Source tree compilation on Debian/Ubuntu
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I did this on my Debian Lenny am64 machine to compile the UCSC source tree:
su aptitude install mysql-server-5.0 apache2 libmysqlclient15-dev # libmysqlclient.a does not contain SSL symbols, so use shared library export MYSQLLIBS="-lmysqlclient -lz" export MACHTYPE=$(uname -m) export MYSQLINC=/usr/include/mysql DIRS='SCRIPTS=/usr/local/bin CGI_BIN=/usr/lib/cgi-bin DOCUMENTROOT=/var/www/genome BINDIR=/usr/local/bin ENCODE_PIPELINE_BIN=/usr/local/bin' # download cd /usr/local wget http://hgdownload.cse.ucsc.edu/admin/jksrc.zip unzip jksrc.zip mkdir -p /var/www/genome/ # compile libraries cd kent/src/libs make compile $DIRS # compile browser cd ../hg make $DIRS