Cryptochrome evolution
From genomewiki
Revision as of 12:03, 28 February 2012 by Tomemerald (talk | contribs) (Created page with "== Introduction to Cryptochromes == (to be continued shortly) === Vertebrate CRY1 reference sequences === >CRY1_homSap Homo sapiens (human) 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTI...")
Introduction to Cryptochromes
(to be continued shortly)
Vertebrate CRY1 reference sequences
>CRY1_homSap Homo sapiens (human) 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSAENIPGCSSSG 1 2 SCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_panTro Pan troglodytes (chimpanzee) XM_509339 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSAENIPGCSSSG 1 2 SCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSVGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_ponAbe Pongo abelii (Sumatran orangutan) XM_002823690 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDASLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSAENVPGCSSSG 1 2 SCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSMGTGLSGGKRASQEEDTQSIGPKVQRQSTN* 0 >CRY1_nomLeu Nomascus leucogenys (gibbon) XM_003269977 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSAENIPGCSSSG 1 2 SCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_macMul Macaca mulatta (rhesus) NM_001194159 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSTENIPGCSSSGS 1 2 CSQGSGILHYTHGDSQQTHLLKQ 1 2 GRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_calJac Callithrix jacchus (marmoset) XM_002752946 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSAENIPGCTSSG 1 2 SCSQGSGILHCAHGDSQQTHLLKQ 1 2 GRSSMSTGISGGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_saiBol Saimiri boliviensis (squirrel monkey) nearly identical to marmoset 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSAENIPGCTSSG 1 2 SCSQGSGILHCAHGDSQQTHLLKQ 1 2 GRSSMSTGLGGGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_tarSyr Tarsius syrichta (tarsier) ABRT010205577 unsure if exon 2 is CRY1 or CRY2 0 2 1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 0 0 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMGYSPAENTPGCSSSG 1 2 SCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSVGTGLSGGKRPSQEEDPQSIGPKVQRQSTN* 0 >CRY1_micMur Microcebus murinus (mouse lemur) 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 IIELNGGQPPLTYKRFQTLISK SEVIEKCTTPLSDD 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKSSPPLSLYGRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGFMEYSPAENIPGCSSSG 1 2 NCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSMGTGFSGGKRPSQEEDTQSIGSKVQRQSTN* 0 >CRY1_otoGar Otolemur garnettii (bushbaby) AAQR03016495 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITRLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 0 0 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEIIEKCTTPLFDDHDEKYGVPSLEEL 1 2 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPASFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGSFMEYSPPENIPGCSSSG 1 2 NCSQGSGILHYAPGDGQQPHLLKQ 1 2 GRSSMGTGLSGGKRPSQEEDMQSVGPKVQRQSTN* 0 >CRY1_tupBel Tupaia belangeri (treeshrew) 0 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 0 0 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKFGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRVNSNSLLASPTGL 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLSSSGSCSQGSGILHYAHGDSQQTHLLKQGRSSMGP 1 2 1 2 GCSQGSGILHYAHGDSQQTHLLKQ 1 2 GLSSGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_musMus Mus musculus (mouse) NM_007771 all transcripts support longer exon 10 lost splice donor 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLER 0 0 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNSNGNGGLMGYAPGENVPSCSSSGNGGLMGYAPGENVPSCSGG 1 2 NCSQGSGILHYAHGDSQQTHSLKQ 1 2 GRSSAGTGLSSGKRPSQEEDAQSVGPKVQRQSSN* 0 >CRY1_ratNor Rattus norvegicus (rat) NM_198750 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYAPGENVPSGGSGGG 1 2 NCSQGSGILHYAHGDSQQTNPLKQ 1 2 GRSSMGTGLSSGKRPSQEEDAQSVGPKVQRQSSN* 0 >CRY1_criGri Cricetulus griseus (hamster) XM_003505292 0 MGVNAVHWFRKglrlhDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLVSKMEPLEMPAETITSDVIGKCMTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLER 0 0 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYTTGENLPSCSGGG 1 