilus rutilus (roach minnow) 0 MSHHSSWRGHHCAPGDNNCTAGFKESLGSKNYKLLHVPFHGPT 0 0 HSHHHEPPHPFPTVDVPDHAHYIIGAVILIVGITGVIGNALVIYVFCR 2 1 SRTLRTAGNMFVVNLAVADFFMSLTQSPVFFAASLHRRWIFGER 1 2 ICELYAFCGALFGICSMMTLTAIAADRCLAITQPLALVGNVSRRKAGAVLAVVWLYSLGWSLPPFFGW 1 2 SAYVPEGLQTSCSWDYMTFTPSVRAYTILLFIFVFFIPLGIIVSCYVGIFQAIRAMG 2 1 KEIRELDCGETQKVYERMQNEWKMAKIALLVILLFVISWSPYSVVALTATAG 2 1 YSHLLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 AAIARYIPVLRTILRVKEKELRSSFSSGSVSSRRPTLSSQCSLGVSIGNAARANGRWGKKRLSSASDSDS 0 0 CWTESEADGSSVSSLTFGRRVSTEISTDTVILSPGSSNSTASGQKSEKAHKVVSVPVPSITFETDSADESLSDGKALLLGGN* 0 >MEL1_astBur Astatotilapia burtoni cichlid EU523855 0 MSHIHSSRKSALCPLGGNCTEHHHQVRMSKLLHLPDHAPT 0 0 QSARAQSHLFPTVDVPDHAHYIIGSVILLVGVTGMLGNALVIYVFCR 2 1 SRTLRSPSNLLVVNLAAADFLMSLTQSPVFFVASLHHRWVFGEL 1 2 ACELYAFCGALFGITSMITLTAIAVDRCLAITRPLAMLGGVSHQRVLVVVAVVWLYSLGWSLPPFFGW 1 2 SAYVPEGLQTSCSWDYMSFTAAVRTYTLLLFSFVFFIPLAVIAACYFAIFRAVQQAG 2 1 REIEQLNCGEVNKAYERLRSEWRMAKVALVVILLFIVSWSPYSVVALTATAG 2 1 YAHLLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 AAIGHYVPFLRSVLRLQEKDLRSSFSSSATSSRCTTFTSSPKGRLNASVRTNGHQAQNRLSSVSDSKSCWMESDADGSSRRSERQAFSEATANPLDSTTPRQHVGHTDASSSDGAVLEAKLPL* 0 >MEL1_takRub Takifugu rubripes (teleost) Gq 0.0.1.2.2.1.1.1.0.0 indel - +USP54 +LDB3 +BMPR1A 555 aa 000 nm no_ref genome melanopsin OPN4m 0 MNFGKSALQPPAQQSVVSCGGGGPEPNCTLRLAVTVMMSVRLAELQLHAST 0 0 LQVAMVRPFPTVDVPDHAHYTIGSVILVIGITGMIGNFLVIYAFCR 2 1 SRSLRTPANMFIINLAVTDLLMCVTQTPIFFTTSMYKRWIFGEK 1 2 GCELYAFCGALFGICSMITLTVIAIDRYFVITRPLTSIGVLSRKRAFVILMTVWIYSLGWSLPPFFGW 1 2 SAYVPEGLLTSCTWDYMTFSPSVRAYTMLLFIFVFFLPLFIIIYCYFFIFRAIRATNK 2 1 AVGKVNGSVHSHSRRRESVKNFQRLQNEWKMAKIALMVILLYVISWSPYSCVALTAFAG 2 1 YADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 LALAKYIPCLGFLLCISPHELQSTSSSFMSLRRSTVTSQTSDISGQFRPQSKPRRSSASDSES 0 0 