User contributions for Hiram

16 April 2018

• 18:0618:06, 16 April 2018 diff hist −1‎ m Open Stack Parasol Installation ‎ →‎Parasol nodes
• 18:0618:06, 16 April 2018 diff hist +1‎ m Open Stack Parasol Installation ‎ →‎Parasol nodes
• 17:5717:57, 16 April 2018 diff hist +977‎ Open Stack Parasol Installation ‎ elaborate the start up procedure
• 17:3117:31, 16 April 2018 diff hist +2,058‎ Open Stack Parasol Installation ‎ elaborate the start up procedure
• 16:5216:52, 16 April 2018 diff hist +473‎ Open Stack Parasol Installation ‎ →‎Parasol Hub
• 16:3316:33, 16 April 2018 diff hist +248‎ Open Stack Parasol Installation ‎ pointer to open stack CLI install
• 15:5915:59, 16 April 2018 diff hist +810‎ N Open Stack Parasol Installation ‎ initial contents

15 April 2018

• 16:1416:14, 15 April 2018 diff hist +230‎ N File:OpenStackParaNodeSetup.sh.template.txt ‎ Corresponding script to use with OpenStackStartParaNode.sh.txt This template script is configured by OpenStackStartParaNode.sh.txt then installed on the machine and run during start up to configure it for parasol node operations.
• 16:1316:13, 15 April 2018 diff hist +235‎ N File:OpenStackStartParaNode.sh.txt ‎ Script to use with Open Stack to start up a machine instance configured for parasol node operations Requires a corresponding script OpenStackParaNodeSetup.sh.template.txt which is sent to the machine for configuration during start up.
• 16:1216:12, 15 April 2018 diff hist +179‎ N File:OpenStackParaHubSetup.sh.txt ‎ Corresponding script to go with OpenStackStartParaHub.sh.txt This script is sent to the machine and used there during startup to configure the machine for parasol hub operations.
• 16:1016:10, 15 April 2018 diff hist +160‎ N File:OpenStackStartParaHub.sh.txt ‎ script to start up an Open Stack parasol hub machine instance Also requires the OpenStackParaHubSetup.sh.txt script which configures the machine upon start up.

12 April 2018

• 19:3319:33, 12 April 2018 diff hist 0‎ File:Hg38.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb
• 02:1302:13, 12 April 2018 diff hist 0‎ File:NodeReport.sh.txt ‎ Hiram uploaded a new version of File:NodeReport.sh.txt

9 April 2018

• 17:1717:17, 9 April 2018 diff hist +188‎ Parasol job control system ‎ No parasol jobs in parasol jobs
• 17:1517:15, 9 April 2018 diff hist +321‎ Whole genome alignment howto ‎ adding note to reference the doChainNetBlastz.pl script

8 April 2018

• 02:2602:26, 8 April 2018 diff hist 0‎ 112 fly pair wise alignments ‎ reorg % location current
• 02:1002:10, 8 April 2018 diff hist +17,405‎ 112 fly pair wise alignments ‎ genome and taxId links

7 April 2018

• 23:5923:59, 7 April 2018 diff hist +6,272‎ 112 fly pair wise alignments ‎ with accession link
• 23:5523:55, 7 April 2018 diff hist +13,848‎ N 112 fly pair wise alignments ‎ initial contents needs out links

6 April 2018

• 21:1321:13, 6 April 2018 diff hist +1,632‎ DoBlastzChainNet.pl ‎ adding how it works
• 20:5920:59, 6 April 2018 diff hist +1,961‎ DoBlastzChainNet.pl ‎ adding four categories of DEF files
• 20:2420:24, 6 April 2018 diff hist +53‎ m DoBlastzChainNet.pl ‎ use rsync instead of ftp
• 20:2020:20, 6 April 2018 diff hist 0‎ m DoBlastzChainNet.pl ‎ →‎Install scripts and kent command line utilities
• 20:1320:13, 6 April 2018 diff hist +136‎ Parasol job control system ‎ add bedSingleCover.pl to binaries
• 20:1220:12, 6 April 2018 diff hist +343‎ DoBlastzChainNet.pl ‎ indicate lastz binary is in UCSC downloads, add bedSingleCover.pl
• 20:0820:08, 6 April 2018 diff hist −2‎ DoBlastzChainNet.pl ‎ lastz-1.04.00 binary is now in UCSC downloads
• 16:3316:33, 6 April 2018 diff hist 0‎ File:Mm9.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
• 16:3316:33, 6 April 2018 diff hist 0‎ File:Mm10.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
• 06:0406:04, 6 April 2018 diff hist −123‎ m DoBlastzChainNet.pl ‎ →‎PATH setup
• 06:0206:02, 6 April 2018 diff hist +1,487‎ DoBlastzChainNet.pl ‎ note track hub files
• 05:3605:36, 6 April 2018 diff hist +45‎ m DoBlastzChainNet.pl ‎ →‎Install scripts and kent command line utilities
• 05:3405:34, 6 April 2018 diff hist +30‎ m DoBlastzChainNet.pl ‎ →‎Obtain genome sequences
• 05:3205:32, 6 April 2018 diff hist +123‎ m DoBlastzChainNet.pl ‎ →‎Prerequisites
• 05:3105:31, 6 April 2018 diff hist −4‎ m DoBlastzChainNet.pl ‎ →‎PATH setup
• 05:3005:30, 6 April 2018 diff hist +3,276‎ DoBlastzChainNet.pl ‎ Reciprocal Best
• 05:1005:10, 6 April 2018 diff hist 0‎ m DoBlastzChainNet.pl ‎ →‎perform alignment
• 05:0705:07, 6 April 2018 diff hist +3,119‎ DoBlastzChainNet.pl ‎ monitor progress
• 04:1004:10, 6 April 2018 diff hist +965‎ DoBlastzChainNet.pl ‎ run alignment
• 04:0404:04, 6 April 2018 diff hist +1,033‎ DoBlastzChainNet.pl ‎ lastz DEF file
• 03:5403:54, 6 April 2018 diff hist +2,390‎ DoBlastzChainNet.pl ‎ →‎Obtain genome sequences
• 03:0603:06, 6 April 2018 diff hist +403‎ DoBlastzChainNet.pl ‎ adding genome sequences
• 02:5302:53, 6 April 2018 diff hist 0‎ File:ParasolInstall.sh.txt ‎ Hiram uploaded a new version of File:ParasolInstall.sh.txt current
• 02:5102:51, 6 April 2018 diff hist +29‎ Parasol job control system ‎ →‎PATH setup
• 02:5002:50, 6 April 2018 diff hist +639‎ DoBlastzChainNet.pl ‎ adding working directory
• 02:4102:41, 6 April 2018 diff hist +659‎ DoBlastzChainNet.pl ‎ →‎PATH setup
• 02:3602:36, 6 April 2018 diff hist +38‎ m DoBlastzChainNet.pl ‎ →‎Install scripts and kent command line utilities
• 00:5100:51, 6 April 2018 diff hist +4‎ DoBlastzChainNet.pl ‎ →‎Install scripts and kent command line utilities
• 00:5100:51, 6 April 2018 diff hist +119‎ DoBlastzChainNet.pl ‎ →‎Install scripts and kent command line utilities
• 00:4900:49, 6 April 2018 diff hist +53‎ DoBlastzChainNet.pl ‎ adding category tags
• 00:4700:47, 6 April 2018 diff hist +14‎ Parasol job control system ‎ →‎PATH setup