User contributions for Hiram
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15 June 2018
- 23:0023:00, 15 June 2018 diff hist +3,643 N MicMur3 3-way Genome size statistics initial contents current
- 23:0023:00, 15 June 2018 diff hist +2,324 N MicMur3 3-way conservation alignment initial contents current
- 16:5216:52, 15 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 15 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
12 June 2018
- 17:4217:42, 12 June 2018 diff hist +53 Lastz DEF file parameters add category tags current
- 17:4117:41, 12 June 2018 diff hist +2,304 N Lastz DEF file parameters Created page with "Adjusting SEQ_LAP, SEQ_CHUNK and SEQ_LIMIT parameters for the lastz/chain/net pipeline. The goal of adjusting these parameters is to obtain a reasonable number of cluster job..."
- 17:2317:23, 12 June 2018 diff hist +47 DoBlastzChainNet.pl outlink to discussion of DEF file parameter adjustment
8 June 2018
- 16:5216:52, 8 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 8 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
7 June 2018
- 16:5216:52, 7 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 7 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
6 June 2018
- 16:5216:52, 6 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 6 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
5 June 2018
- 16:5216:52, 5 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 5 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
2 June 2018
- 16:5216:52, 2 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 2 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
1 June 2018
- 16:5216:52, 1 June 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 1 June 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
31 May 2018
- 16:5216:52, 31 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5216:52, 31 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
25 May 2018
- 16:5316:53, 25 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5316:53, 25 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
- 13:4413:44, 25 May 2018 diff hist +118 Nm User:Mingfu Wu Creating user page for new user. current
18 May 2018
- 16:5316:53, 18 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:5316:53, 18 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
11 May 2018
- 16:5316:53, 11 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
4 May 2018
- 16:3316:33, 4 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:3316:33, 4 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
3 May 2018
- 16:3316:33, 3 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:3316:33, 3 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
2 May 2018
- 16:3316:33, 2 May 2018 diff hist 0 File:Mm9.grcIncidentDb.bb Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
- 16:3316:33, 2 May 2018 diff hist 0 File:Mm10.grcIncidentDb.bb Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
28 April 2018
- 17:5017:50, 28 April 2018 diff hist +53 File:SizeVsTime.png adding category tags current
- 17:4917:49, 28 April 2018 diff hist +53 File:LastzProcessingTimeHistogram.png adding category tags current
- 17:3017:30, 28 April 2018 diff hist +1 m Cluster Jobs →Sick batch
- 17:2617:26, 28 April 2018 diff hist +103 Parasol job control system add pointer to cluster jobs guidelines
- 17:1617:16, 28 April 2018 diff hist +110 DoBlastzChainNet.pl →Parasol Job Control System
- 17:1017:10, 28 April 2018 diff hist +69 DoBlastzChainNet.pl →Compute resources
- 17:0917:09, 28 April 2018 diff hist +303 N File:LastzProcessingTimeHistogram.png lastz cluster compute time histogram 1,635 measurements from alignments performed at UCSC 459 measurements are less than 0.05 days (less than 1 hour) due to very small genome sizes 59 measurements are longer than 5 days processing time due to high c...
- 17:0517:05, 28 April 2018 diff hist +129 File:SizeVsTime.png No edit summary
- 17:0417:04, 28 April 2018 diff hist +537 DoBlastzChainNet.pl add compute resources
27 April 2018
- 23:1323:13, 27 April 2018 diff hist +213 N File:SizeVsTime.png lastz cluster run processing time vs. genome size blue points plot times 2 days or less processing time, left axis scale 0 - 2 days red points plot times over 2 days processing time, right axis scale 0 - 70 days
26 April 2018
- 15:2915:29, 26 April 2018 diff hist +374 LiftOver Howto added note about the scripts now available current
- 15:2015:20, 26 April 2018 diff hist 0 Whole genome alignment howto →2018 UPDATE NOTE
- 15:2015:20, 26 April 2018 diff hist 0 Whole genome alignment howto corrected doBlastzChainNet.pl
- 15:1815:18, 26 April 2018 diff hist 0 Minimal Steps For LiftOver corrected doBlastzChainNet.pl current
- 15:1715:17, 26 April 2018 diff hist +33 N DoChainNetBlastz.pl Hiram moved page DoChainNetBlastz.pl to DoBlastzChainNet.pl: previous title was incorrect current
- 15:1715:17, 26 April 2018 diff hist 0 m DoBlastzChainNet.pl Hiram moved page DoChainNetBlastz.pl to DoBlastzChainNet.pl: previous title was incorrect
- 15:1415:14, 26 April 2018 diff hist −1 DoBlastzChainNet.pl corrected command