CLTDTEADLSSMGSRPASRQVSCDISRDTTELPEYKPASSFNSKVKSPDSGIFEK 0 0 TSFDFDASMAASRERSSIPN 0 0 SGEFPEGHVMRRTLARIPSIIITSESSHFLPNGRKASSTTCIANGSDIKVGPR* 0 >MEL1_gasAcu Gasterosteus aculeatus (stickleback) Gq 0.0.1.2.2.1.1.1.0.0 indel - - +LDB3 +BMPR1A 556 aa 000 nm no_ref genome melanopsin OPN4m 0 MNAGESELLLPTQQSILPCGDHEPNCPVAQAETLALSAASANGSA 0 0 VQVAMVSRAPHPYPTVDVPDHAHYTIGSVILAIGITGIIGNVLVIYAFSK 2 1 SRSLRTPANMFIINLAITDLLMCVTQAPIFFTTSMHKRWIFGEK 1 2 GCELYAFCGALFGICSMITLTVIALDRYFVITRPLTSIGMMSRRRALLILMGAWTYSLGWSLPPFFGW 1 2 SAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFIFVFFLPLFIIIYCYFFIFRAIRVTNR 2 1 AVGKMNGSIHSHGSGRDSTKNFHRLQNEWKMAKIALIVILLYVVSWSPYSAVALTAFAG 2 1 YADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 IALAKYIPFLGVLLCVPPRELRSASSSFRSTRRSTVTSQTSDVSSQQRRQGSRNSRLSSASDSES 0 0 CLTDTEADGSSVGSRPASRQVSCDIGRDTAELPEFKPSSSFKSKMKSHDSGIFEK 0 0 SYDTDISMAGVSERGSIPN 0 0 QTDFAEGRDRRSTIGRIPSIVITSETSPFLPTGRNGSCNGRPKTANSSHPGAGSG* 0 >MEL1_oryLat Oryzias latipes (medaka) Gq 0.0.1.2.2.1.1.1.0.0 indel - +USP54 +LDB3 +BMPR1A 504 aa 000 nm no_ref genome melanopsin OPN4m 0 LQVAMVPQTFHPFPTVDVPDHAHYTIGSVILAIGITGIIGNFLVIYAFSR 2 1 SRSLRTPANMFIINLAITDLLMCVTQSPIFFTTSMHKRWIFGEK 1 2 GCELYAFCGALFGICSMITLTVIAIDRYFVITRPLTSIGVLSRKRALLILSAAWAYSLGWSLPPFFGW 1 2 SAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFIFVFFLPLFIIIYCYVFIFRAIRSTNR 2 1 AVGKINGNTRDAVKSFNRLQNEWKMAKIALIVILLYVISWSPYSTVALTAFAG 2 1 YADMLTPYMNSIPAVIAKASAIHNPIIYAITHPKYR 2 1 MALAKYIPGLGVLLCIHPKDLRSASSSFVSTRRSTVTSQSSDISSQLRRQSTFKSRLSSLSDSES 0 0 GLTDTEADLSSLSSRPASRQVSCEISRDTAELPDFKHTSSFKAKLKNNDSGIFEK 0 0 TSFDTVSIGGVSEHNSIPS 0 0 NRDFGDGNVTRATIGRIPSIVVTSEMSPFLPVGRNGSRTNRSKMANSSAGAGPV* 0 >MEL1a_calMil Callorhinchus milii (elephantfish) Gq 0.0.1.2.2.1.1.1.0.0 indel - - - - 369 aa 000 nm no_ref genome melanopsin OPN4m 0 ASVTDAQHHHMFPTVDVPDHAHYIIGATILAVGVTGMVGNFLVIYAFLR 