CalJac3 conservation alignment: Difference between revisions

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<UL>
<UL>
<LI>13-way [[Marmoset_calJac3_13-way_size_statistics|CalJac3 Genome size statistics]]</LI>
<LI>Marmoset 13-way [[Marmoset_calJac3_13-way_size_statistics|CalJac3 Genome size statistics]]</LI>
<LI>13-way [[CalJac3 conservation lastz parameters]]</LI>
<LI>Marmoset 13-way [[CalJac3 conservation lastz parameters]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>
</UL>

Latest revision as of 20:21, 19 May 2011

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on calJac3
% of calJac3
matched
(chainLink table)
01calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 N/AN/AN/A
02ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 N/A2010-02-1271.893%
03hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A2010-02-1173.768%
04panTro2Pan
troglodytes
Chimp Mar. 2006 (CGSC 2.1/panTro2) Washington University Build 2 Version 1 2009-08-15 N/A2010-02-1172.304%
05gorGor2Gorilla
gorilla
gorilla
Gorilla Aug. 2009 (Sanger 4/gorGor2) Sanger Institute Aug 2009 (NCBI project 31265) 2009-11-03 N/A2010-02-2376.343%
06rheMac2Macaca
mulatta
Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2009-08-15 N/A2010-02-1269.625%
07papHam1Papio
hamadryas
Baboon Nov. 2008 (Baylor 1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 N/A2010-02-1870.053%
08tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 (Broad/tarSyr1) Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2009-09-02 N/A2010-02-2446.729%
09micMur1Microcebus
murinus
Mouse lemur Jun. 2003 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 N/A2010-02-2145.726%
10otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 (Broad/otoGar1) Broad version 1 (NCBI project 16955, AAQR00000000) 2009-09-02 N/A2010-02-2142.743%
11canFam2Canis
lupus
familiaris
Dog May 2005 (Broad/canFam2) Broad Institute v. 2.0 2009-08-15 N/A2010-02-1450.766%
12mm9Mus
musculus
Mouse July 2007 (NCBI37/mm9) NCBI Build 37 2009-08-14 N/A2010-02-1431.310%
13monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-142010-02-147.906%