Ce10 conservation alignment: Difference between revisions

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(update external source sequence URLs)
(adding links to UCSC hgdownload test locations)
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<UL>
<UL>
<LI>June 2011 C. elegans 9-way [[Ce10 Genome size statistics]]</LI>
<LI>June 2011 C. elegans 9-way [[Ce10 Genome size statistics]]</LI>
<LI>June 2011 C. elegans 9-way [[Ce10_conservation_lastz_parameters]]<LI>
<LI>June 2011 C. elegans 9-way [[Ce10_conservation_lastz_parameters]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>
==UCSC download locations==
<UL>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/ce10/ elegans]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/cb4/ briggsae]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caePb3/ brenneri]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caeJap4/ japonica]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caeAng1/ angaria]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caeRem4/ remanei]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caeSp71/ C. sp. 7 JU1286]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caeSp91/ C. sp. 9 JU1422]</LI>
<LI>[http://hgdownload-test.cse.ucsc.edu/goldenPath/caeSp111/ C. sp. 11 JU1373]</LI>
</UL>
</UL>



Revision as of 23:04, 10 June 2011

see also

UCSC download locations

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-test
browser
Scientific name/
assembly information
Common
name
assembly date source
version
Repeat
Masker
Window
Masker
chain
on ce10
% of ce10
matched
(chainLink table)
01ce10Caenorhabditis
elegans
C. elegans Oct. 2010 (WS220/ce10) Washington University School of Medicine GSC and Sanger Institute WS220 2011-05-23 N/A N/AN/A
02cb4Caenorhabditis
briggsae
C. briggsae Apr. 2011 (WS225/cb4) Washington University School of Medicine GSC and Sanger Institute cb4 2011-05-24 2011-05-24 2011-06-0739.386%
03caeSp91Caenorhabditis
sp9.
JU1422
C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186805.1) 2011-05-27 2011-05-31 2011-06-0742.169%
04caeRem4Caenorhabditis
remanei
C. remanei Jul. 2007 (WS220/caeRem4) Washington University School of Medicine GSC C. remanei 15.0.1 2011-05-25 2011-05-25 2011-06-0741.722%
05caeSp111Caenorhabditis
sp.
11
JU1373
C. sp. 11 ju1373 Nov. 2010 (WUSTL 3.0.1/caeSp111) Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1) 2011-05-31 2011-05-31 2011-06-0737.876%
06caePb3Caenorhabditis
brenneri
C. brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2) 2011-06-08 2011-06-08 2011-06-0840.644%
07caeSp71Caenorhabditis
sp7.
JU1286
C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71) Washington University School of Medicine GSC Caenorhabditis sp. 7 JU1286 MAF-2007 4.0.1 (GCA_000186785.1) 2011-05-27 2011-05-27 2011-06-0740.236%
08caeJap4Caenorhabditis
japonica
C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4) Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1) 2011-06-03 2011-06-03 2011-06-0727.737%
09caeAng1Caenorhabditis
angaria
C. angaria Oct. 2010 (WS225/caeAng1) Division of Biology, California Institute of Technology(PS1010) ps10rel4 (GCA_000165025.1) 2011-05-31 2011-05-31 2011-06-0817.625%