2 1 SRSLRTPANTFIINLAATDFLMSVTQSPIFFITSIHKRWIFGEK 1 2 GCELYAFCGALFGITSMITLMVIALDRYFVITRPLASIGVLSHRRAGLIILSLWLYSLAWSLPPFFGW 1 2 SAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFCFVFFIPLGVIIYCYIFIFRAIKSTNK 2 1 KVGGSTNRESQKQHQRMKNEWKMAKIALIVILLFVISWSPYSTVALTAFAG 2 1 YADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYR 2 1 MAIAKYVPLLGLLLRVSRRDSRTSGQYYSTRRSTLTSQTSDLSGYPRGKGRLSSASDSES 0 >MEL1b_calMil Callorhinchus milii (elephantfish) Gq 0.0.1.2.2.1.1.1.0.0 indel x x x x 113 aa 000 nm no_ref EB687868 melanopsin OPN4m 1 SKSLRTPANMFIINLAISDFFMSATQPPVFFVTSLHKRWIFGEK 2 GCKLYAFCGALFGITSMITLMAISIDRYWVITKPLQSISSTTTKKNTLKVIILVWLYSLAWSLPPLLGW 1 >MEL1_petMar Petromyzon marinus (lamprey) first exon uncertain frag 0 MAPSIVPLMRKLSCPLSRKTPPKHNVSTSMFDGGDGVLGVIGSIP 0 0 VSFLPSQREKFPMLDIPHHVHHTIGSVVIAIGFTGIIGNFLVIYVFCR 2 0 VQVAMVSRAPHPYPTVDVPDHAHYTIGSVILAIGITGIIGNVLVIYAFSK 2 1 SKSLRSPANIFIINLAFADFFMSITQTPIFFVTSLHKRWIFGEK 1 2 GCELYAFCGALFGIASMVTLMVIATDRYLVLTRPLASIGAMSKRRAMYITAAVWFYSLAWSLPPFFGW 1 2 SAYVPEGLMTSCTWDYVTFTPAVRSYTMLLFCFVFFIPLIVIIFCYVRIFAAIKNTNR 2 1 AVKTLGDAHDSKESQKQQQRMNAEWKLAKIALIVILLYVVSWSPYSCVALVAWAG 2 1 YADMLTPYMNSVPAIIAKASAIHNPIVYAITHPKYR 2 >MEL1a_braFlo Branchiostoma floridae (amphioxus) Gq 0.0.1.2.2.1.1.1.0.0 indel - - - - 709 aa 000 nm no_ref genome melanopsin Amphi-mop 12 exons +tandem dup assembly error 0 MTELPSFQPPTNSTEEENAVFPTALTEWISE 0 0 VGNQVGEAALKLLSGEGDGMEVTPTPGCTGNASVCNGTDSGGGVVWDIPPLAHYIVGTAVFCVGCCGMFGNAVVVYSFIK 2 1 SKGLRTPANFFIINLALSDFLMNLTNMPIFAVNSAFQRWLLSDF 1 2 ACELYGFAGGLFGCLSINTLMAISMDRYLVITKPFLVMRIVTKQR 0 0 VMFAILLLWIWSLVWALPPLFGWSAYVPEGF 1 2 GTSCTFDYMTPKLSYHIFTYIIFFTMYFIPMGVIIYCYYNIFATVKSGDKQFGKAVKEMAHEDVKNK 0 0 AQQERQRKNEIKTAKIAFIVITLFLSAWTPYAVVSALGTLGYQDLVTPYLQSIPAVFAKSSAVYNPI 1 2 VYAITHPKFRAAVKKHIPCLSGCLPADEEETKTKTRGATTTASMSMTQTTAPTV 