User contributions for AngieHinrichs

19 March 2010

• 17:1317:13, 19 March 2010 diff hist +38‎ ABRF2010 Tutorial ‎ →‎Tutorial: Viewing sequencing data in the UCSC Genome Browser
• 17:1117:11, 19 March 2010 diff hist +1,001‎ ABRF2010 Tutorial ‎ →‎Viewing alignments in BAM format
• 16:5116:51, 19 March 2010 diff hist +42‎ ABRF2010 Tutorial ‎ →‎Viewing alignments in BAM format: <nowiki> for fyi-URL; bold for something they should copy-paste.
• 16:3116:31, 19 March 2010 diff hist −66‎ ABRF2010 Tutorial ‎ →‎Transforming .sgr into bedGraph for Genome Browser viewing: Make URL-to-paste bold + <nowiki>.
• 16:2716:27, 19 March 2010 diff hist +20‎ ABRF2010 Tutorial ‎ →‎Genome Graphs with .sgr data: Make URLs bold + <nowiki>

18 March 2010

• 16:5216:52, 18 March 2010 diff hist +112‎ ABRF2010 Tutorial ‎No edit summary
• 05:5805:58, 18 March 2010 diff hist +1,563‎ ABRF2010 Tutorial ‎ filling in some blanks
• 05:0405:04, 18 March 2010 diff hist +4,254‎ N ABRF2010 Tutorial ‎ skeletal first draft.

26 February 2010

• 23:1223:12, 26 February 2010 diff hist +582‎ Build Environment Variables ‎ →‎USE_BAM: Added KNETFILE_HOOKS.

25 October 2009

• 03:4403:44, 25 October 2009 diff hist +463‎ UdcFuse ‎ added some impl considerations

20 October 2009

• 22:3322:33, 20 October 2009 diff hist +21‎ m UdcFuse ‎ fixed whitespace for readdir prototype
• 22:3122:31, 20 October 2009 diff hist +1,177‎ UdcFuse ‎ Updated method descriptions.

15 October 2009

• 20:5920:59, 15 October 2009 diff hist −207‎ UdcFuse ‎ unbailing - Mark found that kernel handles seek by passing offset to read function.

13 October 2009

• 00:2200:22, 13 October 2009 diff hist +161‎ UdcFuse ‎ FUSE doesn't do seek... bailing. :(

12 October 2009

• 22:2722:27, 12 October 2009 diff hist +2,475‎ UdcFuse ‎ basics of filesystem structure, FUSE methods
• 19:1319:13, 12 October 2009 diff hist +1,692‎ N UdcFuse ‎ intro

5 October 2009

• 20:4620:46, 5 October 2009 diff hist +720‎ Make your own virtual space ‎ Most hgwdev-$USERs have no need to change the central.* settings from the default in cgi-bin/hg.conf.

4 September 2009

• 23:1523:15, 4 September 2009 diff hist +4,431‎ N Build Environment Variables ‎ Initial purpose was simply to describe USE_*, but expanded to cover other shell env vars that common.mk looks at.
• 21:2721:27, 4 September 2009 diff hist +1‎ Generic Makefile ‎ Use L +=

15 September 2008

• 20:0320:03, 15 September 2008 diff hist +890‎ Migration to hive ‎ Added "Who's responsible?" section.
• 19:5019:50, 15 September 2008 diff hist +195‎ m Migration to hive ‎ →‎GPFS vs. NFS, or how to move directories: clarifications
• 19:4019:40, 15 September 2008 diff hist +5,086‎ N Migration to hive ‎ Draft guidelines for migrating our files from old NFS servers to the new /hive.

