User contributions for David da Silva Pires
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6 April 2017
- 17:4817:48, 6 April 2017 diff hist +51 GBiB: From download to BLAT at assembly hubs →Blat configuration: Fixing the working directory and warning about the capital 'B' in "transBlat".
- 17:0617:06, 6 April 2017 diff hist +76 GBiB: From download to BLAT at assembly hubs →Blat configuration: Creating a log directory and fixing gfServer commands.
- 13:0713:07, 6 April 2017 diff hist +35 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: A better bedToBigBed command.
- 13:0513:05, 6 April 2017 diff hist +7 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Fixing the filename.
- 13:0313:03, 6 April 2017 diff hist +100 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Making a symbolic link for the eboVir3-chromSizes.txt file.
- 12:5812:58, 6 April 2017 diff hist +7 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Now eboVir3.agp file is in the output/ directory.
- 12:5712:57, 6 April 2017 diff hist +7 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: The assembly.bed file should also go to the output/ directory.
- 12:5512:55, 6 April 2017 diff hist +160 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Organizing the files in subdirectories.
- 12:4912:49, 6 April 2017 diff hist −90 GBiB: From download to BLAT at assembly hubs →Preparing the data: Simplifying the build of the chromSizes-sorted file.
- 12:4312:43, 6 April 2017 diff hist +11 GBiB: From download to BLAT at assembly hubs →Preparing the data: Simplifying the build of the .2bit file.
- 12:1112:11, 6 April 2017 diff hist −11 GBiB: From download to BLAT at assembly hubs Removing one pipe since awk can do the comparison and the printing in just one command. Simplifying the output filename.
- 11:5911:59, 6 April 2017 diff hist +395 GBiB: From download to BLAT at assembly hubs Building the AGP file only when needed: at assembly track configuration.
- 11:4111:41, 6 April 2017 diff hist 0 m GBiB: From download to BLAT at assembly hubs Changing to a better order the lines in the initial genomes.txt
21 July 2015
- 12:0212:02, 21 July 2015 diff hist +728 GBiB: From download to BLAT at assembly hubs Setting locale environment variables in order to provide a case-sensitive sort.
4 June 2015
- 01:0301:03, 4 June 2015 diff hist +115 GBiB: From download to BLAT at assembly hubs →Additional configuration: Incrementing the HTML description of a track.
- 00:4200:42, 4 June 2015 diff hist +107 GBiB: From download to BLAT at assembly hubs More additional configuration to genomes.txt.
- 00:3000:30, 4 June 2015 diff hist +60 GBiB: From download to BLAT at assembly hubs →Additional configuration: Additional configuration to genomes.txt.
- 00:2000:20, 4 June 2015 diff hist +66 GBiB: From download to BLAT at assembly hubs →Additional configuration: Additional configuration to hub.txt.
3 June 2015
- 13:4213:42, 3 June 2015 diff hist +295 GBiB: From download to BLAT at assembly hubs →Additional configuration: Adding an assembly hub through its URL.
- 11:1411:14, 3 June 2015 diff hist +3 GBiB: From download to BLAT at assembly hubs Moving "Custom track configuration" to "Additional configuration".
- 10:4610:46, 3 June 2015 diff hist +755 GBiB: From download to BLAT at assembly hubs →Additional configuration: Moving some additional configuration to Blat to the right place.
- 10:4410:44, 3 June 2015 diff hist −574 GBiB: From download to BLAT at assembly hubs →Blat configuration: Letting just the minimal configuration.
2 June 2015
- 09:3609:36, 2 June 2015 diff hist +51 GBiB: From download to BLAT at assembly hubs Constructing only the assembly track and moving additional configuration to the right place.
- 09:2509:25, 2 June 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Moving the construction of the AGP file to the subsession "Preparing the data".
- 09:2009:20, 2 June 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Simplifying the session "Track hub configuration".