0 0 HDPQASVHSGSSVSVDDSSGVSRQDTMMVK 0 0 VEVDNRMEKAGGGAADTAPKDGTSVPTVSAQIEVRPSGNVNTKAEVIPSPQSAAVAHGASASPVPK 0 0 VAELSSSVSLESAAIPGKIPTPLPSQPIAAPIERHMAAMADDPPPKPRGVATTVNVRRSESGYERSQDSLRKK 0 0 AVSETRSRSFNSTKDHFASERQTSTTLNQPRDMYSGDMVKKTRQSPEKQEYDNPAFDAGIAEIDTDSENETEGSYDMLSVRFQAMAEEPPVETYRKASDMSINLGKASLMLTEAHDETVL* 0 >MEL1a_braBel Branchiostoma belcheri (amphioxus) Gq 0.0.1.2.2.1.1.1.0.0 indel x x x x 707 aa 000 nm 15936279 AB205400 melanopsin Amphi-mop 0 MTEIPSFQPPINATEVEEENAVFPTALTEWFSE 0 0 VGNQVGEVALKLLSGEGDGMEVTPTPGCTGNGSVCNGTDSGGVVWDIPPLAHYIVGTAVFCIGCCGMFGNAVVVYSFIK 2 1 SKGLRTPANFFIINLALSDFLMNLTNMPIFAVNSAFQRWLLSDF 1 2 ACELYGFAGGLFGCLSINTLMAISMDRYLVITKPFLVMRIVTKQR 0 0 VMFAILLLWIWSLVWALPPLFGWSAYVSEGF 1 2 GTSCTFDYMTPKLSYHIFTYIIFFTMYFIPGGVMIYCYYNIFATVKSGDKQFGKAVKEMAHEDVKNK 0 0 AQQERQRKNEIKTAKIAFIVISLFMSAWTPYAVVSALGTLGYQDLVTPYLQSIPAMFAKSSAVYSPI 1 2 VYAITYPKFREAVKKHIPCLSGCLPASEEETKTKTRGQSSASASMSMTQTTAPV 0 0 HDPQASVDSGSSVSVDDSSGVSRQDTMMVK 0 0 VEVDKRMEKAGGGAADAAPQEGASVSTVSAQIEVRPSGKVTTKADVISTPQTAHGLSASPVPK 0 0 VAELGSSATLESAAIPGKIPTPLPSQPIAAPIERHMAAMADEPPPKPRGVATTVNVRRTESGYDRSQDSQRKK 0 0 VVGDTHRSRSFNTTKDHFASEQPAALIQPKELYSDDTTKKMARQSSEKHEYDNPAFDEGITEVDTDSENETEGSYDMLSVRFQAMAEEPPVETYRKASDLAINLGKASLMLSEAHDETVL* 0 >MEL1b_braFlo Branchiostoma floridae (amphioxus) Gq 0.0.1.2.2.1.1.1.0.0 indel - - - - 402 aa 000 nm no_ref genome melanopsin Amphiop6 0 MSPNLTNTSLLPNRTDRPELSPADVTMQLVFGSMMLVFGLIGVVGNAVALYAFCR 2 1 SRSLRRPKNYLIANLCLTDMVVCLVYSPIIVTRSLSHG 2 1 LPSKESCIVEGFVVGLGSIVSICSLAGIAVERYVTITQPIKSLSILTHRALLGAVSAVWVYAFLLAFPPLVGWGRYVSEESKISCTFDYLSTDDATRAHVIVLVIGAFGLPFS VITYCYVRSFATVRKCTKERKQMSPLAKSDSRSEVKAAVNSFVITTSFCLCWCPYAVVATMGVSGFTVHSHAVFIAALLAKLSVLFNPVAYVLSIP 1 2 NSNVNIESTELTVPYSASRESCLLSRAATERLAGRSPSLTDIVREFGLQQTASHRE >MEL1b_braBel Branchiostoma belcheri (amphioxus) Gq 