2 SCSQGSGILHYAHGDSQQAHLLKQ 1 2 GRSSMGTSLSSGKRPSQEEETRSVDPKVQRQSSN* 0 >CRY1_spaJud Spalax judaei (blind mole rat) AJ606298 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRW 2 1 RFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERR 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYTPGENIPNCSSSG 1 2 SCSQGSGILHYAHGDSQQAHLLKQ 1 2 GSSSMGHGLSNGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_dipOrd Dipodomys ordii (kangaroo rat) ABRO01202522 ABRO01202521 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRW 2 1 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCSVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYAAGDNLPGSSSSG 1 2 SCSQGSGILHYAHGDSQQMHLLKQ 1 2 GRSSMGTGLSSGKRPSQEEDSQSIGPKVQRQSTN* 0 >CRY1_speTri Spermophilus tridecemlineatus (squirrel) Ictidomys 0 2 1 0 RDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHEASLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMAyAPGENIPGCSSSG 1 2 SCTQGSSILHNAHGDSQQTHLLKQ 1 2 GRSSMGTGLSSGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_oryCun Oryctolagus cuniculus (rabbit) 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRW 2 1 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITRLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSDVIEKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSSG 1 2 SCSQGSGILHYAQGDTQQTQLLKQ 1 2 GRSSMGTGLSSGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_ochPri Ochotona princeps (pika) 0 2 1 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 1 2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 2 1 1 2 1 2 GCPQGSGILHCGHGDSQQTHLLKQ 1 2 GRGSPDTGISSGKRPSQEEDTQSIGPKVQRQSTN* 0 >CRY1_oviAri Ovis aries (sheep) NM_001129735 19341811 19150926 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIIRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVMEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRG 1 2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSSA 1 2 SCTQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSTAAGLGSGKRPSQEEDTQSVGPKVQRQSTN* 0 >CRY1_bosTau Bos taurus (cattle) NM_001105415 XM_616063 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSNA 1 2 SCTQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSTGAGLGSGKRPSQEEDTQSIGPKVQRQSTN* 0 + >CRY1_susScr Sus scrofa (pig) XM_003126079 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSSG 1 2 SCPQGSGILHYAHGESQQNHLLKQ 1 2 GRSSTGSGLSSAKRPSQEEDTQSIIGPKVQRQSTN* 0 >CRY1_ailMel Ailuropoda melanoleuca (panda) XM_002927658 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPANPNGNGGLMGYSPGENIPGCSSSG 1 2 SCSQGSGILHYAHGDSQQTHLLKQ 1 2 GRSSMGSGLSSGKRPSEEEDTQSIGPKVQRQSTN* 0 >CRY1_loxAfr Loxodonta africana (elephant) XM_003405313 0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWDITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIGKCTTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYSPGENTPGCNSSG 1 2 SCSQGSGILHYVHGDSLLKQ 1 2 GRSPTGTGVSSGKRPSQDEETQTLGPKVQRQSTN* 0 >CRY1_monDom Monodelphis domestica (opossum) XM_003341966 0 MGVNAGHWFRKRLRLPHNPALKGCIQGADTVCCVYIRDPWFGGSSNFGANEWK 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 0 0 IIELNGGQPPLTYKRFQTLISKMEPLATPVETITPEVMHKCVTPLSDEHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGSLMAYTPGENIPGCSSGG 1 2 GYSQGSGISHYSHEDSQQAYMLKQ 1 2 GRSSLGVGGGKRPRQEEETQSINPKVQRQSTN* 0 >CRY1_macEug Macropus eugenii (wallaby) assembly frameshift 0 MGVNAVHWFRKGLRLHDNPALKECIEGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPLGRNAMQLLKNWASEAGVEVIVRISHTLYDLDK 2 1 1 2 gFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGSLMGYTTGENIPTCSSSGG 1 2 GYSQGSGISHYSHEDSQQAYVLKQ 1 2 GRNSLGGGKRHRQEEETQSIGSKMQRQSVN* 0 >CRY1_sarHar Sarcophilus harrisii (tasmanian devil) nearly identical to oppossum 0 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 0 0 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGGLMGYTSGENGPACNSGG 1 2 GYSQGSGISHYSHEDSQQAYILKQ 1 2 GRSSLSGGKRPRQEEETQSVGPKVQRQSVN* 0 >CRY1_ornAna Ornithorhynchus anatinus (platypus) XM_001508563 = rubbish, genomic frameshift, continuing exon 12 0 MGVNAVHWFRKGLRLHDNPALRDCVRGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYELDK 2 1 IIELNGGQPPLTYKRFQTLISRMDPLAMPVETITAEVMGKCMTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNANGSGGLMAYSPGENIPGCSSGGG 1 2 GVQMGASESH LLQTCVLGESHLGPSGIQQQ 1 2 