Ce9 conservation lastz parameters

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See Also:

The default
scoring matrix is:
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491

O=400 E=30

lastz parameters

Automatically generated table, do not edit

query abridged
repeats(no)
M(40M)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of ce9
matched
(chainLink table)
% of query
matched
(chainLinkCe9)
C. briggsae cb3 no5030003000default 9400lastz3020004001 2010-09-2042.300% 39.763%
C. remanei caeRem3 no5030003000default 9400lastz3020004001 2010-09-2041.722% 33.467%
C. brenneri caePb2 no5030003000default 9400lastz302000 4001 2010-09-2040.677% 32.313%
C. japonica caeJap3 no5030003000default 9400lastz3020004001 2010-09-2227.580% 19.464%
H. contortus haeCon1 no5030003000default 9400lastz3020004001 2010-09-237.463% 3.178%
P. pacificus priPac2 no5030003000default 9400lastz3020004001 2010-09-295.862% 4.692%
M. hapla melHap1 no5030003000default 9400lastz3020004001 2010-09-223.922% 6.849%
M. incognita melInc1 no5030003000default 9400lastz3020004001 2010-09-223.301% 5.166%
B. malayi bruMal1 no5030003000default 9400lastz3020004001 2010-09-224.790% 5.457%