0.0.1.2.2.1.1.1.0.0 indel x x x x 402 aa 000 nm 12435605 AB050611 melanopsin Amphiop6 0 MSSNLTNVSLVANRTDQTELSPTDVTMQLIFGSMMLVFGLIGVVGNVVALYAFCR 2 1 TRSLRRPKNYVVANLCLTDMFVCLVYCPIVVSRSFSHG 2 1 FPSKESCIVEGFMVGVGSIASICSLAAIAVERYLSVTQPLKSLTILTQRKLLVAVLTVWVYSLLLAFPPLVGWGRYVREETYISCTFDYLSTDDATRAYVITLVMGAFGFPLL TIAYCYIRVFTTARKHAEERKFMSPLKRPESRTEIKTAVTACVITTSFCLCWCPYAVVATLGISGVSVQQQTVFSAALLAKLTVIINPIVYVLSIPNFRKALFAQEREKYASED VVLTSLPGKTRRMKKVERSQSSNSNVVIEVKESSMAYSTSRESCLLSRAATKRLAGKTKSIVDLVDEFGLQETAPHKESLV* 0
== Reference set of MEL2 melanopsins lost after archaeosaurs == >MEL2_galGal Gallus gallus (chicken) Gq 0.0.1.2.2.1.1.1.0.0 indel +GRID2 +SMARCAD1 -PGDS -SEC24B +COL25A1 544 aa 000 nm 17977531 NM_204625 full 0 MGTQPHSVTKSEIPDHVLYTVGTCVLVIGSIGIIGNLLVLYAFYS 2 1 NKKLRTPQNFFIMNLAVSDFLMSASQAPICFVNSLHREWILGDI 1 2 GCDLYAFCGALFGITSMMTLLAISVDRYLVITKPLRSIQWTSKKRTIQIIAAVWLYSLGW 1 2 SVAPLLGWSSYVPEGLMISCTWDYVTYSPANRSYTMILCCCVFFIPLIIILHCYLFMFLAIRSTGR 2 1 DVQKLGSCSRKSFLSQSMKNEWKLAKIAFVVIIVYVLSWSPYACVTLIAWAG 2 1 RGNTLTPYSKSVPAVIAKASAIYNPIIYAIIHPRYR 2 1 KTIHNAVPCLRFLIRISKNDLLRGSINESSFRTSLSSHQSLAGRTKNTCVSSVSTGEA 0 0 NWSDVELDTVEPAHEKLQPRRSHSFSSSLRQKRDLLPDSYSCSEETEEK 0 0 VSLSSSYLEKVLGRSAFPSSPVALVTSSLRAASLPVGLNSSSASRGAGSDISQMKTEESHNNGGLDSIVSNTVPQIIIIPTSETNLFQEEPEEEETELFHFHDKKNNLLDLEGLSSSTEFLEAVEKFLS* 0 >MEL2_taeGut Taeniopygia guttata weak last exon full 0 MSTQPHTVTKAEIPGHILYTVGTCVLIIGSIGIIGNLLVLYAFYR 2 1 SNKKLRTPQNYFIMNLAVSDFLMSASQAPICFVNSLHREWILGDI 1 2 GCNLYAFCGALFGITSMMTLLAISVDRYLVITKPLQSIQWTSKRRTVQIIALVWLYSLGW 1 2 SVAPLLGWSSYVPEGLMISCTWDYVTYSPANRSYTMILCCCVFFIPLVIIFHCYLSMFLAIRRTGR 2 1 DVQNLGSCSRKSYVSQSIKNEWKLAKIAFVVIIVFVLSWSPYACVTLIAWAG 2 1 RGNSLTPYSKSVPAVIAKASAIYNPIIYAIIHPRYR 2 1 KTIHQAVPCLRFLIRISKNDLLRGSINESSFRTSLCSHHSLAGKTKSICVSSISTGEA 0 0 TWSNVELDPVEPAQEKLKPRRSNSFSTSLRQEKRDLLPKTCSYDAATAQK 0 