Ce11 26-way conservation alignment
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see also
- C. elegans 26-way Ce11 26-way Genome size statistics
- C. elegans 26-way Ce11 26-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on ce11 |
% of ce11 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| [url TBD 01] | ce11 | Caenorhabditis elegans | C. elegans | Aug. 2014 (WBcel245/ce11) | Washington University School of Medicine GSC and Sanger Institute WBcel245 | 2015-06-10 | 2015-06-10 | N/A | N/A |
| 02 | caeJap4 | Caenorhabditis japonica | C. japonica | Aug. 2010 (WUSTL 7.0.1/caeJap4) | Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1) | 2011-06-03 | 2011-06-03 | 2015-06-25 | 27.709% |
| 03 | caePb3 | Caenorhabditis brenneri | C. brenneri | Nov. 2010 (C. brenneri 6.0.1b/caePb3) | The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2) | 2011-06-08 | 2011-06-08 | 2015-07-01 | 40.638% |
| 04 | caeRem4 | Caenorhabditis remanei | C. remanei | Jul. 2007 (WS220/caeRem4) | Washington University School of Medicine GSC C. remanei 15.0.1 | 2011-05-25 | 2011-05-25 | 2015-07-02 | 41.715% |
| 05 | caeSp111 | Caenorhabditis tropicalis | C. tropicalis | Nov. 2010 (WUSTL 3.0.1/caeSp111) | Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1) | 2011-05-31 | 2011-05-31 | 2015-07-07 | 37.870% |
| 06 | cb4 | Caenorhabditis briggsae | C. briggsae | Apr. 2011 (WS225/cb4) | Washington University School of Medicine GSC and Sanger Institute cb4 | 2011-05-24 | 2011-05-24 | 2015-07-01 | 39.384% |
| [url TBD 07] | caeAng2 | [src TBD Caenorhabditis angaria] | C. angaria | Mar. 2012 (WS245/caeAng2) | Division of Biology, California Institute of Technology | 2015-06-30 | 2015-06-30 | 2015-06-30 | 17.682% |
| [url TBD 08] | caeSp51 | [src TBD Caenorhabditis sp5 ju800] | C. sp. 5 ju800 | Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51) | University of Edinburgh Caenorhabditis sp. 5 genome project | 2015-07-08 | 2015-07-08 | 2015-07-09 | 40.332% |
| [url TBD 09] | hetBac1 | [src TBD Heterorhabditis bacteriophora] | H. bacteriophora/m31e | Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1) | Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0 | 2015-07-14 | 2015-07-15 | 2015-07-23 | 10.486% |
| [url TBD 10] | panRed1 | [src TBD Panagrellus redivivus] | Microworm | Feb. 2013 (Pred3/panRed1) | California Institute of Technology P. redivivus genome project | 2015-07-01 | 2015-07-01 | 2015-07-01 | 6.585% |
| [url TBD 11] | strRat2 | [src TBD Strongyloides ratti] | Threadworm | Sep. 2014 (S. ratti ED321/strRat2) | Wellcome Trust Sanger Institute S. ratti genome project | 2015-07-08 | 2015-07-08 | 2015-07-09 | 5.669% |
| [url TBD 12] | ascSuu1 | [src TBD Ascaris suum] | Pig roundworm | Sep. 2012 (WS229/AscSuum_1.0/ascSuu1) | Beijing Genomics Institute | 2015-07-13 | 2015-07-14 | 2015-07-23 | 5.722% |
| [url TBD 13] | haeCon2 | [src TBD Haemonchus contortus] | Barber pole worm | Jul. 2013 (WormBase WS239/haeCon2) | Sanger Institute | 2015-07-02 | 2015-07-06 | 2015-07-07 | 8.936% |
| [url TBD 14] | ancCey1 | [src TBD Ancylostoma ceylanicum] | Hookworm | Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1) | Cornell University Ancylostoma ceylanicum genome project | 2015-07-15 | 2015-07-15 | 2015-07-23 | 9.736% |
| [url TBD 15] | necAme1 | [src TBD Necator americanus] | Hookworm | Dec. 2013 (WS242/N_americanus_v1/necAme1) | The Genome Institute at Washington University | 2015-07-15 | 2015-07-15 | 2015-07-23 | 8.902% |
| [url TBD 16] | priExs1 | [src TBD Pristionchus exspectatus] | P. exspectatus | Mar. 2014 (WS243/P_exspectatus_v1/priExs1) | Max Planck Institite for Developmental Genetics | 2015-07-14 | 2015-07-15 | 2015-07-23 | 6.222% |
| [url TBD 17] | priPac3 | [src TBD Pristionchus pacificus] | P. pacificus | Aug. 2014 (P_pacificus-v2/priPac3) | Max Planck Institute for Developmental Biology P. pacificus genome project | 2015-07-01 | 2015-07-01 | 2015-07-01 | 6.308% |
| [url TBD 18] | burXyl1 | [src TBD Bursaphelenchus xylophilus] | Pine wood nematode | Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1) | Wellcome Trust Sanger Institute B. xylophilus genome project | 2015-07-09 | 2015-07-09 | 2015-07-09 | 6.291% |
| [url TBD 19] | bruMal2 | [src TBD Brugia malayi] | Filarial worm | May. 2014 (WS244/B_malayi-3.1/bruMal2) | University of Pittsburgh B. malayi genome project | 2015-07-07 | 2015-07-08 | 2015-07-08 | 5.052% |
| 20 | melHap1 | [src TBD Meloidogyne hapla] | Root knot | Sep. 2008 (M. hapla VW9 WS210/melHap1) | The Center for the Biology of Nematode Parasitism, N.C. State | 2010-09-21 | 2010-09-21 | 2015-06-26 | 3.916% |
| [url TBD 21] | melInc2 | [src TBD Meloidogyne incognita] | Root knot | Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2) | Sanger and Genoscope | 2015-06-30 | 2015-06-30 | 2015-06-30 | 3.516% |
| [url TBD 22] | oncVol1 | [src TBD Onchocerca volvulus] | O. volvulus | Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1) | Wellcome Trust Sanger Institute O. volvulus genome project | 2015-07-09 | 2015-07-09 | 2015-07-09 | 5.182% |
| [url TBD 23] | triSpi1 | [src TBD Trichinella spiralis] | Trichinella | Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1) | WashU School of Medicine T. spiralis genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 2.848% |
| [url TBD 24] | triSui1 | [src TBD Trichuris suis] | Whipworm | Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1) | University of Melboure T. suis (male) genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 2.917% |
| [url TBD 25] | dirImm1 | [src TBD Dirofilaria immitis] | Dog heartworm | Sep. 2013 (WS240/D. immitis v2.2/dirImm1) | Edinburgh University D. immitis genome project | 2015-07-09 | 2015-07-09 | 2015-07-23 | 5.005% |
| [url TBD 26] | loaLoa1 | [src TBD Loa loa] | Eye worm | Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1) | Broad Institute L. loa genome project | 2015-07-10 | 2015-07-15 | 2015-07-23 | 5.056% |
