Other genome browsers

UCSC Genome mirror sites

The below mirrors are not populated nor maintained by UCSC. Any questions regarding them should be directed towards their host institution/organization.

• Medical College of Wisconsin Milwaukee, WI

• Duke University Durham, NC

• Cornell University Ithaca, NY

• Aarhus University The Department of Molecular Medicine (MOMA) at Aarhus University, Denmark

Non-UCSC (genome.ucsc.edu) Browsers

The below list of genome browsers is provided as a service to the genomics community. These browsers are not affiliated with the UCSC Genome Browser and any questions regarding them should be directed to their hosts.

Animal Browsers

• 1000 Genomes A Deep Catalog of Human Genetic Variation

• NONCODE genome browser. UCSC browser with special tracks for non-coding annotations.

• Jim Watson genome browser at CSHL

• Craig Venter genome data release

• dbRIP - Retroposon Insertions Roswell Park Cancer Institute, MD

• Vista Lawrence Berkeley Lab, CA

• GARFIELD cat genome browser, Federick, MD

• Panda genome resources

• C. intestinalis: UCSC-based, Gbrowse

• The JGI-browser for various species: Fugu, C.intestinalis, waterflea, sponge, amphioxus, snail, hydra, etc...

• Bio2Rdf Semantic web atlas of postgenomic knowledge about human and mouse

• Epigenomics Epigenomics Roadmap mirror at Washington University, St. Louis.

• Eyebrowse specializing in eye tissue sequences

• Aedes aegypti

• Silkworm Bombyx mori, China

• UNLV Las Vegas Genome Browser hosting: D. melanogaster and some plants

• NRSP-8 National Animal Genome Research Program - Bioinformatics Coordination Program

Plant Browsers

• EnsemblPlants incl. Arabidopsis, rice, corn, tomato, soybean, Physcomitrella

• Arabidopsis genome browser at UCLA

• Arabidopsis genome browser at Dartmouth.

• Arabidopsis arabidopsis.info Ensembl-based genome browser

• UNLV Las Vegas Genome Browser hosting: Arabidopsis, rice, sorghum and soybean, as well as D. melanogaster

• gramene.org many rice genomes and other grasses

• Rice Genome Annotation Project hosts Oryza sativa browser

• Rice-Map

• RICE FPC Genome Browser from the Arizona Genomics Institute (AGI)

• Zea mays Maize Genome Sequencing Project

• Cannabis sativa Cannabis browser at U Toronto

Fungi/Yeast Browsers

• Saccharomyces cerevisiae database and genome browser from SGD/Stanford University

• S. pombe (fission yeast) at NCI, NIH

Other

• Archaea browser from the Lowe Lab at UCSC

• EnsemblBacteria

• EnsemblProtists

• Paramecium tetraurelia Genoscope, France

• JPGV Jena Prokaryotic Genome Browser

See Also

Related Wikis