0 VSLSSSCLEKVLGQPVLPSPSAGLITSSLRATSLPVRLNSSRATTGDSSISHMATQESP RIIIIST QNHLFRKNWKRRD QKGNLLDLEGLSSSMEFFEAVEKFLS* 0 >MEL2_anoCar Anolis carolinensis (lizard) Gq +GRID2 +SMARCAD1 -ATOH1 +PDLIM5 +BMPR1B 0 MGPHHRTKVDVPDHVLYTVGSCVLVIGCIGITGNLLVLYAFYS 2 1 NKRLRTPPNYFIMNLAVSDFLMSATQAPICFLNSMHKEWVLGDI 1 2 GCNLYAFCGALFGITSMITLLAISVDRYCVITKPLQSIKRTSKKRTCIIIVFVWLYSLGWSVCPLFGW 1 2 SSYIPEGLMISCTWDYVTYSPANRSYTMMLCCCVFFIPLVIIFHCYIFMFLAIRSTGR 2 1 RKSSISHSIKSEWKLAKIAFVAIVVFVLSWSPYACVTLISWAG 2 1 YARTLTPYSKSVPAVIAKASAIYNPIIYAIIHPRYR 2 1 RTIRSAVPCLRFLIPISKSDLSTSSMSESSFRASVSSRHSFSYRNKSTYISSISAKET 0 0 TWCDVELDPVESGHKKLQAYRSNSFSAKGVAEEESGLLLRTNNCNVPARKK 0 0 VALSSISLEESHAQSFGGNSSELLLLSSSLKTSSLPFGLNGSSTGESTDTSQLEGQENQINGSLDSFTSPILPQIIIIPT SETNLSEGQAEPENAQDENIDLFFSQGKNHLLDIGRLSSSTELLEAIEKLLS* 0 >MEL2_podSic Podarcis sicula (wall lizard) 16688437 Cterm not full 0 MGTQHRIKVDVPDRVLYTVGSCVLVIGSIGITGNLLVLYAFYS 2 1 NKRLRTPANYFIMNLAASDFLMSATQAPICFLNSMHTEWILGDI 1 2 GCNFYVFCGALFGITSMMTLLAISVDRYCVITKPLQSIKRSSKKRSCIIIAFVWLYSLGWSVCPLFGW 1 2 SSYIPEGLMISCTWDYVSYSPANRSYTMMLCCFVFFIPLIIIFHCYLFMFLAIRSTGR 2 1 NVQKLGSTYNRKSNVSQSVKSEWKLAKIAFVAIVVFVLSWSP 2 1 YACVTLIAWAGYAKTLNPYSKSVPAVIAKASAIYNPIIYAIIHPRYR 2 1 RTIRSAVPCLRFLIRISPSDLSTSSVNESSFRASMSSRHSFAARNKSSCVSSISAAET 0 0 TWSDMELEPVEAARKKQQPHRSRSFSKQAEEETGLLLKTQSCNVLTGEK 0 0 VAVSSISLHDPFERSFGENAPELLLRPSCLRTSSLPFGLNSSSTEENADTSDMEVQEQHQMEASSH 0 >MEL2_xenLae Xenopus laevis (frog) Gq 0.0.1.2.2.1.1.1.0.0 indel +SMARCAD1 +PDLIM5 +BMPR1B melanopsin Xmop 21 0 0 0 MDLGKTVEYGTHRQDAIAQIDVPDQVLYTIGSFILIIGSVGIIGNMLVLYAFYR 2 1 NKKLRTAPNYFIINLAISDFLMSATQAPVCFLSSLHREWILGDI 1 2 GCNVYAFCGALFGITSMMTLLAISINRYIVITKPLQSIQWSSKKRTSQIIVLVWMYSLMWSLAPLLGW 1 2 SSYVPEGLRISCTWDYVTSTMSNRSYTMMLCCCVFFIPLIVISHCYLFMFLAIRSTGR 2 1 NVQKLGSYGRQSFLSQSMKNEWKMAKIAFVIIIVFVLSWSPYACVTLIAWAG 2 1 