Ce11 135-way conservation lastz parameters

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See Also


The default
scoring matrix is:
  The HoxD55
scoring matrix is:
 The human-chimp.v2
scoring matrix is:
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491

O=400 E=30

 
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091

O=400 E=30

 
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090

O=600 E=150

do not edit, automatically generated table

query abridged
repeats(no)
M(0)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of ce11
matched
(chainLink table)
% of query
matched
(chainLinkCe11)
C_sp38_MB_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0543.814% N/A
C. angaria caeAng2 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2539.417% 20.987%
C. japonica caeJap4 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2545.308% 19.533%
C_sp34_TK_2017 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0553.670% N/A
C_briggsae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0560.930% N/A
C. briggsae cb4 no5030003000default 9400lastz-1.03.663020004001 2015-07-0139.384% 36.204%
C_nigoni no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0562.531% N/A
C_sp26_LS_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0559.618% N/A
C. sp. 5 ju800 caeSp51 no5030003000default 9400lastz-1.03.663020004001 2015-07-0940.332% 31.721%
C_sp40_LS_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0552.955% N/A
C_latens no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0557.873% N/A
C. remanei caeRem4 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2561.020% 33.416%
C. brenneri caePb3 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2559.069% 32.296%
C. tropicalis caeSp111 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2555.203% 47.362%
C_sp31_LS_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0541.026% N/A
C_sp21_LS_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0523.081% N/A
C_sp32_LS_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0538.533% N/A
C_sp39_LS_2015 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0544.315% N/A
Pristionchus_arcanus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0513.074% N/A
Pristionchus_exspectatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.342% N/A
P. exspectatus priExs1 no5030003000default 9400lastz-1.03.663020004001 2015-07-236.222% 4.321%
Pristionchus_pacificus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.987% N/A
P. pacificus priPac3 no5030003000default 9400lastz-1.03.663020004001 2015-07-016.308% 4.534%
Pristionchus_maxplancki no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.880% N/A
Pristionchus_entomophagus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.602% N/A
Bursaphelenchus_xylophilus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0513.470% N/A
Pine wood nematode burXyl1 no5030003000default 9400lastz-1.03.663020004001 2015-07-096.291% 8.293%
Subanguina_moxae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.549% N/A
Oscheius_MCB no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-056.427% N/A
Oscheius_TEL_2014 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0515.278% N/A
Angiostrongylus_cantonensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.624% N/A
Necator_americanus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0515.754% N/A
N. americanus necAme1 no5030003000default 9400lastz-1.03.663020004001 2015-07-238.902% 4.115%
Nippostrongylus_brasiliensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0515.792% N/A
Ancylostoma_caninum no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0516.527% N/A
Ancylostoma_duodenale no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0515.004% N/A
A. ceylanicum ancCey1 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2515.964% 3.237%
Ascaris_suum no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0513.175% N/A
Pig roundworm ascSuu1 no5030003000default 9400lastz-1.03.663020004001 2015-07-235.722% 2.224%
Parascaris_univalens no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.720% N/A
Toxocara_canis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.502% N/A
Oesophagostomum_dentatum no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0514.994% N/A
Haemonchus_contortus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0514.406% N/A
Barber pole worm haeCon2 no5030003000default 9400lastz-1.03.663020004001 2015-07-078.936% 3.405%
Teladorsagia_circumcincta no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0514.484% N/A
Clonorchis_sinensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.450% N/A
Opisthorchis_viverrini no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.444% N/A
Dicrocoelium_dendriticum no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-050.832% N/A
Elaeophora_elaphi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-050.158% N/A
Macrostomum_lignano no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0513.379% N/A
Fasciola_gigantica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.502% N/A
Fasciola_hepatica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-054.266% N/A
Spirometra_erinaceieuropaei no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-052.894% N/A
Heligmosomoides_polygyrus_bakeri no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0514.696% N/A
Oscheius_tipulae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0516.438% N/A
Steinernema_carpocapsae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.640% N/A
Steinernema_scapterisci no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.987% N/A
Steinernema_feltiae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.885% N/A
Steinernema_glaseri no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.278% N/A
Echinococcus_canadensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.383% N/A
Echinococcus_granulosus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.234% N/A
Echinococcus_multilocularis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.403% N/A
Taenia_asiatica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.396% N/A
Taenia_saginata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.457% N/A
Taenia_multiceps no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.712% N/A
Taenia_solium no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-053.268% N/A
Trichuris_muris no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-055.651% N/A
Trichuris_trichiura no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-056.137% N/A
Whipworm triSui1 no5030003000default 9400lastz-1.03.663020004001 2015-07-232.917% 3.714%
Plectus_sambesii no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.406% N/A
Steinernema_monticolum no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.825% N/A
Microworm panRed1 no5030003000default 9400lastz-1.03.663020004001 2015-07-016.585% 10.359%
Diploscapter_coronatus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0524.970% N/A
Diploscapter_pachys no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0523.687% N/A
Brugia_malayi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0516.763% N/A
Filarial worm bruMal2 no5030003000default 9400lastz-1.03.663020004001 2015-08-115.065% 5.521%
Brugia_pahangi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0519.944% N/A
Wuchereria_bancrofti no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0520.673% N/A
Dirofilaria_immitis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0520.305% N/A
Dog heartworm dirImm1 no5030003000default 9400lastz-1.03.663020004001 2015-07-235.005% 5.474%
Onchocerca_ochengi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0519.777% N/A
Onchocerca_volvulus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0525.170% N/A
O. volvulus oncVol1 no5030003000default 9400lastz-1.03.663020004001 2015-08-105.193% 5.092%
Loa_loa no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0516.698% N/A
Eye worm loaLoa1 no5030003000default 9400lastz-1.03.663020004001 2015-07-235.056% 5.274%
Setaria_digitata no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0516.319% N/A
Setaria_equina no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0514.600% N/A
Onchocerca_flexuosa no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0515.520% N/A
Dugesia_japonica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0517.785% N/A
Girardia_tigrina no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0537.989% N/A
Schmidtea_mediterranea no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0539.093% N/A
Meloidogyne_arenaria no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0531.303% N/A
Meloidogyne_javanica no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0526.293% N/A
Meloidogyne_incognita no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0526.760% N/A
Meloidogyne_floridensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0512.683% N/A
M. incognita melInc2 no5030003000default 9400lastz-1.03.663020004001 2015-06-303.516% 5.539%
Meloidogyne_graminicola no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0517.004% N/A
M. hapla melHap1 no5030003000default 9400lastz-1.03.663020004001 2015-06-263.916% 6.840%
Parastrongyloides_trichosuri no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0528.310% N/A
Strongyloides_papillosus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0531.051% N/A
Strongyloides_venezuelensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0531.839% N/A
Strongyloides_stercoralis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0535.984% N/A
Threadworm strRat2 no25422004000HoxD55.q 3400lastz-1.04.003020004001 2018-10-2536.164% 11.848%
Schistosoma_haematobium no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-059.723% N/A
Schistosoma_mansoni no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.328% N/A
Schistosoma_japonicum no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-057.825% N/A
Dictyocaulus_viviparus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0517.480% N/A
Hymenolepis_microstoma no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-055.601% N/A
Rhabditophanes_KR3021 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0518.703% N/A
C. intestinalis ci3 no25430003000default 9400lastz-1.03.663020004001 2017-03-212.006% 1.699%
H. bacteriophora/m31e hetBac1 no5030003000default 9400lastz-1.03.663020004001 2015-07-2310.486% 13.556%
Gyrodactylus_salaris no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-056.686% N/A
Parapristionchus_giblindavisi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0515.865% N/A
Ditylenchus_destructor no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0514.413% N/A
Trichinella_T6 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.008% N/A
Trichinella_patagoniensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.836% N/A
Trichinella_T8 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.902% N/A
Trichinella_T9 no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.885% N/A
Trichinella_britovi no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.944% N/A
Trichinella_murrelli no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.930% N/A
Trichinella_nativa no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.699% N/A
Trichinella_nelsoni no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.754% N/A
Trichinella_spiralis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.697% N/A
Trichinella triSpi1 no5030003000default 9400lastz-1.03.663020004001 2015-07-232.848% 4.678%
Trichinella_papuae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.415% N/A
Trichinella_zimbabwensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.705% N/A
Trichinella_pseudospiralis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.462% N/A
Romanomermis_culicivorax no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-058.805% N/A
Globodera_ellingtonae no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0511.318% N/A
Globodera_rostochiensis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.968% N/A
Globodera_pallida no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0510.269% N/A
Heterodera_glycines no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-057.254% N/A
Rotylenchulus_reniformis no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0516.345% N/A
Acrobeloides_nanus no022004000HoxD55.q 3400lastz-1.04.003020004001 2018-12-0523.468% N/A