Hg19 Andy's alignment notes
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- everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
| Species | Database | Started | SEQ1_CHUNK | SEQ2_CHUNK | SEQ2_LIMIT | Status |
|---|---|---|---|---|---|---|
| Squirrel | speTri1 | 2009-05-14 | 10M | 10M | 100 | done (2009-05-30) |
| Cat | felCat3 | 2009-05-14 | 10M | 10M | 300 | running recip best (2009-05-30) |
| Guinea Pig | cavPor3 | 2009-05-14 | 10M | 10M | 100 | done (2009-05-30) |
| Cow | bosTau4 | 2009-05-21 | 10M | 10M | 300 | done (2009-05-30) |
| Megabat | pteVam1 | 2009-05-21 | 10M | 10M | 200 | needs recip best (2009-05-28) |
| Horse | equCab2 | 2009-05-21 | 10M | 10M | 300 | needs syntenic nets (2009-05-28) |
| Alpaca | vicPac1 | 2009-05-21 | 20M | 10M | 300 | needs recip best (2009-05-30) |
| Microbat | myoLuc1 | 2009-05-21 | 20M | 10M | 300 | needs recip best (2009-05-30) |
| Dolphin | turTru1 | 2009-05-21 | 10M | 10M | 200 | needs recip best (2009-05-30) |
| Sloth | choHof1 | 2009-05-21 | 20M | 10M | 300 | needs recip best (2009-05-28) |
| Wallaby | macEug1 | 2009-05-21 | 20M | 20M | 200 | needs recip best (2009-05-30) |