HGKSLTPYSKTVPAVIAKASAIYNPIIYGIIHPKYR 2 1 ETIHKTVPCLRFLIREPKKDIFESSVRGSIYGRQSASRKKNSFISTVSTAET 0 0 VSSHIWDNTPNGHWDRKSLSQTMSNLCSPLLQDPNSSHTLEQTLTWPDDPSPKEILLPSSLKSVTYPIGLESIVKDEHTNNSCVR NHRVDKSGGLDWIINATLPRIVIIPTSESNISETKEEHDNNSEEKSKRTEEEEDFFNFHVDTSLLNLEGLNSSTDLYEVVERFLS* 0 >MEL2_danRer Danio rerio (zebrafish) Gq 0.0.1.2.2.1.1.1.0.0 indel - +FLJ39155 +PDLIM5 - 0 MEPQRQIYKRLDVPDHVHYIIAFLILIIGTLGVSGNALVMFAFYR 2 1 NKKLRSLPNYFIMNLAVSDFLMAITQSPIFFINCLYKEWMFGEL 1 2 GCKIYAFCGALFGITSMINLLAISIDRYLVITKPLQTIQWNSKRRTGLAILCIWLYSLAWSLAPLIGW 1 2 GSYIPEGLMTSCTWDYVSPSPANKSYTMMLCCFVFFIPLSIILYCYLFMFLSVRQASR 2 1 QKSSFVKQQSMRSEWKLAKIAAVVIVVYVLSWAPYACVTLVAWAG 2 1 HQDVLTPYSKTLPAVLAKSSAIYNPFIYAIIHNKYR 2 1 RTLAEKVPGLSCLSRSQKDGLSSSTNSDASAQDSSVSRQSSVSKNRLHSTMVQ* 0 >MEL2_tetNig Tetraodon nigroviridis (pufferfish) Gq 0.0.1.2.2.1.1.1.0.0 indel - - - +BMPR1B 404 aa 000 nm no_ref genome melanopsin 0 MEPKDTHITSSFFSKVDVPDHVHYIIAFFVFVIGILGITGNVLVIFAFYS 2 1 NKKLRSLPNYFIVNLAVSDLLMASTQSPIFFINLYKEWMFGET 1 2 ACKMYAFCGALFGITSMINLLAISVDRYVVITKPLQTIRRSSKRRTALAILMVWLYSLAWSLAPLVGW 1 2 GSYIPEGLMTSCTWDYVTYTLANRSYTMMLCCFVFFIPLAIILCCYLLMFLAIRKTSR 2 1 RKSTLIQQKSIRSEWKLAKIAFVVIVVYVLSWSPYACVTLISWAG 2 1 YGSTLTPYSKSVPAVIAKASAIYNPIIYAIIHPRYR 2 1 KTIRSAVPCLRFLIPISKSDLSTSSMSDSSFRSALSCRHSYRSRSTYISSISAKET 0 0 TWCDVELDPVESGHKKLQAYRSNSFSAKGVAEEESGLLLRTNNCNVPARKK 0 >MEL2_gasAcu Gasterosteus aculeatus (stickleback) Gq 0.0.1.2.2.1.1.1.0.0 indel KNTC2 +FLJ39155 +PDLIM5 +BMPR1B 353 aa 000 nm no_ref genome melanopsin 0 MEPDNAHTQRSFINKVDVPDHAHYIVAVFVVVIGTLGITGNALVMLAVYS 2 1 NKKLRNLPNYFIMNLAVSDFLMAFTQSPIFFINCLYKEWAFGET 1 2 GCKIYAFCGALFGIASMINLLAISIDRYLVITKPLQAIHWGSKRRTTLAILLVWLYSLAWSLAPLVGW 1 2 GSYIPEGLMTSCTWDYVTYTLANRSYTMMLCCFVFFIPLGIILYCYLFMFLAIRKTSR 2 1 RKSTLIKQKSMKSEWKLAKIAFVVIVVYVLSWSPYACVTLISWAG 2 1 HADILSPYSKAVPAIIAKASAIYNPFIYAIIHNKYR 2 1 