GYCQGSGVLYYANGESHLTQ 1 2 GRSSLTPGLSGGKRPCQEEESQSIGPKVQRQSTD* 0 >CRY1_tacAcu Tachyglossus aculeatus (echidna) SRR000649.130490 short read transcripts corrected for frameshifts, skipped penultimate exon 0 2 1 0 0 2 1 ETITAEVMGKCVTPLSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGEAEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLTPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAImtqlrqeGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNANGSGGLMAYSPGENIPGCSSGG 1 2 GAQIGASESHLLQTCVLGESHLGPSGIQQQ 1 2 1 2 GRSSLTPGLSGGKRHCQEEESQSIGPKVQRQSTD* 0 >CRY1_allMis Alligator mississippiensis (alligator) scaffold-103537 0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMEKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGVQKAAKCMIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNPNGNGNGGLMGYSPGENVSGCSRA 1 2 GAQMGSSDGHTVSVQPCALGESHGGSNGIQQQ 1 2 GYFQASSILHFPHGDDQQSHLLQQ 1 2 GRTSLSSGISAGKRPNPEEETQSIGPKVQRQSTN* 0 >CRY1_galGal Gallus gallus (chicken) 11684328 17324421 15459395 0 MGVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERH 0 0 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNPNGNGNGGLMSFSPGESISGCSSAG 1 2 GAQLGTGDGQTVGVQTCALADSHTGGSGVQQQ 1 2 GYCQASSILRYAHGDNQQSHLMQP 1 2 GRASLGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0 >CRY1_melGal Meleagris gallopavo (turkey) XM_003202363 0 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERH 0 0 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNPNGNGNGGLMSFSPGESISGCSSAG 1 2 GAQLGTGDGQTVGVQSCALGDSHTGGNGVQQQ 1 2 GYCQASSILRYAHGDNQQPHLMQP 1 2 GRASLGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0 >CRY1_eriRub Erithacus rubecula (robin) AY585716 0 MGVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 ASVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1 2 GAQLGTGDGHTVVQSCTLGDSHSGTSGIQQQ 1 2 GYCQASSILHYAHGDNQQSHLLQA 1 2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0 >CRY1_sylBor Sylvia borin (warbler) AJ632120 15381765 0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEE 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1 2 GAQLGAGDGHSVVQSCALGDSHTGTSGVQQQ 1 3 GYCQASSILHYAHGDNQQSHLLQA 1 2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0 >CRY1_taeGut Taeniopygia guttata (finch) XM_002196518 0 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 0 0 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 GMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1 2 GAQLGTGDGHSVVQSCALGDSHTGTSGIQQQ 1 2 GYCQASSILHYAHGDNQQSHLLQA 1 2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0 >CRY1_melUnd Melopsittacus undulatus (budgerigar) AGAI01062111 1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL GLLATVPSNPNGNGNGGLMGYSPGESISGCSSAGG GAQLGTGDGHTVVQPCALGDSHTAGASGIQQQ GYCQASSILHYAHGDNQQSHLLQAG VGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0 >CRY1_anoCar Anolis carolinensis (lizard) XM_003220923 0 MGVNAVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYELDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVMSKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQMYQQLSRYRGL 1 2 GLLASVPSNGNGNGNGGLMGYSTGENIPGCTNTN 1 2 GSQMGMNEGHIGNVQACTMGESHTGTSGIQQQ 1 2 GYSQGSGILLYSHGDNQKTHSAQKGRISLGT 1 2 GVCTGKRPSPEVETQSVGPKVQRQSSN* 0 >CRY1_podSic Podarcis siculus (wall lizard) DQ376040 16809482 0 MGVNAVHWVRQGLRLPDNRALREVIQGADTARCVYILDPSFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMSKCTTPVSDDHDEKCGVPSLEEL 1 2 GFDTGGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKPMVNHTEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPLMEWNVIVLMGYHQGTLLVYHAS 1 2 GSQMGTNEAHTGSVQTCTLGESHTGTSGIQQQ 1 2 GYPQGSDILHYAHGEGQKTHLIQQGRASLVA 1 2 GVCTGKRPNPEEETQSIGPKVQRQSSK* 0 >CRY1_pytMol Python molurus (python) AEQU010547455 0 MGVNSVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFk 0 0 EWNISKLSIEYDSEPFGKERDAAIKKLATEAGLEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMSKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLER 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 2 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPILRGFPAKYIYDPWNAPEGVQKAAKCIIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 2 1 2 GAQMGTSEGHTGNVQACTLGETHTGTSGIQQQ 1 2 GYSQGNSGILHYAHGDSQKTLLMQ 1 2 GRTSLSVGVCTGKRPNPEEGIQSIGPKVQRQSSN* 0 >CRY1_chrPic Chrysemys picta (turtle) AHGY01469963 AHGY01469969 