- 09:1609:16, 2 June 2015 diff hist +2 GBiB: From download to BLAT at assembly hubs Simplifying the session "Preparing the data".
- 09:1209:12, 2 June 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Using only 4 cores of the laptop.
1 June 2015
- 23:3823:38, 1 June 2015 diff hist +358 GBiB: From download to BLAT at assembly hubs →Preparing the data: Changing from relative to absolute path.
- 23:3323:33, 1 June 2015 diff hist +154 GBiB: From download to BLAT at assembly hubs Adapting the session "Preparing the data" to ebola data.
- 23:2223:22, 1 June 2015 diff hist +43 m GBiB: From download to BLAT at assembly hubs New session: "Creating a basic genomes.txt file".
29 May 2015
- 22:2722:27, 29 May 2015 diff hist +43 GBiB: From download to BLAT at assembly hubs Creating a subsession for hub.txt file.
- 22:2222:22, 29 May 2015 diff hist +48 GBiB: From download to BLAT at assembly hubs →Downloading the raw data: Fixing user, host and extension.
- 22:1622:16, 29 May 2015 diff hist +34 GBiB: From download to BLAT at assembly hubs Fixing color at ssh command.
- 10:1310:13, 29 May 2015 diff hist +1 GBiB: From download to BLAT at assembly hubs Moving the subsection "Dowloading the raw data" to the section "Assembly hub configuration".
- 09:2309:23, 29 May 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Preparing earlier the .2bit file in order to obtain the assembly track.
28 May 2015
- 23:2723:27, 28 May 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Moving information about assembly track to the correct place.
- 23:2223:22, 28 May 2015 diff hist +7 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Inclusion of "EOI" at trackDb.txt.
- 23:2123:21, 28 May 2015 diff hist 0 GBiB: From download to BLAT at assembly hubs Moving down information about the construction of an HTML page.
27 May 2015
- 00:3900:39, 27 May 2015 diff hist −129 GBiB: From download to BLAT at assembly hubs →Track hub configuration: A simpler version of trackDb.txt
- 00:3500:35, 27 May 2015 diff hist −222 GBiB: From download to BLAT at assembly hubs →Preparing the raw data: Simpler versions of hub.txt and genomes.txt.
26 May 2015
- 23:3123:31, 26 May 2015 diff hist −264 GBiB: From download to BLAT at assembly hubs →Preparing the raw data: We don't need to extract a fasta file from .2bit file anymore.
- 23:1423:14, 26 May 2015 diff hist +16 GBiB: From download to BLAT at assembly hubs →GBiB maintenance: It seems that even if we do an updateBrowser, a subsequent gbibAddTools still install some updates.
- 23:1023:10, 26 May 2015 diff hist −100 GBiB: From download to BLAT at assembly hubs →GBiB configuration: Eliminating "hub" as a shared folder.
- 23:0423:04, 26 May 2015 diff hist −297 GBiB: From download to BLAT at assembly hubs Simplifying the "Download the raw data" instructions.
22 May 2015
- 18:5518:55, 22 May 2015 diff hist +37 GBiB: From download to BLAT at assembly hubs Simplifying the configuration of the first track.
- 17:0517:05, 22 May 2015 diff hist +145 GBiB: From download to BLAT at assembly hubs We don't need to download the .2bit. Downloading fasta directly.
- 16:4416:44, 22 May 2015 diff hist +11 GBiB: From download to BLAT at assembly hubs Replacing S. mansoni with Ebola virus at genomes.txt.
- 16:2816:28, 22 May 2015 diff hist +155 m GBiB: From download to BLAT at assembly hubs Checking hub state with the command hubCheck.
- 16:1516:15, 22 May 2015 diff hist −3 m GBiB: From download to BLAT at assembly hubs Typo fix.
- 16:1416:14, 22 May 2015 diff hist +15 m GBiB: From download to BLAT at assembly hubs Removing unnecessary html extension.