MTLAAKFPCLRFLSPTPRKDTSSSISESSYRDSVISRQSTASRTHFITACPDTVN 0 >MEL2_gadMor Gadus morhua (cod) 0 MDMDRGFYRKVDVPDHAHYVIAFFVLIIGVVGVTGNALVMYAFLC 1 2 NKKLRTPPNYFIMNLAVSDFLMAITQSPIFFINSLFKEWIFGET 1 2 GCRMYAFCGALFGITSMINLLAISLDRYIVITKPPQAIRWVSGRRTMVVILLVWLYSLAWSLAPLLGW 1 2 SSYIPEGLMTSCTWDYVTSTPANKGYTLMLCCFVFFIPLGIISYCYLCMFLAIRSAGR 2 1 EIERLGTQVRKSTLMQQQTIKTEWKLTKVAFVVIIVYVHSWSPYACVTLIAWAG 2 1 YGSHLSPYSKAVPAVIAKASAIYNPFIYAIIHSKYR 2 1 DTLAEHVPCLYFLRQPPRKVSMSRAQSECSFRDSMVSRQSSASKTKFHRVSSTSTADTQVWSDVELDPMNHEGQSLRTSHSLGVLGRSKEHRGPP AQQNRQTRSSDTLEQATVADWRPPLTALRCDRNFLPQPTHPPYKMAAATPLQATTVDNVTPEHWNKHPNNNHKNHNNRHNGNNNNEEHEYSGKGGRHCQN HPHHIDVKNSISNCKKTCEKDTFSKEPVPCNAADDVRFSPRSAHTIQHAMGTPFRYMPEGDIACQERLSTDRSQRGDPLPDSKSLNCTGDVPVSAQRCSF PHETSRNLEESFMAL* 0 >MEL1_strPur Stronglyocentrotus purpuratus GLEAN3_22851 opsin4 no cdna losing introns, expressed in larval postoral arm first exons missing 1 WTKSLRTPPNMLIVNLAISDFGMVITNFPLMFASTIYNRWLFGDA 1 2 GCQFYAFCGALFGIMSIANMTAIALDR 2 1 YYVICWSLEAVRSVTHRRSMIIIIIVWCYAIFWSIPPFFGVGSYVLEGYGLGCTFDFMTKDLNHYLHV SFLFASSFVVPVTIIIVCFTRIAITVRAHRHELNKMRTKLTEDKDKKHKSSIRRANKAKTEFQIAKVGFQVTIFYVLSWM PYSIVAVIGQYFDSDLLTPLGTVVPVIFAKCSAIWNPIIYCLSHEKFNAALKEKLMGMCGIEIPSKHRSMGSQESSVTGR RGMHRQNSSTLSESSVTSTVDQDAIELKDRKQGPATVKVQQEKVEGGTYRRNPGDVTFSKDAGVEVDEKRRGDQGQRDDR VRPQGEGQMDQWSQPPPAPASASAPTPGVNDKEYLTKM* 0 >MEL2_strPur Stronglyocentrotus purpuratus cdna: S.droebachiensis DQ285097 retained intron? WLEKMKTTQILHKPVTFLRLKSSFEPRFKPRFKRRF tube feet 0 MPTTLMENSTPGWMADDSQMEETHPAFPLIGGYLLVVVLLGTAGNSLVIYTFLRFKKLHSPINLLIVNLSASDLLVATTG TPLSMVSSFYGRWLFGTNACAFYGFVNYYCGCISLNSLAAISVFRYIIVVRGQAQNNKLSLRSSIYAILVIHLYTLIFST PPLYGWNRFVLAGYHTSCDIDFHTKTPLFVSYICYMFFFLFFLPLGLISWSYFKIYQRVSKHSNSMRTSFTGVTKEINSDEKHA 2 1 NHRRTASTLFVTIVVFLFAWFPYCIVSLWVLIGDANSISKLSTTIPSLFAKSSVIYNPLIYVVLNSKFRKALIQTLSFLKCLSKHELSESS* 0