27 August 2008

• 23:5323:53, 27 August 2008 diff hist −107‎ Presentations ‎ →‎2008: Removed Erich's presentation -- concerns about contents.
• 21:1721:17, 27 August 2008 diff hist +610‎ Presentations ‎ Added a few of my presentations from the past few years.
• 20:5720:57, 27 August 2008 diff hist +169‎ N File:Browsers CSHL Chicken 2005 05.ppt ‎ Presentation about the UCSC Genome Browser and Table Browser, at the Chicken Genome meeting at CSHL in May 2005 (just before the Biology of Genomes mtg, not part of it). current
• 20:5420:54, 27 August 2008 diff hist +91‎ N File:Automation 2006 09 12 v2.ppt ‎ Sep. 21, 2006 Genecats presentation about the scripts that ended up in hg/utils/automation. current
• 20:5120:51, 27 August 2008 diff hist +111‎ N File:Bejerano Lab 2008 03 31.ppt ‎ Crash course on making use of the kent/src tree, presented to Gill Bejerano's group at Stanford March 31, 2008. current
• 20:3920:39, 27 August 2008 diff hist +107‎ Presentations ‎ →‎2008: Added Erigh's 8/27/08 presentation.
• 20:3820:38, 27 August 2008 diff hist +47‎ N File:Swarm.ppt ‎ Erich's presentation at the 8.27.2008 genecats. current

21 April 2008

• 19:4819:48, 21 April 2008 diff hist −120‎ PCR on cDNA ‎ Updated description of seqTable and extFileTable which are now optional (seqFile can be used instead). current

11 April 2008

• 22:5622:56, 11 April 2008 diff hist −82‎ m PCR on cDNA ‎No edit summary
• 22:5422:54, 11 April 2008 diff hist +6,553‎ N PCR on cDNA ‎ After-the-fact/in-progress design doc.

9 February 2008

• 00:2200:22, 9 February 2008 diff hist +37‎ DbSNP Track Notes ‎ →‎Track tables and files: -- updated, having built the extras for human,

24 January 2008

• 05:3405:34, 24 January 2008 diff hist +3,675‎ DbSNP Track Notes ‎ Updated after putting snp128 in the pushQ; could still say a lot more.

12 December 2007

• 23:1923:19, 12 December 2007 diff hist +8‎ m Ensembl tutorial signup ‎ →‎Attending

30 November 2007

• 05:3505:35, 30 November 2007 diff hist +4,805‎ N DbSNP Track Notes ‎ First draft of notes on SNP track development.

14 November 2007

• 21:0721:07, 14 November 2007 diff hist +207‎ Whole genome alignment howto ‎ Added links to Blastz, Conservation_Track and the modEncode wiki page that AngieTest was a draft for.
• 20:5420:54, 14 November 2007 diff hist +34‎ m Chains Nets ‎ Added Category:Comparative Genomics
• 20:5320:53, 14 November 2007 diff hist +34‎ m Blastz ‎ Added Category:Comparative Genomics
• 20:5120:51, 14 November 2007 diff hist −72‎ Conservation Track ‎ Added links to Blastz and Chains_Nets; wiki-formatted. current
• 20:2820:28, 14 November 2007 diff hist +14‎ Implementation Notes ‎ Added Blastz.
• 20:2720:27, 14 November 2007 diff hist +75‎ m Blastz ‎ added Category:Technical FAQ and link to Implementation Notes.
• 20:1920:19, 14 November 2007 diff hist +391‎ Chains Nets ‎ Added references to the new Blastz page; updated some kent/src paths.
• 20:0720:07, 14 November 2007 diff hist +4,182‎ N Blastz ‎ Brief description w/references, UCSC history, and the 3 different meanings of "repeats" / "masking".

25 October 2007

• 17:4217:42, 25 October 2007 diff hist +2,640‎ N Coordinate Transforms ‎ Brief description of 1-based fully closed vs. 0-based half-open, example w/translating coords to opposite strand.

10 October 2007

• 19:1319:13, 10 October 2007 diff hist −16,639‎ AngieTest ‎ Gutted contents to avoid dangling category reference. current

10 September 2007

• 19:4619:46, 10 September 2007 diff hist +2,651‎ m AngieTest ‎ Polishing... formatting, shorthand to text.

6 September 2007

• 23:2523:25, 6 September 2007 diff hist +1,570‎ m AngieTest ‎ minor formatting tweaks / clarifications
• 23:0723:07, 6 September 2007 diff hist +13,127‎ N AngieTest ‎ first draft of GBrowse UCSC plugin howto.

30 August 2007

• 05:1505:15, 30 August 2007 diff hist +196‎ AutoSql ‎ Added details about autoSql type support from MarkD.