0 MGVNAVHWFRKGLRLHDNPALRECIQGADSVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMEKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNRSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIR 2 1 RYLPILRGFPAKYIYDPWNAPESIQKAAKCVIGVHYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLATVPSNP NGNGGLMGYSPGENISGCSSAS 1 2 GAQMGSNDGHTVGVQTCSLEDSHAGSSGIQQH 1 2 GYSQGNSIVHYAQGDHQQSHLLQQG 1 2 GRTVSTGISTGKRPNPEKETQSIGPKVQRQSTN* 0 >CRY1_xenTro Xenopus tropicalis (frog) NM_001087660 11533577 final four exons confirmed by many ESTs 0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWKITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2 1 IIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVMEKCTTPVSDDHDEKYGVPSLEEL 1 2 GFDTEGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGKRTDPNGDYIR 2 1 RYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1 2 GLLASVPSNPNGNGNGGLMSYSPGESMSGCSNNG 1 2 GGQMGVNEGSSASNPNANKGEVHPGTSGLQ 1 2 GYWQGSSILHYSHSDSQQSYLMQ 1 2 ARNPLHSVVSSGKRPNPEEETQSIGPKVQRQSSH* 0 >CRY1_latCha Latimeria chalumnae (coelocanth) 0 MGVNAIHWFRKGLRLHDNPALREAIQGGDCIRCVYILDPWFAGSSNVGINRWR 2 1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0 0 EWNISRLSFEYDSEPFGKERDAAIKKLASEAGVEVIVRITHTLYDLDR 2 1 IIELNGGQPPLTYKRFQTLISRMEPLDLPVETINSEVMGNCSTPVSDDHDEKYGVPSLEEL 1 2 GFDTEGLPSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPEGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGM 1 2 GLLASVPSNPNGNGGLGCSLAENIPVCNSAA 1 2 GAQMGGDDGHKVSVLAYTQGDSRAGEIEMQQQ gcyi* 1 2 1 2 * 0 >CRY1_danRer Danio rerio (zebrafish) NM_001077297 0 MVVNTVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGISRWR 2 1 FLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFK 0 EWNINRLSYEYDSEPFGKERDAAIKKLANEAGVEVIVRISHTLYDLDK 2 0 IIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVPSLEEL 1 2 GFDTEGLSSAVWPGGETEALTRLERHLERK 0 0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRK 0 0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0 0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIR 2 1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEASRLNIERMKQIYQQLSCYRGL 1 2 GLLAMVPSNPNGNGENSTSLMGFQTGDMTKEVTTPS 1 2 GYQMPPTSQGEWHGRTMVYSQGDQQTSSIMTSQ 1 2 GFGNNGSTMCYRQDAQQIT 1 2 GRGLHSSIIQTSGKRHSEESGPTTVSKVQRQCSS* 0
Vertebrate CRY2 reference sequences
(more coming shortly)
>CRY2_hetGla Heterocephalus glaber (mole-rat) EHA99865 MAAAVGTGTGAAPTPATGAEGACSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRW RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR IIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMKSCRAEIQENHDDTYGVPSLEEL GFPTEGLGPAVWQGGETEALARLDKHLERK AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL CLLASVPSCVEDLSHPVAEPTLSQAGSSSSTG PRSLPDGPASPKRKLEAAEEPPGEEL SKRARVAELPAPEPTSKDA*
Insect photolyases and cryptochromes
>CRY1_droMel Drosophila melanogaster (fruit fly) cryptochrome 3TVS CG3772 mATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRL LVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMF LHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTM SVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGL QHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQE QYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADvvv >CRY64_droMel Drosophila melanogaster (fruit fly) 6-4 photolyase 3CVW CG2488-RA (phr6-4) length=540 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDA AVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIW VARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQE GWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRI VKHEVVHKENIKRMGAAYKVNREVRTGKEEESSFEEKSETSTSGKRKVRRATGSAPKRKR >CPD_droMel Drosophila melanogaster (fruit fly) thymidine dimer photolyase MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGCANNNKSAKDKVAGEKQEHQHQQQTQLIESPYRYTVMFTLASYWRESFKIV LPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQESSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRVRVLSKTEDVKESSLG GVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAP LRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRHPHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWA KPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWA YQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDM GWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGKVHKKK