AnoCar2 Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external links from the UCSC database name go to the sequencing center information pages for this genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
  • % masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
  • % of anoCar2 matched (chainLink table) == featureBits anoCar2 chain<Db>Link == alignment coverage

do not edit, automatically generated table

order
count
ucsc
db name
chrom
count
total
size
non-N
bases
N base
count
% masked common name coverage N50
chrom.sizes
alignment type % of anoCar2
matched
(chainLink table)
chain
minScore
chain
linearGap
01anoCar2 6,457 1,799,143,5871,701,353,767 97,789,820% 41.98 Lizard7.1X 150641573 N/AN/A   N/A
02galGal3 57 1,100,480,4411,042,583,135 57,897,306% 9.85 Chicken6.6X 94230402 Net6.822% 5000 loose
03ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 Net4.561% 5000 loose
04hg19 93 3,137,161,2642,897,310,462 239,850,802% 50.63 Human20X 146364022 Net5.190% 5000 loose
05mm9 35 2,725,765,4812,620,345,972 105,419,509% 44.09 Mouse20X 131738871 Net4.981% 5000 loose
06xenTro2 19,759 1,513,925,4921,359,400,017 154,525,475% 19.65 X. tropicalis7.65X 1564123 Net5.053% 5000 loose
07gasAcu1 23 463,354,448446,627,861 16,726,587% 2.58 Stickleback6X 20083130 Net3.143% 5000 loose