AnoCar2 conservation alignment: Difference between revisions

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<UL>
<UL>
<LI>[[UCSC Multiple Alignments]] on other organisms</LI>
<LI>Lizard 7-way [[AnoCar2 Genome size statistics]]</LI>
<LI>Lizard 7-way [[AnoCar2 conservation lastz parameters]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>
</UL>



Latest revision as of 22:40, 18 May 2011

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on anoCar2
% of anoCar2
matched
(chainLink table)
01anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13N/AN/A
02galGal3Gallus
gallus
Chicken May 2006 (WUGSC 2.1/galGal3) Chicken Genome Sequencing Consortium May 2006 release 2009-08-15 2007-01-022011-04-266.822%
03ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 N/A2011-04-274.561%
04hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A2011-04-195.190%
05mm9Mus
musculus
Mouse July 2007 (NCBI37/mm9) NCBI Build 37 2009-08-14 N/A2011-04-264.981%
06xenTro2Xenopus
tropicalis
X. tropicalis Aug. 2005 (JGI 4.1/xenTro2) JGI v4.1 2009-08-16 2009-09-022011-04-255.053%
07gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-152011-04-263.143%